mRNA_M-pyrifera_M_contig92492.21397.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92492.21397.1
Unique NamemRNA_M-pyrifera_M_contig92492.21397.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: A0A7W1JMA7_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1JMA7_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 4.800e-12
Identity = 52/173 (30.06%), Postives = 91/173 (52.60%), Query Frame = 1
Query:   16 VVTLYAGGQ-GGLVGSTLENKREYCLRHGCALYSPALLASTSEARQPARP-HYTKILGVLHALTSPSLAHAWVMWTDADAVFFNTSASPKVMVEE-VDVVLTWP---LNTGCFLVKNSEWSRQWLQDWFRHD--LDGPRAKESRWNDQGALIDLLATAPKAREKVAFVPYPLL 510
            VV+L AG +   +V  ++ENK  YC +HG             E+  P+RP  +TKI  +L A+ +PS  + W+ WTDAD++  N +   + +++E  + ++      +N G FL+KN +WS+++L++ + H   +D P      W  Q A+I      P  +  V ++P  L+
Sbjct:   25 VVSLAAGDEYQKIVNLSVENKNSYCQQHGYDFICG------KESLDPSRPIQWTKIPLILKAMENPS--YKWIFWTDADSLIMNLATPVEELIDEKYNFIIAKDFNGINAGQFLIKNCDWSKEFLKNIYAHTECIDHP------WWSQKAMIIEFEQKPPLQTFVKYIPQRLI 183          
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: A0A7W1JMM1_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1JMM1_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 4.660e-11
Identity = 55/167 (32.93%), Postives = 82/167 (49.10%), Query Frame = 1
Query:   16 VVTLYAGGQ-GGLVGSTLENKREYCLRHGCALYSPALLASTSEARQPARP-HYTKILGVLHALTSPSLAHAWVMWTDADAVFFNTSASPKVMVEEVD--VVLTWP--LNTGCFLVKNSEWSRQWLQDWFRHDLDGPRAKESRWNDQGALIDLLATAPKAREKVAFVP 498
            VVTL  G +   +V S +ENKR YC +HG             E     RP  ++KI  +L  + +PS  + W+ WTDADAV  N     + ++++    +V   P   NTG FL+KN EWSR++L+  + H        +  W +Q A+I  L T P+       +P
Sbjct:   24 VVTLAVGEEYKKVVSSGIENKRLYCQQHGYDFICG------EEILDYTRPIPWSKIQIILKTMENPS--YKWIFWTDADAVIMNHGIQLEDLIDDKYNFIVSRDPNNYNTGHFLIKNCEWSREFLKQIYSHT----ECIDHEWWEQQAVILELETKPELHSLTKVIP 178          
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: V6DGQ6_9BACT (Galactosyl transferase GMA12/MNN10 family n=2 Tax=Candidatus Babela massiliensis TaxID=673862 RepID=V6DGQ6_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 4.070e-8
Identity = 33/103 (32.04%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  223 WVMWTDADAVFFNTSASPKVMVEE-VDVVLTWP----LNTGCFLVKNSEWSRQWLQDWFRHDLDGPRAKESRWNDQGALIDLLATAPKAREKVAFVPYPLLAA 516
            W+ W D+DA+  N S   + +++E  D + T      +N+G FL+KN++WSR +L+ W+    +  +       D GALI +    PK +E +  VP  LL++
Sbjct:   89 WLFWLDSDALIMNDSIKLESIIDEDYDFITTRDCLRSMNSGQFLIKNTQWSRNFLKLWYSPKYEHTQVAPG--FDNGALIQIYQEHPKVKEHIKIVPQRLLSS 189          
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: A0A7W1YVK8_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1YVK8_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 2.440e-7
Identity = 40/138 (28.99%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   64 LENKREYCLRHGCALYSPALLASTSEARQPARPHYTKILGVLHALTSPSLAHAWVMWTDADAVFFNTSASPKVMVEE---VDVVLTWP-LNTGCFLVKNSEWSRQWLQDWFRHDLDGPRAKESRWNDQGALIDLLATA 465
            LENK+EYC +H    Y       + ++ +P    ++KIL VL A+ +    + W+ W+DAD++  N +   + ++++     + L  P +N+G FL++N EWSRQ+L++ +             W  Q  L++L  +A
Sbjct:   43 LENKKEYCTQHD---YDFIWSEKSQDSSRPIA--WSKILLVLKAMENSD--YEWIFWSDADSLVMNLAIPLEDIIDDKYDFIIALGGPQINSGQFLIRNCEWSRQFLRNVYARQ---ECINHIWWEQQAMLLELELSA 170          
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: A0A2R6X416_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X416_MARPO)

HSP 1 Score: 60.1 bits (144), Expect = 2.970e-7
Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   46 GLVGSTLENKREYCLRHGCALYSPALLASTSEARQPARPHYTKILGVLHALTSPSLAHAWVMWTDADAVFFNTSASPKVMVEEV----------DVVLTWPL---NTGCFLVKNSEWSRQWLQDWFRHDLDGPRAKESRWNDQGALIDLLATAPKA--REKVAFVP 498
            GL+     NK+ Y  RHG   Y     +   +  +P  P ++KIL +   L +    + WV W DAD+V  N S + + +++ +          D+++T  +   N G F ++N+EWSR +L  W+            +  D  AL  ++AT P+A  RE V   P
Sbjct:  132 GLMDLVTPNKQSYVERHG---YDFIDASDVLDRNRP--PSWSKILAMKKHLPN----YEWVFWNDADSVVTNPSITLEGIIDSIVGDVDWEHMPDLIVTKDVTGVNAGMFFMRNTEWSRNFLDLWWNQTSFVEPFGLCKSGDNSALKHIIATMPEAERREHVRIPP 288          
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: A0A176WI14_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WI14_MARPO)

HSP 1 Score: 60.1 bits (144), Expect = 3.390e-7
Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   46 GLVGSTLENKREYCLRHGCALYSPALLASTSEARQPARPHYTKILGVLHALTSPSLAHAWVMWTDADAVFFNTSASPKVMVEEV----------DVVLTWPL---NTGCFLVKNSEWSRQWLQDWFRHDLDGPRAKESRWNDQGALIDLLATAPKA--REKVAFVP 498
            GL+     NK+ Y  RHG   Y     +   +  +P  P ++KIL +   L +    + WV W DAD+V  N S + + +++ +          D+++T  +   N G F ++N+EWSR +L  W+            +  D  AL  ++AT P+A  RE V   P
Sbjct:  132 GLMDLVTPNKQSYVERHG---YDFIDASDVLDRNRP--PSWSKILAMKKHLPN----YEWVFWNDADSVVTNPSITLEGIIDSIVGDVDWEHMPDLIVTKDVTGVNAGMFFMRNTEWSRNFLDLWWNQTSFVEPFGLCKSGDNSALKHIIATMPEAERREHVRIPP 288          
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: A0A2T7CPE8_9POAL (Uncharacterized protein n=5 Tax=Panicum TaxID=4539 RepID=A0A2T7CPE8_9POAL)

HSP 1 Score: 59.7 bits (143), Expect = 4.440e-7
Identity = 44/122 (36.07%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   64 LENKREYCLRHGCAL-YSPALLASTSEARQPARPHYTKILGVLHALTSPSLAHAWVMWTDADAVFFNTSAS-PKVMVEEVDVVLT-WP-----------LNTGCFLVKNSEWSRQWLQDWFR 387
            L+NK +YC  HG  L Y+ ALL  +  A      ++ KI  V  A+ +   A  WV W DADAVF +   S P       ++VL  WP           LN G FL++N +WS  +L +W R
Sbjct:  141 LKNKVDYCRLHGVELLYNNALLEPSMAA------YWAKIPAVRAAMLAHPEAE-WVWWVDADAVFTDMDFSLPLAKYAAYNLVLYGWPKEVYERRRWLGLNAGVFLIRNCQWSLDFLDEWAR 255          
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: A0A4U6TJI8_SETVI (Uncharacterized protein n=1 Tax=Setaria viridis TaxID=4556 RepID=A0A4U6TJI8_SETVI)

HSP 1 Score: 58.5 bits (140), Expect = 1.110e-6
Identity = 52/151 (34.44%), Postives = 70/151 (46.36%), Query Frame = 1
Query:   64 LENKREYCLRHGCAL-YSPALLASTSEARQPARPHYTKILGVLHALTSPSLAHA---WVMWTDADAVF----FNTSASPKVMVEEVDVVLTWP-----------LNTGCFLVKNSEWSRQWLQDWFRHDLDGPRAKE-SRWNDQ--GALID 450
            L+NK +YC  HG  L Y+ ALL        P   ++ KI  V  A+    LAH    WV W DADAVF    F+   + K     + V+  WP           LN G FL++N +WS  +L +W R    GP   + + W  +  GAL D
Sbjct:  145 LKNKVDYCRLHGIELLYNNALL------EPPMVAYWAKIPAVRAAM----LAHPDAEWVWWVDADAVFTDMDFSLPLATKYAAYNL-VLYGWPKEVYENRRWLGLNAGVFLIRNCQWSLDFLDEWARM---GPAYPDYAAWGKKVKGALTD 281          
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: GT6_ORYSJ (Probable glycosyltransferase 6 n=9 Tax=Oryza TaxID=4527 RepID=GT6_ORYSJ)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-6
Identity = 57/176 (32.39%), Postives = 81/176 (46.02%), Query Frame = 1
Query:   37 GQGG--LVGSTLENKREYCLRHGCAL-YSPALLASTSEARQPARPHYTKILGVLHALTSPSLAHA---WVMWTDADAVFFNTSAS-PKVMVEEVDVVL-----------TWP-LNTGCFLVKNSEWSRQWLQDWFR---------------HD-LDGPRAKESRWNDQGALIDLLA 459
            G+GG  L+   L+NK +YC  HG  L Y+ ALL          +P        + A+ +  LAH    WV W DADAVF +   S P    ++ ++V+           +W  LN G FL++N +WS  ++  W R               HD L G   KES  +DQ AL+ LL+
Sbjct:  166 GEGGDHLLFRFLKNKVDYCRLHGVELLYNNALL----------QPRMLAYWAKIPAVRAAMLAHPDAEWVWWVDADAVFTDMDFSLPLHKYKDHNLVVYGWNKEVYGERSWVGLNAGVFLIRNCQWSLDFMDAWARMGPASPEYARWGSVLHDTLRGKSDKES--DDQSALVYLLS 329          
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Match: A0A168HVJ0_MUCCL (Glycosyltransferase family 34 protein n=2 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A168HVJ0_MUCCL)

HSP 1 Score: 56.6 bits (135), Expect = 3.760e-6
Identity = 41/147 (27.89%), Postives = 71/147 (48.30%), Query Frame = 1
Query:   70 NKREYCLRHGCALYSPALLASTSEARQPARPHYTK-ILGVLHALTSPSLAHAWVMWTDADAVFFNTSASPKVMVEEVDV------VLTWP-----LNTGCFLVKNSEWSRQWLQD------WFRHDLDGPRAKESRWNDQGALIDLL 456
            NKR Y  +HG A  +     S   A+Q  RP   + + G +  +      + WV W D DAV  N++ + + +++ +++      V+  P     +N G FL++N+ WS Q+LQ+      W+R    GP        +QGA+ D++
Sbjct:   95 NKRSYADKHGYAFVA----RSREFAQQALRPDQRRTVWGKIDVIQKVLPKYDWVFWLDMDAVVMNSAQTIEALLQRLEINDSTHFVIVRPGTDKMINAGVFLIRNTAWSFQFLQEIQNQSEWYRQ---GPSY------EQGAMWDVM 228          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92492.21397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W1JMA7_9BACT4.800e-1230.06Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A7W1JMM1_9BACT4.660e-1132.93Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
V6DGQ6_9BACT4.070e-832.04Galactosyl transferase GMA12/MNN10 family n=2 Tax=... [more]
A0A7W1YVK8_9BACT2.440e-728.99Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A2R6X416_MARPO2.970e-728.31Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A176WI14_MARPO3.390e-728.31Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A2T7CPE8_9POAL4.440e-736.07Uncharacterized protein n=5 Tax=Panicum TaxID=4539... [more]
A0A4U6TJI8_SETVI1.110e-634.44Uncharacterized protein n=1 Tax=Setaria viridis Ta... [more]
GT6_ORYSJ1.530e-632.39Probable glycosyltransferase 6 n=9 Tax=Oryza TaxID... [more]
A0A168HVJ0_MUCCL3.760e-627.89Glycosyltransferase family 34 protein n=2 Tax=Muco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92492contigM-pyrifera_M_contig92492:30..725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog673862.BABL1_265
Hectar predicted targeting categoryother localisation
EggNOG OGs1NGK1@1224,2EHHS@1,33B9Q@2
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size594
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.9653375-CDS-M-pyrifera_M_contig92492:29..3391622816837.9653375-CDS-M-pyrifera_M_contig92492:29..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92492 30..339 -
1692278208.096062-CDS-M-pyrifera_M_contig92492:29..3391692278208.096062-CDS-M-pyrifera_M_contig92492:29..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92492 30..339 -
1622816837.9759116-CDS-M-pyrifera_M_contig92492:441..7251622816837.9759116-CDS-M-pyrifera_M_contig92492:441..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92492 442..725 -
1692278208.1065419-CDS-M-pyrifera_M_contig92492:441..7251692278208.1065419-CDS-M-pyrifera_M_contig92492:441..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92492 442..725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92492.21397.1prot_M-pyrifera_M_contig92492.21397.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92492 30..725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92492.21397.1

>prot_M-pyrifera_M_contig92492.21397.1 ID=prot_M-pyrifera_M_contig92492.21397.1|Name=mRNA_M-pyrifera_M_contig92492.21397.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=198bp
GAAFGVVTLYAGGQGGLVGSTLENKREYCLRHGCALYSPALLASTSEARQ
PARPHYTKILGVLHALTSPSLAHAWVMWTDADAVFFNTSASPKVMVEEVD
VVLTWPLNTGCFLVKNSEWSRQWLQDWFRHDLDGPRAKESRWNDQGALID
LLATAPKAREKVAFVPYPLLAAEWPWYATSSWQVHTPGRPMPQKIDIL
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mRNA from alignment at M-pyrifera_M_contig92492:30..725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92492.21397.1 ID=mRNA_M-pyrifera_M_contig92492.21397.1|Name=mRNA_M-pyrifera_M_contig92492.21397.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig92492:30..725- (Macrocystis pyrifera P11B4 male)
GGAGCTGCGTTTGGGGTGGTGACGCTGTACGCGGGGGGGCAGGGTGGGTT GGTGGGGTCGACGCTGGAGAACAAGCGGGAGTATTGCTTGCGGCACGGGT GCGCTCTGTACAGCCCGGCCTTGTTGGCTTCGACGTCTGAAGCGCGGCAG CCTGCGCGGCCGCACTACACCAAGATACTGGGGGTGTTGCATGCGCTGAC TTCTCCTTCGCTGGCGCATGCGTGGGTGATGTGGACGGATGCAGATGCCG TCTTCTTCAACACGTCAGCGTCACCAAAAGTGATGTTGCAAGAATCGCTG CAAGCGGCCATTCCGGGGTGGGAGGTGGCCATGCACGATTTCCCTGCGCC AGAACACCCGTTTCCGTCGCTTTCTGCGGGCGTAAGGGTGGAGGAGGTGG ATGTGGTGTTGACGTGGCCTCTGAACACGGGGTGTTTTTTGGTGAAAAAC TCGGAATGGTCGCGCCAGTGGCTGCAAGACTGGTTTCGCCACGATCTGGA CGGCCCACGCGCCAAAGAATCACGATGGAACGACCAAGGCGCCCTCATTG ACCTTCTCGCCACCGCTCCCAAGGCCAGGGAAAAAGTCGCATTCGTCCCT TACCCACTCCTCGCCGCCGAATGGCCTTGGTACGCCACCAGCAGCTGGCA AGTCCACACCCCAGGCAGACCCATGCCCCAGAAAATCGACATCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92492:30..725-

>mRNA_M-pyrifera_M_contig92492.21397.1 ID=mRNA_M-pyrifera_M_contig92492.21397.1|Name=mRNA_M-pyrifera_M_contig92492.21397.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1188bp|location=Sequence derived from alignment at M-pyrifera_M_contig92492:30..725- (Macrocystis pyrifera P11B4 male)
GGAGCTGCGTTTGGGGTGGTGACGCTGTACGCGGGGGGGCAGGGTGGGTT
GGTGGGGTCGACGCTGGAGAACAAGCGGGAGTATTGCTTGCGGCACGGGT
GCGCTCTGTACAGCCCGGCCTTGTTGGCTTCGACGTCTGAAGCGCGGCAG
CCTGCGCGGCCGCACTACACCAAGATACTGGGGGTGTTGCATGCGCTGAC
TTCTCCTTCGCTGGCGCATGCGTGGGTGATGTGGACGGATGCAGATGCCG
TCTTCTTCAACACGTCAGCGTCACCAAAAGTGATGGAGCTGCGTTTGGGG
TGGTGACGCTGTACGCGGGGGGGCAGGGTGGGTTGGTGGGGTCGACGCTG
GAGAACAAGCGGGAGTATTGCTTGCGGCACGGGTGCGCTCTGTACAGCCC
GGCCTTGTTGGCTTCGACGTCTGAAGCGCGGCAGCCTGCGCGGCCGCACT
ACACCAAGATACTGGGGGTGTTGCATGCGCTGACTTCTCCTTCGCTGGCG
CATGCGTGGGTGATGTGGACGGATGCAGATGCCGTCTTCTTCAACACGTC
AGCGTCACCAAAAGTGATGGTGGAGGAGGTGGATGTGGTGTTGACGTGGC
CTCTGAACACGGGGTGTTTTTTGGTGAAAAACTCGGAATGGTCGCGCCAG
TGGCTGCAAGACTGGTTTCGCCACGATCTGGACGGCCCACGCGCCAAAGA
ATCACGATGGAACGACCAAGGCGCCCTCATTGACCTTCTCGCCACCGCTC
CCAAGGCCAGGGAAAAAGTCGCATTCGTCCCTTACCCACTCCTCGCCGCC
GAATGGCCTTGGTACGCCACCAGCAGCTGGCAAGTCCACACCCCAGGCAG
ACCCATGCCCCAGAAAATCGACATCCTCGGTGGAGGAGGTGGATGTGGTG
TTGACGTGGCCTCTGAACACGGGGTGTTTTTTGGTGAAAAACTCGGAATG
GTCGCGCCAGTGGCTGCAAGACTGGTTTCGCCACGATCTGGACGGCCCAC
GCGCCAAAGAATCACGATGGAACGACCAAGGCGCCCTCATTGACCTTCTC
GCCACCGCTCCCAAGGCCAGGGAAAAAGTCGCATTCGTCCCTTACCCACT
CCTCGCCGCCGAATGGCCTTGGTACGCCACCAGCAGCTGGCAAGTCCACA
CCCCAGGCAGACCCATGCCCCAGAAAATCGACATCCTC
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