mRNA_M-pyrifera_M_contig92491.21396.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92491.21396.1
Unique NamemRNA_M-pyrifera_M_contig92491.21396.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92491.21396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92491contigM-pyrifera_M_contig92491:301..753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.923217-UTR-M-pyrifera_M_contig92491:300..3301622816837.923217-UTR-M-pyrifera_M_contig92491:300..330Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92491 301..330 +
1692278208.0773904-UTR-M-pyrifera_M_contig92491:300..3301692278208.0773904-UTR-M-pyrifera_M_contig92491:300..330Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92491 301..330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.9348574-CDS-M-pyrifera_M_contig92491:330..7531622816837.9348574-CDS-M-pyrifera_M_contig92491:330..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92491 331..753 +
1692278208.0869305-CDS-M-pyrifera_M_contig92491:330..7531692278208.0869305-CDS-M-pyrifera_M_contig92491:330..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92491 331..753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92491.21396.1prot_M-pyrifera_M_contig92491.21396.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92491 331..753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92491.21396.1

>prot_M-pyrifera_M_contig92491.21396.1 ID=prot_M-pyrifera_M_contig92491.21396.1|Name=mRNA_M-pyrifera_M_contig92491.21396.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MAVSFRLMEHKDLVQVMHLHRFLEVRYPRRFFERLVAGGDGEDVWLWERS
DERLAVVAEVGGSVVGVVSAYVAAIEADSFLGWVWGTFVESLGNEMYVMT
LAVEEGYRKRGLGRRLVEEVITKGREMLEPKLGRVERVRLH
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mRNA from alignment at M-pyrifera_M_contig92491:301..753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92491.21396.1 ID=mRNA_M-pyrifera_M_contig92491.21396.1|Name=mRNA_M-pyrifera_M_contig92491.21396.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig92491:301..753+ (Macrocystis pyrifera P11B4 male)
GAAGGGGTTGCGTCTGTTGGGGACAATAGCATGGCTGTTTCGTTCCGCCT
CATGGAGCACAAGGACCTTGTGCAAGTGATGCACCTGCACCGTTTCTTGG
AAGTGCGCTACCCGCGTCGGTTCTTTGAAAGGCTGGTGGCTGGAGGCGAT
GGGGAGGACGTGTGGCTTTGGGAGCGAAGCGACGAGCGGCTGGCGGTGGT
TGCGGAGGTTGGGGGGAGCGTGGTGGGGGTGGTGTCCGCGTACGTCGCCG
CAATCGAGGCAGACTCATTTTTGGGGTGGGTTTGGGGCACATTCGTGGAA
TCCCTGGGGAATGAGATGTACGTGATGACGCTGGCAGTGGAGGAGGGGTA
CAGGAAGCGAGGGTTGGGCAGGAGGCTGGTGGAGGAGGTCATAACAAAAG
GAAGAGAGATGTTGGAGCCGAAACTGGGGAGGGTGGAGAGGGTGAGGCTT
CAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92491:301..753+

>mRNA_M-pyrifera_M_contig92491.21396.1 ID=mRNA_M-pyrifera_M_contig92491.21396.1|Name=mRNA_M-pyrifera_M_contig92491.21396.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig92491:301..753+ (Macrocystis pyrifera P11B4 male)
ATGGCTGTTTCGTTCCGCCTCATGGAGCACAAGGACCTTGTGCAAGTGAT
GCACCTGCACCGTTTCTTGGAAGTGCGCTACCCGCGTCGGTTCTTTGAAA
GGCTGGTGGCTGGAGGCGATGGGGAGGACGTGTGGCTTTGGGAGCGAAGC
GACGAGCGGCTGGCGGTGGTTGCGGAGGTTGGGGGGAGCGTGGTGGGGGT
GGTGTCCGCGTACGTCGCCGCAATCGAGGCAGACTCATTTTTGGGGTGGG
TTTGGGGCACATTCGTGGAATCCCTGGGGAATGAGATGTACGTGATGACG
CTGGCAGTGGAGGAGGGGTACAGGAAGCGAGGGTTGGGCAGGAGGCTGGT
GGAGGAGGTCATAACAAAAGGAAGAGAGATGTTGGAGCCGAAACTGGGGA
GGGTGGAGAGGGTGAGGCTTCATATGGCTGTTTCGTTCCGCCTCATGGAG
CACAAGGACCTTGTGCAAGTGATGCACCTGCACCGTTTCTTGGAAGTGCG
CTACCCGCGTCGGTTCTTTGAAAGGCTGGTGGCTGGAGGCGATGGGGAGG
ACGTGTGGCTTTGGGAGCGAAGCGACGAGCGGCTGGCGGTGGTTGCGGAG
GTTGGGGGGAGCGTGGTGGGGGTGGTGTCCGCGTACGTCGCCGCAATCGA
GGCAGACTCATTTTTGGGGTGGGTTTGGGGCACATTCGTGGAATCCCTGG
GGAATGAGATGTACGTGATGACGCTGGCAGTGGAGGAGGGGTACAGGAAG
CGAGGGTTGGGCAGGAGGCTGGTGGAGGAGGTCATAACAAAAGGAAGAGA
GATGTTGGAGCCGAAACTGGGGAGGGTGGAGAGGGTGAGGCTTCAT
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