mRNA_M-pyrifera_M_contig92467.21391.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92467.21391.1
Unique NamemRNA_M-pyrifera_M_contig92467.21391.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92467.21391.1 vs. uniprot
Match: A0A7S4IE77_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IE77_9EUKA)

HSP 1 Score: 139 bits (349), Expect = 2.110e-37
Identity = 63/175 (36.00%), Postives = 111/175 (63.43%), Query Frame = 1 
Query:    1 RAFDRYNVRWWLDFTSLQGVAVQSGELFPWEHSVQVGVLQEDFEKYYEKVLARLHDCADADKPVFWDAYTSA--SLKGKFQLKGEPRFWMDVSPWKTVPGEAGDMLVKAGWKRGDSHPEVV--DVPRKDVLPLLPVKLLGVQCFMPAQPAAILDRRYGA-QWREATPPPYYRPDL 510
            + FDR+ ++WW+DF +L+   +Q G++ PW++ ++V V+++ F +YY +V+  LH C D + P+++  ++ +  +L+GKFQ+K EPRFW++++PW     E  +ML KAGW R +   + +  ++P   + P+  VK       +PAQP  +L+ R+G  +W    PP YY+PDL
Sbjct:  101 KIFDRHRIKWWIDFNTLRSAVLQ-GKILPWDYQLEVSVIEKRFRQYYPQVMEELHQCGDPNSPLYYKRFSESDENLRGKFQVKWEPRFWIEITPWNH--DEKENMLRKAGWGRSEKEQKQMYTELPYNYIHPIGDVKFNNTIVPVPAQPYKVLNARFGKDEWGTLEPPSYYQPDL 272
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BLAST of mRNA_M-pyrifera_M_contig92467.21391.1 vs. uniprot
Match: UPI00148A7410 (fukutin-related protein-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A7410)

HSP 1 Score: 55.5 bits (132), Expect = 6.960e-6
Identity = 39/152 (25.66%), Postives = 70/152 (46.05%), Query Frame = 1 
Query:    7 FDRYNVRWWLDFTSLQGVAVQSGELFPWEHSVQVGVLQEDFEKYYEKVLARLHDCADADKPVFWDAYTSASLKGKFQLKGEPRFWMDVSPWKTVPGEAGDMLVKAGWKRGDSHPEVVDVPRKDVLPLLPVKLLGVQCFMPAQPAAILDRRYG 462
            F  Y++R+WL+  SL G A +SG++ PW+ SV +G+  ED  K  + V    ++  D +K   W+          F      R ++ + P+ +  G    ++ K  W +  SH + V+ P   + PL  +  +G     P      L+ ++G
Sbjct:  333 FSNYSMRYWLEGGSLLGAA-RSGDIIPWDISVDIGIYMEDIPKCQQLVKTGNYEFID-EKGFLWEKAEEGEFYRVFYSVTN-RNYIQIFPFYSKNG----IMTKDFWFK--SHKQDVEFPEHFLKPLSTIAFIGKNVSAPNHVQEFLELKFG 475
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92467.21391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4IE77_9EUKA2.110e-3736.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI00148A74106.960e-625.66fukutin-related protein-like n=1 Tax=Crassostrea g... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92467contigM-pyrifera_M_contig92467:110..619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog10228.TriadP14979
Preferred nameFKRP
KEGG koko:K19873
KEGG Pathwayko00515,ko01100,map00515,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005791,GO:0005794,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006493,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016485,GO:0019538,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042383,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein O-linked mannosylation
EggNOG OGs28NJB@1,2QV4Y@2759,38FW4@33154,3BDHB@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.7437887-CDS-M-pyrifera_M_contig92467:109..6191622816837.7437887-CDS-M-pyrifera_M_contig92467:109..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92467 110..619 -
1692278207.9935753-CDS-M-pyrifera_M_contig92467:109..6191692278207.9935753-CDS-M-pyrifera_M_contig92467:109..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92467 110..619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92467.21391.1prot_M-pyrifera_M_contig92467.21391.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92467 110..619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92467.21391.1

>prot_M-pyrifera_M_contig92467.21391.1 ID=prot_M-pyrifera_M_contig92467.21391.1|Name=mRNA_M-pyrifera_M_contig92467.21391.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
RAFDRYNVRWWLDFTSLQGVAVQSGELFPWEHSVQVGVLQEDFEKYYEKV
LARLHDCADADKPVFWDAYTSASLKGKFQLKGEPRFWMDVSPWKTVPGEA
GDMLVKAGWKRGDSHPEVVDVPRKDVLPLLPVKLLGVQCFMPAQPAAILD
RRYGAQWREATPPPYYRPDL
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mRNA from alignment at M-pyrifera_M_contig92467:110..619-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92467.21391.1 ID=mRNA_M-pyrifera_M_contig92467.21391.1|Name=mRNA_M-pyrifera_M_contig92467.21391.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig92467:110..619- (Macrocystis pyrifera P11B4 male)
AGAGCGTTCGACCGCTACAATGTGCGGTGGTGGCTGGACTTCACGAGCCT
GCAGGGGGTTGCGGTGCAGAGCGGCGAGCTCTTCCCCTGGGAGCACAGCG
TGCAGGTGGGCGTGCTGCAGGAGGACTTCGAGAAGTACTACGAGAAGGTG
CTGGCCCGCCTGCACGACTGCGCAGATGCGGACAAGCCAGTCTTCTGGGA
CGCCTACACCAGCGCATCGCTGAAGGGCAAGTTCCAGCTCAAGGGCGAGC
CACGCTTCTGGATGGACGTCTCGCCCTGGAAGACGGTGCCAGGCGAGGCA
GGCGACATGCTCGTCAAGGCAGGCTGGAAGCGCGGCGACAGCCACCCCGA
GGTGGTGGACGTGCCGCGCAAGGACGTGCTGCCGCTGCTGCCCGTCAAGC
TGCTGGGCGTGCAGTGCTTCATGCCCGCGCAGCCCGCGGCCATCCTCGAC
CGCCGCTACGGAGCTCAGTGGCGCGAGGCAACGCCGCCCCCGTACTACCG
CCCCGACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92467:110..619-

>mRNA_M-pyrifera_M_contig92467.21391.1 ID=mRNA_M-pyrifera_M_contig92467.21391.1|Name=mRNA_M-pyrifera_M_contig92467.21391.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig92467:110..619- (Macrocystis pyrifera P11B4 male)
AGAGCGTTCGACCGCTACAATGTGCGGTGGTGGCTGGACTTCACGAGCCT
GCAGGGGGTTGCGGTGCAGAGCGGCGAGCTCTTCCCCTGGGAGCACAGCG
TGCAGGTGGGCGTGCTGCAGGAGGACTTCGAGAAGTACTACGAGAAGGTG
CTGGCCCGCCTGCACGACTGCGCAGATGCGGACAAGCCAGTCTTCTGGGA
CGCCTACACCAGCGCATCGCTGAAGGGCAAGTTCCAGCTCAAGGGCGAGC
CACGCTTCTGGATGGACGTCTCGCCCTGGAAGACGGTGCCAGGCGAGGCA
GGCGACATGCTCGTCAAGGCAGGCTGGAAGCGCGGCGACAGCCACCCCGA
GGTGGTGGACGTGCCGCGCAAGGACGTGCTGCCGCTGCTGCCCGTCAAGC
TGCTGGGCGTGCAGTGCTTCATGCCCGCGCAGCCCGCGGCCATCCTCGAC
CGCCGCTACGGAGCTCAGTGGCGCGAGGCAACGCCGCCCCCGTACTACCG
CCCCGACCTCAGAGCGTTCGACCGCTACAATGTGCGGTGGTGGCTGGACT
TCACGAGCCTGCAGGGGGTTGCGGTGCAGAGCGGCGAGCTCTTCCCCTGG
GAGCACAGCGTGCAGGTGGGCGTGCTGCAGGAGGACTTCGAGAAGTACTA
CGAGAAGGTGCTGGCCCGCCTGCACGACTGCGCAGATGCGGACAAGCCAG
TCTTCTGGGACGCCTACACCAGCGCATCGCTGAAGGGCAAGTTCCAGCTC
AAGGGCGAGCCACGCTTCTGGATGGACGTCTCGCCCTGGAAGACGGTGCC
AGGCGAGGCAGGCGACATGCTCGTCAAGGCAGGCTGGAAGCGCGGCGACA
GCCACCCCGAGGTGGTGGACGTGCCGCGCAAGGACGTGCTGCCGCTGCTG
CCCGTCAAGCTGCTGGGCGTGCAGTGCTTCATGCCCGCGCAGCCCGCGGC
CATCCTCGACCGCCGCTACGGAGCTCAGTGGCGCGAGGCAACGCCGCCCC
CGTACTACCGCCCCGACCTC
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