mRNA_M-pyrifera_M_contig92495.21398.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92495.21398.1
Unique NamemRNA_M-pyrifera_M_contig92495.21398.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: A0A3D5DCR9_9GAMM (RNA polymerase-associated protein RapA n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCR9_9GAMM)

HSP 1 Score: 343 bits (879), Expect = 3.380e-108
Identity = 172/254 (67.72%), Postives = 207/254 (81.50%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGDEDAEVSGDEEPDNPFDSAQLVLAGLS 762
            ESELGLGIVIE  +R VTLSFPA+GERRVYA +NAPLSRV Y+IGE I  ADG  +++ +R + +GC+IYGG++ DG   ++ E  LDSFVQFSRPLDRLFAGQIDKNN+F+LR E+L  QH H +S AYGL+GPRVQLLPHQFYIA++VA R+ PRVLLADEVGLGKTIEAGLI+HQ ++ G   RVLI+VPD+LVHQWL EMLRRFNLHFTILDEE C AIE G D  ++   ++   NPF+S+QL+L GLS
Sbjct:   17 ESELGLGIVIECIDRLVTLSFPASGERRVYAIENAPLSRVTYEIGETIRIADGGLLRVTERQEANGCLIYGGISEDGSLEVLPEFELDSFVQFSRPLDRLFAGQIDKNNAFLLRAESLRLQHLHRQSQAYGLVGPRVQLLPHQFYIAKEVAGRHQPRVLLADEVGLGKTIEAGLILHQLVMRGEVDRVLIVVPDNLVHQWLAEMLRRFNLHFTILDEEICAAIE-GSDNKSDEYPEDCSVNPFESSQLILVGLS 269          
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: A0A352Q3T2_9GAMM (RNA polymerase-associated protein RapA (Fragment) n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A352Q3T2_9GAMM)

HSP 1 Score: 316 bits (810), Expect = 2.510e-104
Identity = 160/268 (59.70%), Postives = 199/268 (74.25%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGDEDAE---------------VSGDEEPDNPFDSAQLVLAGL 759
            E++LGLGIV +  +RRV ++FPAAGE+RVYA DNAPL RVIY +GE +   DG    I + H  +GC++Y GV   G+P  + E++LDSFV FS+P DRLFAGQ+D +  F+LR ETL H+H  A S   GLLGPRVQLLPHQ YIA QVA R+ PRVLLADEVGLGKTIEAGL++HQQL CG+A RVLI++P+SLVHQWLVEMLRRFNL FT+LDE+ C+AIE+  + DA+               V+G E PDNPF++AQLV+  L
Sbjct:   17 ETDLGLGIVAQLAHRRVEVTFPAAGEQRVYAADNAPLGRVIYPVGERVHSDDGDAFTITETHQENGCVVYTGVDEAGQPVTLHEVDLDSFVHFSKPQDRLFAGQVDSSKRFLLRCETLRHRHLLAASPVQGLLGPRVQLLPHQLYIASQVAQRHAPRVLLADEVGLGKTIEAGLVLHQQLTCGQASRVLIVLPESLVHQWLVEMLRRFNLRFTVLDEQRCLAIESP-ESDADLLSADEAPATEDQHPVTGGEVPDNPFETAQLVICSL 283          
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: A0A1R1LZD5_9GAMM (RNA polymerase-associated protein RapA n=2 Tax=Motiliproteus sp. MSK22-1 TaxID=1897630 RepID=A0A1R1LZD5_9GAMM)

HSP 1 Score: 318 bits (814), Expect = 9.940e-99
Identity = 162/254 (63.78%), Postives = 197/254 (77.56%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGDEDAEVSGDEEPDNPFDSAQLVLAGLS 762
            ESELGLGIV +  NRRVT+SFPA GE RVYA +NAPLSR+ Y +GE +  ADGL+I++  R + +G  IY GV ++G+   I E++LDSFV F++P DRLFAGQIDKN+ F LR +TL + HR  +S AYGLLGPRVQLLPHQFYIA QV+ R+ PRVLLADEVGLGKTIEAGLI+HQ L+ GRA+RVL++VPDSL+HQWLVEMLRRFNLHF+ILDE+ C A+   G+            NPF+SAQLVL  LS
Sbjct:   16 ESELGLGIVADIANRRVTISFPAVGEERVYAANNAPLSRIEYAVGEEVLSADGLSIEVNGREEINGYYIYSGVCSEGKQHRIEEIDLDSFVHFNKPQDRLFAGQIDKNSRFQLRVDTLNYIHRLQQSEAYGLLGPRVQLLPHQFYIAHQVSRRHAPRVLLADEVGLGKTIEAGLILHQHLVSGRAERVLVVVPDSLIHQWLVEMLRRFNLHFSILDEDRCQALLEAGE-----------GNPFESAQLVLCTLS 258          
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: A0A7D7VJ44_9GAMM (RNA polymerase-associated protein RapA n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7D7VJ44_9GAMM)

HSP 1 Score: 318 bits (814), Expect = 1.180e-98
Identity = 162/254 (63.78%), Postives = 192/254 (75.59%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGDEDAEVSGDEEPDNPFDSAQLVLAGLS 762
            ESELGLGIV++  NRRVT+SFPA GERR YA  NAPLSRV Y +GE +++ADG++  I +  +  G +IY G+  +G    + E++L+SFVQFSRP DRLFAGQ+DK  +F LR ETL HQHR  +S +YGLLGPRVQLLPHQ YIA QVA RY PRVLLADEVGLGKTIEAGLI+HQQL+ G A RVL++VPDSLVHQWLVEM RRFNL FTILDEE C A++             EP NPF++AQ VL  LS
Sbjct:   16 ESELGLGIVVDTANRRVTVSFPAVGERRTYAISNAPLSRVHYTVGEKVSNADGVSFAIAEVIEQGGYLIYQGLDEEGNQHSLEEIDLESFVQFSRPQDRLFAGQVDKVKNFSLRVETLHHQHRLQKSPSYGLLGPRVQLLPHQLYIASQVAKRYAPRVLLADEVGLGKTIEAGLILHQQLITGAASRVLVVVPDSLVHQWLVEMSRRFNLQFTILDEERCHALDEA-----------EPGNPFETAQCVLCSLS 258          
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: S6H8L8_9GAMM (RNA polymerase-associated protein RapA n=2 Tax=Bacteria TaxID=2 RepID=S6H8L8_9GAMM)

HSP 1 Score: 318 bits (814), Expect = 1.260e-98
Identity = 166/260 (63.85%), Postives = 194/260 (74.62%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGD-------EDAEVSGDEEPDNPFDSAQLVLAGL 759
            ESELGLGI++ +ENRR+ +SFPA  ERR YATDNAPLSRVIY++GE I+D  G +  I+ R +  GC IY       +   IAE+ LDSFV FS+P DRLFAGQIDK  SF LR ETLAHQH H +S   GLLGPRVQLLPHQFYIA QVA R+ PRVLLADEVGLGKT+EAGLI+HQQL+  RA+R+LI+VPDSLVHQWLVEMLRRFNL F+ILDE  C+AIE           ED +V  D    NPF+S+QL+L  L
Sbjct:   17 ESELGLGIIVSSENRRIEVSFPAVAERRTYATDNAPLSRVIYNVGEEISDQQGDSYIIQHRLEEQGCFIYQCGNDTSQTVAIAEIELDSFVHFSKPQDRLFAGQIDKLKSFRLRVETLAHQHNHQQSGVCGLLGPRVQLLPHQFYIASQVANRHAPRVLLADEVGLGKTVEAGLILHQQLITDRAQRILIVVPDSLVHQWLVEMLRRFNLMFSILDENRCLAIEHKTPDIDLDLLEDDQVPEDMLEVNPFESSQLILCSL 276          
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: UPI00124D1739 (RNA polymerase-associated protein RapA n=1 Tax=Nitrincola alkalilacustris TaxID=1571224 RepID=UPI00124D1739)

HSP 1 Score: 313 bits (802), Expect = 5.140e-97
Identity = 157/254 (61.81%), Postives = 192/254 (75.59%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGDEDAEVSGDEEPDNPFDSAQLVLAGLS 762
            E+ELGLG+V+E  NRRV L FPA  ERR YA+DNAPLSRV Y++GE ++D  G+ ++I +R ++ GC IY G+ A+G+  I+ EL L+S V FSRP +RLFAGQID+N  F LR ETL HQHR  +S AYGL GPRVQLLPHQF+IA ++A+R  PR LLADEVGLGKTIEAGL++HQ+L  G A RVLI+VPDSLVHQWLVEMLRRFNL FT+LDEE C A+E  G            DNPF+ +QLV+  LS
Sbjct:   17 EAELGLGLVLECANRRVELIFPAVEERRTYASDNAPLSRVCYEVGETVSDNQGVELEIRERVEHKGCFIYIGLDAEGDERILPELELNSAVHFSRPQERLFAGQIDRNGLFKLRVETLEHQHRLRQSPAYGLTGPRVQLLPHQFHIAAELASRPAPRALLADEVGLGKTIEAGLVIHQRLFSGHASRVLIVVPDSLVHQWLVEMLRRFNLSFTLLDEERCEALEESG-----------TDNPFEGSQLVICALS 259          
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: A0A437QCU5_9GAMM (RNA polymerase-associated protein RapA n=2 Tax=Neptunomonas TaxID=75687 RepID=A0A437QCU5_9GAMM)

HSP 1 Score: 313 bits (802), Expect = 5.320e-97
Identity = 157/252 (62.30%), Postives = 189/252 (75.00%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGDEDAEVSGDEEPDNPFDSAQLVLAG 756
            E+ELGLGIV+EN NRRVT+ FPAA E R YA DNAP+SRV Y IGE     DG++ +I+ RH+ +GC+IY GV  D    I+ E+ LDS VQFSRP DRLFAGQIDK++ + LR +TL H HR  +S  YGL G RVQLLPHQ+YIA +VA R+ PRVLLADEVGLGKTIEAGLI+H QL+ GRAKRVLI VPDSL++QWL+EM+RRFNL F+I+DE  C A+E  G            DNPF+SAQL+L G
Sbjct:   17 EAELGLGIVVENLNRRVTMQFPAADEERTYAIDNAPVSRVEYPIGEQARTKDGVSFEIKDRHEQNGCLIYFGVDQDDNEVIVPEVELDSAVQFSRPQDRLFAGQIDKSSRYRLRLDTLQHHHRQQQSPTYGLAGGRVQLLPHQYYIAHEVANRFAPRVLLADEVGLGKTIEAGLILHHQLITGRAKRVLIAVPDSLIYQWLIEMMRRFNLQFSIMDELRCTAMELSG-----------TDNPFESAQLILCG 257          
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: A0A1I2P533_9GAMM (RNA polymerase-associated protein RapA n=4 Tax=Neptunomonas TaxID=75687 RepID=A0A1I2P533_9GAMM)

HSP 1 Score: 313 bits (802), Expect = 6.610e-97
Identity = 158/254 (62.20%), Postives = 193/254 (75.98%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGDEDAEVSGDEEPDNPFDSAQLVLAGLS 762
            E+ELGLG+V  N +RRVT+ +PAA + R YATDNAP+SRV Y + + I++A G+ IKI +R + +GC IY G+  DGE  II E++LDS VQF+RP DRLFAGQ+DK + + LR ETL HQH   +S  YGL G RVQLLPHQFYIA +VA RY PRVLLADEVGLGKTIEAGLI+HQQL+ GRAKRVLI VPDSL++QWL+EM+RRFNLHF+I+DE  C A+E  G E           NPFD+AQL+L G S
Sbjct:   29 EAELGLGLVTSNADRRVTILYPAAEDERTYATDNAPVSRVEYPVDDTISNAAGIKIKIAERIEKNGCFIYIGLDDDGEEHIIPEIDLDSHVQFNRPQDRLFAGQVDKLSRYKLRLETLEHQHTQQKSDTYGLSGGRVQLLPHQFYIAHEVANRYAPRVLLADEVGLGKTIEAGLILHQQLISGRAKRVLITVPDSLIYQWLIEMMRRFNLHFSIMDELRCTALEMSGSE-----------NPFDTAQLLLCGQS 271          
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: A0A7C1NPN2_9GAMM (RNA polymerase-associated protein RapA n=1 Tax=Porticoccus sp. TaxID=2024853 RepID=A0A7C1NPN2_9GAMM)

HSP 1 Score: 313 bits (802), Expect = 1.160e-96
Identity = 163/270 (60.37%), Postives = 200/270 (74.07%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGDEDAEVSGDEEP----------------DNPFDSAQLVLAGLS 762
            E ELGLGIV+E  NRRVTLSFPAA E+R YA  +APLSRV Y +GE IT ADG  +K+ +  + +GCI+Y G   +G+   + EL+LDSFV+FS+P DR+FAGQI+K++SF LR  TL H+H H +S A+GLLG RVQLLPHQ YIA QV  R+ PRVLLADEVGLGKTIEAGL++HQQL+ GRA R LI+VPDSLVHQWLVEMLRRFNL FTILDE  C+A+E   D D ++ G ++P                DNPF+++QLVL  LS
Sbjct:   17 EPELGLGIVVEYANRRVTLSFPAASEQRTYAAGSAPLSRVEYPVGECITSADGEQLKVTELQERAGCILYIGENDNGDAVELEELDLDSFVRFSKPQDRMFAGQIEKSSSFELRVATLEHRHSHQQSDAFGLLGGRVQLLPHQLYIANQVGQRHAPRVLLADEVGLGKTIEAGLVLHQQLISGRASRALIVVPDSLVHQWLVEMLRRFNLRFTILDEARCLALEEV-DTDDDLFGLDDPTDDLRDELVEDQSLEIDNPFETSQLVLCSLS 285          
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Match: A0A496X5G3_9GAMM (RNA polymerase-associated protein RapA n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496X5G3_9GAMM)

HSP 1 Score: 312 bits (800), Expect = 2.330e-96
Identity = 168/282 (59.57%), Postives = 197/282 (69.86%), Query Frame = 1
Query:    1 ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITDADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRLFAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQVAARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQWLVEMLRRFNLHFTILDEETCVAIETGGDEDAE----------------------------VSGDEEPDNPFDSAQLVLAGLS 762
            ES+LGLGIV++  +RRV L+FPAA E+RVYA DNAPL RVIY IG+ +++A+G  I I   H   GC++Y GV    E  ++ E++LDSFV FS+P DRLFAGQ+DK N F LR ETL HQHR  +SS YGLLGPRVQLLPHQ YIA QVA R+ PRVLLADEVGLGKTIEAGLI+HQQL+ G A RVL++VPDSLVHQWLVEMLRRFNL FTILDE  C A+E   ++  E                            VSGD    NPF+SAQLVL  LS
Sbjct:   17 ESDLGLGIVVDVASRRVELTFPAAAEQRVYAADNAPLGRVIYPIGDRVSNAEGQHITITDCHTQDGCVVYVGVDDRAEQVVLHEIDLDSFVHFSQPKDRLFAGQVDKPNRFRLRCETLRHQHRTRQSSVYGLLGPRVQLLPHQLYIASQVANRHAPRVLLADEVGLGKTIEAGLILHQQLVSGHASRVLVVVPDSLVHQWLVEMLRRFNLRFTILDEARCEAMEADEEDAFEEEFADIDEHEXXXXXXXXXXDDQLLPPVVSGD----NPFESAQLVLCSLS 294          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92495.21398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DCR9_9GAMM3.380e-10867.72RNA polymerase-associated protein RapA n=1 Tax=Gam... [more]
A0A352Q3T2_9GAMM2.510e-10459.70RNA polymerase-associated protein RapA (Fragment) ... [more]
A0A1R1LZD5_9GAMM9.940e-9963.78RNA polymerase-associated protein RapA n=2 Tax=Mot... [more]
A0A7D7VJ44_9GAMM1.180e-9863.78RNA polymerase-associated protein RapA n=1 Tax=Gam... [more]
S6H8L8_9GAMM1.260e-9863.85RNA polymerase-associated protein RapA n=2 Tax=Bac... [more]
UPI00124D17395.140e-9761.81RNA polymerase-associated protein RapA n=1 Tax=Nit... [more]
A0A437QCU5_9GAMM5.320e-9762.30RNA polymerase-associated protein RapA n=2 Tax=Nep... [more]
A0A1I2P533_9GAMM6.610e-9762.20RNA polymerase-associated protein RapA n=4 Tax=Nep... [more]
A0A7C1NPN2_9GAMM1.160e-9660.37RNA polymerase-associated protein RapA n=1 Tax=Por... [more]
A0A496X5G3_9GAMM2.330e-9659.57RNA polymerase-associated protein RapA n=2 Tax=Gam... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92495contigM-pyrifera_M_contig92495:3..764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score310.8
Seed ortholog evalue5.7e-82
Seed eggNOG ortholog1122599.AUGR01000014_gene511
Preferred namerapA
KEGG koko:K03580
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001000,GO:0003674,GO:0003676,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043175,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
EggNOG OGs1MX6H@1224,1RNRZ@1236,1XHNQ@135619,COG0553@1,COG0553@2
COG Functional cat.K
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons1
Model size762
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.0064619-CDS-M-pyrifera_M_contig92495:2..7641622816838.0064619-CDS-M-pyrifera_M_contig92495:2..764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92495 3..764 -
1692278208.1160874-CDS-M-pyrifera_M_contig92495:2..7641692278208.1160874-CDS-M-pyrifera_M_contig92495:2..764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92495 3..764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92495.21398.1prot_M-pyrifera_M_contig92495.21398.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92495 3..764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92495.21398.1

>prot_M-pyrifera_M_contig92495.21398.1 ID=prot_M-pyrifera_M_contig92495.21398.1|Name=mRNA_M-pyrifera_M_contig92495.21398.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
ESELGLGIVIENENRRVTLSFPAAGERRVYATDNAPLSRVIYDIGEVITD
ADGLTIKIEQRHDNSGCIIYGGVTADGEPAIIAELNLDSFVQFSRPLDRL
FAGQIDKNNSFILRTETLAHQHRHARSSAYGLLGPRVQLLPHQFYIAQQV
AARYHPRVLLADEVGLGKTIEAGLIVHQQLLCGRAKRVLIIVPDSLVHQW
LVEMLRRFNLHFTILDEETCVAIETGGDEDAEVSGDEEPDNPFDSAQLVL
AGLS
back to top

mRNA from alignment at M-pyrifera_M_contig92495:3..764-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92495.21398.1 ID=mRNA_M-pyrifera_M_contig92495.21398.1|Name=mRNA_M-pyrifera_M_contig92495.21398.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig92495:3..764- (Macrocystis pyrifera P11B4 male)
GAATCGGAACTGGGTCTCGGGATCGTCATCGAGAACGAGAACCGGCGTGT CACGCTCAGTTTTCCCGCCGCCGGTGAACGCCGCGTCTATGCCACCGACA ACGCCCCCTTGAGCCGCGTCATCTACGACATCGGCGAGGTCATCACGGAT GCCGACGGTCTCACGATCAAGATCGAGCAACGCCACGACAACAGCGGTTG CATCATCTACGGTGGCGTCACTGCCGACGGTGAGCCCGCGATCATCGCCG AGTTGAATCTCGACAGTTTCGTCCAGTTCAGCCGTCCGCTCGATCGCCTG TTCGCCGGCCAGATCGACAAAAACAACAGTTTTATTCTGCGCACGGAAAC GCTTGCGCATCAGCACCGGCATGCGCGTTCGTCCGCTTACGGCCTGCTTG GTCCGCGCGTGCAACTGCTGCCGCATCAGTTCTACATCGCGCAGCAAGTC GCCGCGCGCTATCACCCGCGCGTGCTGCTCGCCGACGAAGTGGGCCTCGG CAAGACCATCGAAGCCGGCCTCATCGTCCACCAGCAGTTGTTGTGCGGGC GCGCGAAACGCGTGTTGATCATCGTGCCCGACAGCCTCGTGCATCAATGG CTCGTGGAAATGCTGCGGCGTTTCAATCTGCATTTCACAATCCTCGACGA GGAGACGTGCGTGGCGATCGAGACCGGCGGCGACGAGGATGCGGAGGTGT CAGGCGACGAGGAGCCCGACAATCCGTTCGACAGCGCGCAACTCGTACTG GCCGGATTATCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig92495:3..764-

>mRNA_M-pyrifera_M_contig92495.21398.1 ID=mRNA_M-pyrifera_M_contig92495.21398.1|Name=mRNA_M-pyrifera_M_contig92495.21398.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig92495:3..764- (Macrocystis pyrifera P11B4 male)
GAATCGGAACTGGGTCTCGGGATCGTCATCGAGAACGAGAACCGGCGTGT
CACGCTCAGTTTTCCCGCCGCCGGTGAACGCCGCGTCTATGCCACCGACA
ACGCCCCCTTGAGCCGCGTCATCTACGACATCGGCGAGGTCATCACGGAT
GCCGACGGTCTCACGATCAAGATCGAGCAACGCCACGACAACAGCGGTTG
CATCATCTACGGTGGCGTCACTGCCGACGGTGAGCCCGCGATCATCGCCG
AGTTGAATCTCGACAGTTTCGTCCAGTTCAGCCGTCCGCTCGATCGCCTG
TTCGCCGGCCAGATCGACAAAAACAACAGTTTTATTCTGCGCACGGAAAC
GCTTGCGCATCAGCACCGGCATGCGCGTTCGTCCGCTTACGGCCTGCTTG
GTCCGCGCGTGCAACTGCTGCCGCATCAGTTCTACATCGCGCAGCAAGTC
GCCGCGCGCTATCACCCGCGCGTGCTGCTCGCCGACGAAGTGGGCCTCGG
CAAGACCATCGAAGCCGGCCTCATCGTCCACCAGCAGTTGTTGTGCGGGC
GCGCGAAACGCGTGTTGATCATCGTGCCCGACAGCCTCGTGCATCAATGG
CTCGTGGAAATGCTGCGGCGTTTCAATCTGCATTTCACAATCCTCGACGA
GGAGACGTGCGTGGCGATCGAGACCGGCGGCGACGAGGATGCGGAGGTGT
CAGGCGACGAGGAGCCCGACAATCCGTTCGACAGCGCGCAACTCGTACTG
GCCGGATTATCCGAATCGGAACTGGGTCTCGGGATCGTCATCGAGAACGA
GAACCGGCGTGTCACGCTCAGTTTTCCCGCCGCCGGTGAACGCCGCGTCT
ATGCCACCGACAACGCCCCCTTGAGCCGCGTCATCTACGACATCGGCGAG
GTCATCACGGATGCCGACGGTCTCACGATCAAGATCGAGCAACGCCACGA
CAACAGCGGTTGCATCATCTACGGTGGCGTCACTGCCGACGGTGAGCCCG
CGATCATCGCCGAGTTGAATCTCGACAGTTTCGTCCAGTTCAGCCGTCCG
CTCGATCGCCTGTTCGCCGGCCAGATCGACAAAAACAACAGTTTTATTCT
GCGCACGGAAACGCTTGCGCATCAGCACCGGCATGCGCGTTCGTCCGCTT
ACGGCCTGCTTGGTCCGCGCGTGCAACTGCTGCCGCATCAGTTCTACATC
GCGCAGCAAGTCGCCGCGCGCTATCACCCGCGCGTGCTGCTCGCCGACGA
AGTGGGCCTCGGCAAGACCATCGAAGCCGGCCTCATCGTCCACCAGCAGT
TGTTGTGCGGGCGCGCGAAACGCGTGTTGATCATCGTGCCCGACAGCCTC
GTGCATCAATGGCTCGTGGAAATGCTGCGGCGTTTCAATCTGCATTTCAC
AATCCTCGACGAGGAGACGTGCGTGGCGATCGAGACCGGCGGCGACGAGG
ATGCGGAGGTGTCAGGCGACGAGGAGCCCGACAATCCGTTCGACAGCGCG
CAACTCGTACTGGCCGGATTATCC
back to top