mRNA_M-pyrifera_M_contig9244.21389.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9244.21389.1
Unique NamemRNA_M-pyrifera_M_contig9244.21389.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: D8LT05_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT05_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 7.070e-87
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 3 
Query:   90 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 509
            MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLV+GSNRRVHGVSKHVGMAVAG+ ADARQIVY GRDEVA YIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG
Sbjct:    1 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVAGSNRRVHGVSKHVGMAVAGLSADARQIVYRGRDEVAGYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 140
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BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: A0A6H5KIY3_9PHAE (Proteasome subunit alpha type n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY3_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 3.170e-74
Identity = 128/180 (71.11%), Postives = 130/180 (72.22%), Query Frame = 3 
Query:  111 YDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRR-----------------------------------------------VHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 509
            YDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLV+GSNRR                                               VHGVSKHVGMAVAG+ ADARQIVY GRDEVA YIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG
Sbjct:    4 YDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVAGSNRRASDETDFLVVGFVRNGRILGVCLDSFAALPSEARATQVAAGRVVHSRVHGVSKHVGMAVAGLSADARQIVYRGRDEVAGYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 183
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BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: A0A835ZEM3_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM3_9STRA)

HSP 1 Score: 207 bits (528), Expect = 9.940e-65
Identity = 100/140 (71.43%), Postives = 120/140 (85.71%), Query Frame = 3 
Query:   90 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 509
            MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTA+G++CKDG+LLAVEKLL+SK+LV G+N+RVH V+  +G+AV G+ AD RQIV   RDE A Y E+YG  + P +L +R++ YVHYFT+HGSLRPFGAS L+AG
Sbjct:    1 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAIGIKCKDGILLAVEKLLLSKLLVPGTNKRVHHVTPRIGVAVTGLTADTRQIVNRARDEAANYKESYGDYISPKLLTERVSNYVHYFTMHGSLRPFGASTLIAG 140
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BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: K8YS01_NANGC (Proteasome subunit alpha type n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YS01_NANGC)

HSP 1 Score: 201 bits (511), Expect = 4.770e-62
Identity = 97/140 (69.29%), Postives = 120/140 (85.71%), Query Frame = 3 
Query:   90 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 509
            MSSTGAGYD+S TTFSPDG++FQVEYA KAVENSGTA+G++CKDGV+LAVE L++SK+LVS SNRR + V  H+ +AVAG+ +D RQ+V   R+E   Y +NYGS MPP++LADRLAQ+VHYFTL+ SLRPFGASVL+AG
Sbjct:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAG 140
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BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: A0A1W0AAI8_9STRA (Proteasome subunit alpha type-3 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1W0AAI8_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.200e-61
Identity = 93/140 (66.43%), Postives = 121/140 (86.43%), Query Frame = 3 
Query:   90 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 509
            MSSTGAGYDLSA TFSPDG+IFQVEYA KAVE+SGTA+G+ C DGV++ VEK+L+SKMLV G++RR+H V +HVG+A+AG+ AD RQ+V   R+E + Y +NYGS +PP +LADR++QYVHYFTL+GS+RPFG S+++AG
Sbjct:    1 MSSTGAGYDLSAGTFSPDGRIFQVEYAKKAVESSGTAIGIHCTDGVVMGVEKILLSKMLVPGTHRRIHAVDRHVGLAMAGLVADGRQLVNRAREEASGYKKNYGSAIPPQILADRMSQYVHYFTLYGSVRPFGTSIMLAG 140
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BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: A0A067BVI4_SAPPC (PROTEASOME_ALPHA_1 domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BVI4_SAPPC)

HSP 1 Score: 197 bits (501), Expect = 1.220e-60
Identity = 91/140 (65.00%), Postives = 120/140 (85.71%), Query Frame = 3 
Query:   90 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 509
            MSSTGAGYDLS  TFSPDG+IFQVEYA KAVE+SGTA+G+ C DGV++ VEK+L+SKMLV G++RRVH + +H+G+A+AG+ AD RQ+V   R+E + Y +NYGS +PP +LADR++QYVHYFTL+GS+RPFG S+++AG
Sbjct:    1 MSSTGAGYDLSVGTFSPDGRIFQVEYAKKAVESSGTAIGIHCTDGVVMGVEKILLSKMLVPGTHRRVHAIDRHIGLAMAGLVADGRQLVNRAREEASGYKKNYGSPIPPQVLADRMSQYVHYFTLYGSVRPFGTSIMLAG 140
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BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: K3W7I2_GLOUD (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7I2_GLOUD)

HSP 1 Score: 197 bits (500), Expect = 1.900e-60
Identity = 90/140 (64.29%), Postives = 121/140 (86.43%), Query Frame = 3 
Query:   90 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 509
            MSSTGAGYDLSA TFSPDG+IFQVEYA KAVENSGTA+G++C DG+++ VEK L+SKMLV+G++RRV+ + +HVG+++AG+ AD RQ+V   R+E  +Y +NYGS +PP +LADR+ QYVHY+TL+GS+RPFG S+++AG
Sbjct:    1 MSSTGAGYDLSAGTFSPDGRIFQVEYAKKAVENSGTAIGIKCTDGIIMGVEKTLLSKMLVAGTHRRVYAIDRHVGLSMAGLVADGRQLVNRAREEALSYKKNYGSAIPPHVLADRMGQYVHYYTLYGSIRPFGTSIMLAG 140
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BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: A0A6G0W5Q8_9STRA (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5Q8_9STRA)

HSP 1 Score: 205 bits (522), Expect = 4.070e-60
Identity = 94/143 (65.73%), Postives = 126/143 (88.11%), Query Frame = 3 
Query:   81 QNKMSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 509
            Q++MSSTGAGYDLSA TFSPDG+IFQVEYA KAVENSGTA+G+ CKDGV++ VEK+L+SKMLV+G++RR+H + +HVG+A++G+ AD RQ+V   R+E + Y +NYGS +PP +LADR++QYVHYFTL+GS+RPFG S+++AG
Sbjct:  345 QDEMSSTGAGYDLSAGTFSPDGRIFQVEYAKKAVENSGTAIGIHCKDGVVMGVEKILLSKMLVAGTHRRIHAIDRHVGLAMSGLVADGRQLVNRAREEASGYKKNYGSPIPPQVLADRMSQYVHYFTLYGSVRPFGTSIMLAG 487
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BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: A0A024TZG3_9STRA (PROTEASOME_ALPHA_1 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZG3_9STRA)

HSP 1 Score: 204 bits (519), Expect = 7.400e-60
Identity = 93/140 (66.43%), Postives = 123/140 (87.86%), Query Frame = 3 
Query:   90 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG 509
            MSSTGAGYDLSA TFSPDG+IFQVEYA KAVENSGTA+G+ CKDGV++ VEK+L+SK+LV G++RR+H + +HVG+A++G+ AD RQ+V   R+E A+Y +NYGS +PP MLADR++QYVHY+TL+GS+RPFG S+++AG
Sbjct:  325 MSSTGAGYDLSAGTFSPDGRIFQVEYAKKAVENSGTAIGINCKDGVVMGVEKILLSKLLVPGTHRRIHAIDRHVGLAISGLVADGRQLVNRAREEAASYKKNYGSPIPPQMLADRMSQYVHYYTLYGSVRPFGTSIMLAG 464
[Close]
BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Match: A0A7S4E6P3_9STRA (Proteasome subunit alpha type n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6P3_9STRA)

HSP 1 Score: 193 bits (491), Expect = 4.770e-59
Identity = 93/139 (66.91%), Postives = 115/139 (82.73%), Query Frame = 3 
Query:   90 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVA 506
            M+STGAGYDLS TTFSPDG+IFQVEYATKAVENSGT +G+RC DGV+L VEK+++SKML+  SNRRV  V+ H G+A AG  AD RQ+V   RDE  +Y + YG ++PPS+LA RLA+YVHYFT+HG+LRPFGAS ++A
Sbjct:    1 MASTGAGYDLSPTTFSPDGRIFQVEYATKAVENSGTVVGIRCADGVVLGVEKVMLSKMLLPSSNRRVAAVAPHAGVAQAGSTADGRQVVARARDECDSYDDTYGIEIPPSVLAQRLAEYVHYFTIHGALRPFGASTMIA 139
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9244.21389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT05_ECTSI7.070e-8796.43Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
A0A6H5KIY3_9PHAE3.170e-7471.11Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
A0A835ZEM3_9STRA9.940e-6571.43Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
K8YS01_NANGC4.770e-6269.29Proteasome subunit alpha type n=2 Tax=Nannochlorop... [more]
A0A1W0AAI8_9STRA2.200e-6166.43Proteasome subunit alpha type-3 n=2 Tax=Saprolegni... [more]
A0A067BVI4_SAPPC1.220e-6065.00PROTEASOME_ALPHA_1 domain-containing protein n=4 T... [more]
K3W7I2_GLOUD1.900e-6064.29PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A6G0W5Q8_9STRA4.070e-6065.73PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A024TZG3_9STRA7.400e-6066.43PROTEASOME_ALPHA_1 domain-containing protein n=2 T... [more]
A0A7S4E6P3_9STRA4.770e-5966.91Proteasome subunit alpha type n=1 Tax=Pelagomonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9244contigM-pyrifera_M_contig9244:7031..11197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.8
Seed ortholog evalue1.2e-68
Seed eggNOG ortholog2880.D8LT05
Preferred namePSMA3
KEGG koko:K01537,ko:K02727,ko:K03868
KEGG TC3.A.3.2
KEGG Pathwayko03050,ko03420,ko04066,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05200,ko05211,map03050,map03420,map04066,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05200,map05211
KEGG ModuleM00337,M00340,M00379,M00380,M00381,M00382,M00383,M00384,M00385,M00386,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000502,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007088,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009888,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016579,GO:0019222,GO:0019538,GO:0019773,GO:0019899,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030071,GO:0030154,GO:0030162,GO:0030163,GO:0030707,GO:0030855,GO:0031090,GO:0031331,GO:0031597,GO:0031625,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048046,GO:0048468,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051246,GO:0051247,GO:0051336,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0062033,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
EggNOG OGsCOG0638@1,KOG0184@2759
EC2.3.2.32,3.4.25.1,3.6.3.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko03400,ko04121
Exons4
Model size512
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9244.21389.1prot_M-pyrifera_M_contig9244.21389.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9244 7120..11197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.6258247-UTR-M-pyrifera_M_contig9244:7030..71191622816837.6258247-UTR-M-pyrifera_M_contig9244:7030..7119Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9244 7031..7119 +
1692278207.9206562-UTR-M-pyrifera_M_contig9244:7030..71191692278207.9206562-UTR-M-pyrifera_M_contig9244:7030..7119Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9244 7031..7119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.6393373-CDS-M-pyrifera_M_contig9244:7119..71401622816837.6393373-CDS-M-pyrifera_M_contig9244:7119..7140Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9244 7120..7140 +
1692278207.9361026-CDS-M-pyrifera_M_contig9244:7119..71401692278207.9361026-CDS-M-pyrifera_M_contig9244:7119..7140Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9244 7120..7140 +
1622816837.650233-CDS-M-pyrifera_M_contig9244:9134..91821622816837.650233-CDS-M-pyrifera_M_contig9244:9134..9182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9244 9135..9182 +
1692278207.9472103-CDS-M-pyrifera_M_contig9244:9134..91821692278207.9472103-CDS-M-pyrifera_M_contig9244:9134..9182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9244 9135..9182 +
1622816837.6620982-CDS-M-pyrifera_M_contig9244:9507..96321622816837.6620982-CDS-M-pyrifera_M_contig9244:9507..9632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9244 9508..9632 +
1692278207.957714-CDS-M-pyrifera_M_contig9244:9507..96321692278207.957714-CDS-M-pyrifera_M_contig9244:9507..9632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9244 9508..9632 +
1622816837.6743448-CDS-M-pyrifera_M_contig9244:10968..111971622816837.6743448-CDS-M-pyrifera_M_contig9244:10968..11197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9244 10969..11197 +
1692278207.9688764-CDS-M-pyrifera_M_contig9244:10968..111971692278207.9688764-CDS-M-pyrifera_M_contig9244:10968..11197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9244 10969..11197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9244.21389.1

>prot_M-pyrifera_M_contig9244.21389.1 ID=prot_M-pyrifera_M_contig9244.21389.1|Name=mRNA_M-pyrifera_M_contig9244.21389.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAV
EKLLISKMLVSGSNRRVHGVSKHVGMAVAGVGADARQIVYHGRDEVATYI
ENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAG*
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mRNA from alignment at M-pyrifera_M_contig9244:7031..11197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9244.21389.1 ID=mRNA_M-pyrifera_M_contig9244.21389.1|Name=mRNA_M-pyrifera_M_contig9244.21389.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4167bp|location=Sequence derived from alignment at M-pyrifera_M_contig9244:7031..11197+ (Macrocystis pyrifera P11B4 male)
TGGAAATAGTAGAGTACAGGAAGGAGAGCTTTTGGAAAGAGTTGCGTTGC
CTTAGTTTCTAGGGTTCGACAGCTTCTTTACAGAACAAGATGAGCAGCAC
TGGAGCAGGGGTGAGAGAAATTACCACTGAATAGCGAGGCAACGGCCTCT
CCCTTTAGCACGCAATGGTACTGCTACTGCTGTGCAGCCTGTGCAGCGTC
TGCTGTTGCAAAGGAGGACGAGCAAGCTCGTTTGACGAGCCCCTCTAGTC
GACGGTACTTCCGACTTGCCGGATGTGAGGATCCATTCTAGACCCCAGAC
AGAGCTTATTAGTATCTGCGACAGCTATCCTCGAGCGCTCGATGAAAGCC
TTCGAACGGCGATGTCAGCTCTAATGCCTGACCCCGAGTTCGACATGTCA
ATCAAAGAAGCTAGACATTGCTTGATAGTAATCCCCGCAACGCCTGATTG
ATCACTTGTGTACTCTGACTTCCGTCCTATTTTGTCTCGTGACCTTTATT
CATTGCCTTAGCATTGCAACCGGGGCTCATTTTGGCTCCTTCCCACCTTG
CCAACTACCCACAGGTATTAATAGCGGCAATACGATTGTATCCTGCATGT
TCGGCGTCCTAAACCGCCGATGATGTGCTGCTGCTGAGAGGCCTCTCGAG
AAAGTCGGAGTATCTCGACTTGCTGCGACGAATACTGTTTGTACCCCACA
CGGCAATGTCTCTCTCTCGTCCGAAAATACTGGACCAACACGCGGCACTT
GAGCTTTCGTGTTGTTGGAAGGTCTACGCAGGAGGCGAGCCAAAATACGT
CTCGCTCTCCGCCGTTCCCTCAAACTATCAACAGACACCGGCCAGAGAGT
CGATATTTTGTTTTGTCGGTGCATATGAGGTGTACATACAGCACAGCAGA
ACAGCAGTACGAAGCCCCCGAAAAGATCAGCACTCTCGACCCCGAGCGCG
AGTTGATACCGTATGCTCTAATCAATATAACACACCCCCCGGGACGAATT
GCGGACCCGGTTTCCTCTAAATATGCGGGGGCACACACAACGAGTGGTGG
CTTTGGAAATAATGCGTCGAGAAAGTTGTAGAGATAGACGCATCGCTCTC
GTCGTACTCAGTACGCCCTCCTCGCTGTCGAGAAACTCAGCTTTGAAAAT
CGCTCGAGTGGGTGTGCTATCTTGAGTGTTACACGGCGGTAGATAGTATC
AGGTACCAGGTATATTATAGCTGCGTCCTGTGTACCCTGGGTGTCATAGT
ATATCTGCTGTCTCCTGTACCAGATATCTTAGCTTTGGCGTTAACAATAT
GTAGAAAACGAACACCCATGAGCCCTCCAAGGCTTAGGCACTTCCCTTTG
TGGCTTCCGTCCAACCAAAAACGTGGGCACCGCGGTTCAAGAACTCACAC
GACATGCAAGCGGCTCGCAGCTCGCAGCGCCGCTTCTTTTTTGGCCCACC
TTTGAGGCAAACCGGTCTCCTGTATATAATAGTATACCATACCGTTGGCG
TCGTCACCGCAGCGAACATGCAGCACGCCAGACAGATCGCTCACACAGCC
GCGCTTTCTTTCGGAAGGTTGTCACAGCAGCAGTATCAAAGTCTACTGCC
AGTACTGCCAGTAACAGTACTCGCCAGTAGCAACACTGCAGATCACGCTC
CAGCACTCGTTTTGTGCGTACTCGTCGTACGTGCCCGTCCCTCGGAGTAG
TTTCTGCGAAGAGCACGGAATATGCCCCAGCACCTCACGGTATAGCAGTA
CGCCATGCCCTAAAGTGTTACTGTGCTGGTACTGGTGCTGCCGTACCACC
TTCGTTGCCTTCAGTACATGCTTCTTCGTTTCAGCAGTATAACGAAACCA
CTCGCTAAAAAATGCTCCCCAATGTTTACTACGTTGTGTGTCAGGTACCT
GATACAGCAGTACTGTAGGACTAAGCCTGAACGCCACCCCGCCCTCTCGC
TGTCCCTTTCGTGACGGCGCCTGCCGTATGCTACGTGACGCCTCGTGCTC
GGTGCTTGCTCGATATCTCGGCCCTGGGCTCCCGATGATGATGAATCGCG
TCGGGTGTGGCTCTCTCACTCTCTTTCTCTGTTTTGCGGCGGCGCGATGA
TCAGTACGATCTGTCGGCGACGACTTTCTCTCCCGATGGAAAGATTTTCC
AGGTGAGCGTGCGGTGCGGGCACGGAACGGTATGGTCCGGTTCCGTCAAA
TTCACGGTTCGGAACGGTATGGAAAGGTGCAGAACGGTACGGAATTGTAT
AATACGAAACGAAAGCGGTACGGTACGGAACGCTACGGGAAGGCTCAGAA
CAGCACGGAATGCGCAAAAAAAAACGATTCCGCACCGTCGACACTGCCTC
CCATCCCGTTCGAACTCCCGCTATATTTCCAAATGGCGGTCGGTTTCTCT
GCTCTTCTCACATGCTCTCGTTTACGCTCCGCCTACATGCTGTTCATCGC
TCCGTTGCGTTTTCGGCGTCGGTTTAGGTGGAGTACGCCACCAAAGCGGT
AGAAAATTCTGGCACCGCGATGGGGGTGCGCTGTAAAGACGGAGTGCTGC
TGGCGGTGGAGAAGCTCCTGATCTCGAAGATGCTCGTGTCTGGGTCGAAC
CGGTGAGTCCGGTGCTTTCACCATGTGGTATCTCTTGTGTCGACGTTTTT
GTGACGGACACACAGAGCTTTTTTTCAAAATATCTCTACAAGGATGAAGA
ATCAGCGGTTGTGCTGGATGTGGATGGGGAGAGAGGACGGGTTTAATGTG
AAGAACACACACACGAAGGCAGCAGCGCACGCACCACTGCAACGAAACCA
CAGCAATGAATGCCAACGGGACGTAACTTCAACTTCAACCCCTTCAGGAC
TACCCCAAGCGGTAGCGACCAAAACAATGGTTGGTAGCTTTGGTATTATC
AACATCCTACATACGCGCAGCAGCGTAAGCACCGTGCGCTATGTACGTAC
GGGTAGATCGCATCGTGCACGTGCCGTACGATTCCTTGCATTCAACCATT
GTAACTCGGACACGAGGTTGTGCCGTCCTCCTATTACACAGCAGTGGAAG
TTTTTTTTGTAATGATGCATTGCTATGGTCGATTTTCCCCTCTGATGTCA
GTAGAATACCAGGTATTTTCCGATCAATCGGCGCAACACGAAATCTATCT
CGCCATTTCGCGCTCCTCTTCTGTGATTTTTGCCGTGTCCGCTGTACGTA
GTAGTCGTGTGCAATGTTTTTCGGCGGCATTGCGCAATCATGTACTACTG
CAGGCAATACCTGGTAGCGGCTGTTCGTTGTCCCCGCGTCGAAGCGCTGG
GGGTCTCTCTCACATTGTTTCAGCAGTTTCAAGCTGCAGCAGTGCAGTAT
TTGGTAGTGGTTTACTCTTGTGTACATTTGGACCCTAGACACGCTCAACA
CCTCGCACCGCTTCACCCACGTTTATGTGAGAAGTTTCGACGAAGAGCTT
CTCCGAACATAGAAGTTCACGTCCGTTATGGAGCTCTTTTCATAGTCCCC
GCGTAACCAGCCGCAGCTCGGGTTAGCGTGTCCTTGACTCGCCGTGATAC
CCGCAGCTATGGCAGCGTTTGCGCGATATAAGTCATTGGCCTGTTGGAGT
GTAGCTTGTGTATCAGCGCACACTGCTGGTGTAGGCAGCGATCAACTATT
TAATCACTGGAGAATTGTTCTTTTTAACTATCATGTTTCCTTGGGTAGCT
TTTTGCTGCTTCTACTCTTGAGCTGGACGCGTATGATGCCGCCGGCAGCC
CAACCCGTTGGCTGTTTCCTTGTGCTAGTTTTGTAAGCCCAGCGCCGAAC
CCGGCAGAAACGCCTCTCTACAGTATCAAAAGTGCAAAATATTGTCCAAG
CTATACGACACACAACACGCACAGCACAGCACCAACACAACGCACTCACA
CCCCCCGCTTGCACGCACACACACCAAATGAACGACAGACGCGTTCACGG
GGTTTCCAAGCACGTTGGCATGGCGGTGGCGGGGGTGGGCGCCGACGCAC
GGCAGATCGTGTACCACGGGCGGGACGAGGTGGCGACTTACATCGAGAAC
TACGGGTCTCAGATGCCACCCTCCATGCTGGCGGATCGGCTGGCGCAGTA
CGTGCACTACTTCACGCTCCACGGTTCCCTCCGGCCGTTTGGGGCGTCGG
TTCTTGTCGCCGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9244:7031..11197+

>mRNA_M-pyrifera_M_contig9244.21389.1 ID=mRNA_M-pyrifera_M_contig9244.21389.1|Name=mRNA_M-pyrifera_M_contig9244.21389.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig9244:7031..11197+ (Macrocystis pyrifera P11B4 male)
ATGAGCAGCACTGGAGCAGGGATGAGCAGCACTGGAGCAGGGTACGATCT
GTCGGCGACGACTTTCTCTCCCGATGGAAAGATTTTCCAGTACGATCTGT
CGGCGACGACTTTCTCTCCCGATGGAAAGATTTTCCAGGTGGAGTACGCC
ACCAAAGCGGTAGAAAATTCTGGCACCGCGATGGGGGTGCGCTGTAAAGA
CGGAGTGCTGCTGGCGGTGGAGAAGCTCCTGATCTCGAAGATGCTCGTGT
CTGGGTCGAACCGGTGGAGTACGCCACCAAAGCGGTAGAAAATTCTGGCA
CCGCGATGGGGGTGCGCTGTAAAGACGGAGTGCTGCTGGCGGTGGAGAAG
CTCCTGATCTCGAAGATGCTCGTGTCTGGGTCGAACCGACGCGTTCACGG
GGTTTCCAAGCACGTTGGCATGGCGGTGGCGGGGGTGGGCGCCGACGCAC
GGCAGATCGTGTACCACGGGCGGGACGAGGTGGCGACTTACATCGAGAAC
TACGGGTCTCAGATGCCACCCTCCATGCTGGCGGATCGGCTGGCGCAGTA
CGTGCACTACTTCACGCTCCACGGTTCCCTCCGGCCGTTTGGGGCGTCGG
TTCTTGTCGCCGGGTGAACGCGTTCACGGGGTTTCCAAGCACGTTGGCAT
GGCGGTGGCGGGGGTGGGCGCCGACGCACGGCAGATCGTGTACCACGGGC
GGGACGAGGTGGCGACTTACATCGAGAACTACGGGTCTCAGATGCCACCC
TCCATGCTGGCGGATCGGCTGGCGCAGTACGTGCACTACTTCACGCTCCA
CGGTTCCCTCCGGCCGTTTGGGGCGTCGGTTCTTGTCGCCGGGTGA
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