mRNA_M-pyrifera_M_contig92547.21404.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92547.21404.1
Unique NamemRNA_M-pyrifera_M_contig92547.21404.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A813BZC3_9DINO (Vwde protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BZC3_9DINO)

HSP 1 Score: 120 bits (302), Expect = 9.530e-31
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQG-SARCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRNSVV 315
            DP TG P+   D     L    S + + +T  VT QY  G S  CRSWGDPH V WS  K++F+G GD+YLARSCDGEF VQTR  +CFTVSCN AV+VK+RNS+V
Sbjct:   13 DPATGLPI--ADQSAYQLSRGDSQEAVVDTLPVTIQYSGGGSGTCRSWGDPHFVTWSSKKWNFYGTGDFYLARSCDGEFAVQTRQEQCFTVSCNTAVIVKYRNSIV 116
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BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A5A8C8H2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C8H2_CAFRO)

HSP 1 Score: 123 bits (308), Expect = 2.050e-30
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    1 DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQG-SARCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRNSVV 315
            DP TG P+   D     L    + Q + ET  VT QY  G S  CRSWGDPH V WS  K++F+G GD+YLARSCDGEFVVQTR  +CFTVSCN AVVVK+RNS+V
Sbjct:  951 DPATGLPI--ADQSAYRLGEGDTDQAVVETLPVTVQYSGGGSGTCRSWGDPHFVTWSSNKWNFYGTGDFYLARSCDGEFVVQTRQEQCFTVSCNTAVVVKYRNSIV 1054
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BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A5A8EQ31_CAFRO (VWFD domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EQ31_CAFRO)

HSP 1 Score: 123 bits (308), Expect = 2.070e-30
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    1 DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQG-SARCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRNSVV 315
            DP TG P+   D     L    + Q + ET  VT QY  G S  CRSWGDPH V WS  K++F+G GD+YLARSCDGEFVVQTR  +CFTVSCN AVVVK+RNS+V
Sbjct:  381 DPATGLPI--ADQSAYRLGEGDTDQAVVETLPVTVQYSGGGSGTCRSWGDPHFVTWSSNKWNFYGTGDFYLARSCDGEFVVQTRQEQCFTVSCNTAVVVKYRNSIV 484
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BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A5A8DD20_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DD20_CAFRO)

HSP 1 Score: 123 bits (308), Expect = 2.070e-30
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    1 DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQG-SARCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRNSVV 315
            DP TG P+   D     L    + Q + ET  VT QY  G S  CRSWGDPH V WS  K++F+G GD+YLARSCDGEFVVQTR  +CFTVSCN AVVVK+RNS+V
Sbjct: 2538 DPATGLPI--ADQSAYRLGEGDTDQAVVETLPVTVQYSGGGSGTCRSWGDPHFVTWSSNKWNFYGTGDFYLARSCDGEFVVQTRQEQCFTVSCNTAVVVKYRNSIV 2641
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BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A5A8E061_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E061_CAFRO)

HSP 1 Score: 123 bits (308), Expect = 2.080e-30
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    1 DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQG-SARCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRNSVV 315
            DP TG P+   D     L    + Q + ET  VT QY  G S  CRSWGDPH V WS  K++F+G GD+YLARSCDGEFVVQTR  +CFTVSCN AVVVK+RNS+V
Sbjct: 2396 DPATGLPI--ADQSAYRLGEGDTDQAVVETLPVTVQYSGGGSGTCRSWGDPHFVTWSSNKWNFYGTGDFYLARSCDGEFVVQTRQEQCFTVSCNTAVVVKYRNSIV 2499
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BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A5A8DXW9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DXW9_CAFRO)

HSP 1 Score: 123 bits (308), Expect = 2.080e-30
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    1 DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQG-SARCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRNSVV 315
            DP TG P+   D     L    + Q + ET  VT QY  G S  CRSWGDPH V WS  K++F+G GD+YLARSCDGEFVVQTR  +CFTVSCN AVVVK+RNS+V
Sbjct: 2542 DPATGLPI--ADQSAYRLGEGDTDQAVVETLPVTVQYSGGGSGTCRSWGDPHFVTWSSNKWNFYGTGDFYLARSCDGEFVVQTRQEQCFTVSCNTAVVVKYRNSIV 2645
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BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A7S0PAB6_CAFRO (Hypothetical protein (Fragment) n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PAB6_CAFRO)

HSP 1 Score: 121 bits (303), Expect = 9.440e-30
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQG-SARCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRNSVV 315
            DP TG P+   D     L    S + + +T  VT QY  G S  CRSWGDPH V WS  K++F+G GD+YLARSCDGEF VQTR  +CFTVSCN AV+VK+RNS+V
Sbjct:  612 DPATGLPI--ADQSAYQLSRGDSQEAVVDTLPVTVQYSGGGSGTCRSWGDPHFVTWSSKKWNFYGTGDFYLARSCDGEFAVQTRQEQCFTVSCNTAVIVKYRNSIV 715
[Close]
BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A5A8DZD3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DZD3_CAFRO)

HSP 1 Score: 121 bits (303), Expect = 9.780e-30
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQG-SARCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRNSVV 315
            DP TG P+   D     L    S + + +T  VT QY  G S  CRSWGDPH V WS  K++F+G GD+YLARSCDGEF VQTR  +CFTVSCN AV+VK+RNS+V
Sbjct:  966 DPATGLPI--ADQSAYQLSRGDSQEAVVDTLPVTVQYSGGGSGTCRSWGDPHFVTWSSKKWNFYGTGDFYLARSCDGEFAVQTRQEQCFTVSCNTAVIVKYRNSIV 1069
[Close]
BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A5A8CVR8_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CVR8_CAFRO)

HSP 1 Score: 121 bits (303), Expect = 9.800e-30
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQG-SARCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRNSVV 315
            DP TG P+   D     L    S + + +T  VT QY  G S  CRSWGDPH V WS  K++F+G GD+YLARSCDGEF VQTR  +CFTVSCN AV+VK+RNS+V
Sbjct:  966 DPATGLPI--ADQSAYQLSRGDSQEAVVDTLPVTVQYSGGGSGTCRSWGDPHFVTWSSKKWNFYGTGDFYLARSCDGEFAVQTRQEQCFTVSCNTAVIVKYRNSIV 1069
[Close]
BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Match: A0A6A5BKG2_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BKG2_NAEFO)

HSP 1 Score: 67.4 bits (163), Expect = 7.620e-11
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  127 RCRSWGDPHLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKFRN 306
            +C+S GDPH   + G  YDF+GVGDY LA S DG+FVV +R  R  +VS N A  VK  N
Sbjct:  376 KCQSIGDPHYTDFKGQYYDFYGVGDYILASSMDGDFVVHSRTGRWGSVSVNTAFAVKVNN 435
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92547.21404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A813BZC3_9DINO9.530e-3156.60Vwde protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A5A8C8H2_CAFRO2.050e-3059.43Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8EQ31_CAFRO2.070e-3059.43VWFD domain-containing protein n=1 Tax=Cafeteria r... [more]
A0A5A8DD20_CAFRO2.070e-3059.43Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8E061_CAFRO2.080e-3059.43Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DXW9_CAFRO2.080e-3059.43Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S0PAB6_CAFRO9.440e-3056.60Hypothetical protein (Fragment) n=2 Tax=Cafeteria ... [more]
A0A5A8DZD3_CAFRO9.780e-3056.60Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CVR8_CAFRO9.800e-3056.60Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A6A5BKG2_NAEFO7.620e-1153.33Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92547contigM-pyrifera_M_contig92547:442..759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.4
Seed ortholog evalue4.6e-09
Seed eggNOG ortholog10224.XP_006812409.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.von Willebrand factor D and EGF
EggNOG OGs38DB6@33154,3BAE0@33208,3CV9E@33213,KOG1217@1,KOG1217@2759
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.2811277-CDS-M-pyrifera_M_contig92547:441..7591622816838.2811277-CDS-M-pyrifera_M_contig92547:441..759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92547 442..759 +
1692278208.2745664-CDS-M-pyrifera_M_contig92547:441..7591692278208.2745664-CDS-M-pyrifera_M_contig92547:441..759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92547 442..759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92547.21404.1prot_M-pyrifera_M_contig92547.21404.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92547 442..759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92547.21404.1

>prot_M-pyrifera_M_contig92547.21404.1 ID=prot_M-pyrifera_M_contig92547.21404.1|Name=mRNA_M-pyrifera_M_contig92547.21404.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
DPDTGEPVDPEDYETSGLVVPISWQVISETSTVTTQYRQGSARCRSWGDP
HLVRWSGAKYDFFGVGDYYLARSCDGEFVVQTRHTRCFTVSCNRAVVVKF
RNSVVR
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mRNA from alignment at M-pyrifera_M_contig92547:442..759+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92547.21404.1 ID=mRNA_M-pyrifera_M_contig92547.21404.1|Name=mRNA_M-pyrifera_M_contig92547.21404.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig92547:442..759+ (Macrocystis pyrifera P11B4 male)
GACCCCGACACAGGAGAGCCTGTTGATCCTGAAGATTACGAAACGAGTGG
CCTCGTTGTGCCAATTTCTTGGCAAGTAATTTCTGAAACATCCACTGTCA
CGACACAATATCGACAAGGTTCAGCCCGTTGTCGATCTTGGGGTGATCCA
CATTTAGTGCGATGGTCTGGAGCAAAGTACGACTTCTTCGGAGTTGGTGA
CTACTATTTGGCAAGATCATGTGACGGTGAGTTTGTGGTGCAAACTCGTC
ACACTCGCTGCTTCACAGTGTCTTGCAATCGAGCAGTTGTTGTCAAGTTT
CGAAACTCTGTCGTTAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92547:442..759+

>mRNA_M-pyrifera_M_contig92547.21404.1 ID=mRNA_M-pyrifera_M_contig92547.21404.1|Name=mRNA_M-pyrifera_M_contig92547.21404.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig92547:442..759+ (Macrocystis pyrifera P11B4 male)
GACCCCGACACAGGAGAGCCTGTTGATCCTGAAGATTACGAAACGAGTGG
CCTCGTTGTGCCAATTTCTTGGCAAGTAATTTCTGAAACATCCACTGTCA
CGACACAATATCGACAAGGTTCAGCCCGTTGTCGATCTTGGGGTGATCCA
CATTTAGTGCGATGGTCTGGAGCAAAGTACGACTTCTTCGGAGTTGGTGA
CTACTATTTGGCAAGATCATGTGACGGTGAGTTTGTGGTGCAAACTCGTC
ACACTCGCTGCTTCACAGTGTCTTGCAATCGAGCAGTTGTTGTCAAGTTT
CGAAACTCTGTCGTTAGAGACCCCGACACAGGAGAGCCTGTTGATCCTGA
AGATTACGAAACGAGTGGCCTCGTTGTGCCAATTTCTTGGCAAGTAATTT
CTGAAACATCCACTGTCACGACACAATATCGACAAGGTTCAGCCCGTTGT
CGATCTTGGGGTGATCCACATTTAGTGCGATGGTCTGGAGCAAAGTACGA
CTTCTTCGGAGTTGGTGACTACTATTTGGCAAGATCATGTGACGGTGAGT
TTGTGGTGCAAACTCGTCACACTCGCTGCTTCACAGTGTCTTGCAATCGA
GCAGTTGTTGTCAAGTTTCGAAACTCTGTCGTTAGA
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