mRNA_M-pyrifera_M_contig92411.21386.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92411.21386.1
Unique NamemRNA_M-pyrifera_M_contig92411.21386.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: A0A0B6Y7F7_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Y7F7_9EUPU)

HSP 1 Score: 103 bits (256), Expect = 3.480e-26
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIITGELDEEPSS 210
            ++GATAIED+LQ+GVP+TIA+LA AGIK WVLTGDK ETAINIG +CRLLTDE+ EP II  E +EE  S
Sbjct:   40 LIGATAIEDKLQDGVPETIANLALAGIKIWVLTGDKQETAINIGYSCRLLTDEMEEPFIIDAETEEEVES 109
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: A0A5A8ECU9_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECU9_CAFRO)

HSP 1 Score: 107 bits (267), Expect = 1.570e-25
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIIT 183
            +VGATAIED+LQ+GVP TI+DLARAGIKTWVLTGDKVETAINIGRTC+LLTD +GEP+ +T
Sbjct:  918 LVGATAIEDKLQDGVPQTISDLARAGIKTWVLTGDKVETAINIGRTCKLLTDAMGEPMRVT 978
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: UPI00065B924A (phospholipid-transporting ATPase ID n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B924A)

HSP 1 Score: 103 bits (256), Expect = 4.810e-24
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIITGELDEEPSS 210
            ++GATAIED+LQ+GVP+TIA+LA AGIK WVLTGDK ETAINIG +CRLLTDE+ EP II GE  EE  S
Sbjct:  658 LIGATAIEDKLQDGVPETIANLALAGIKIWVLTGDKQETAINIGYSCRLLTDEMEEPFIIDGESMEEVES 727
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: A0A2C9JYJ6_BIOGL (Phospholipid-transporting ATPase n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JYJ6_BIOGL)

HSP 1 Score: 101 bits (251), Expect = 2.280e-23
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIITGELDEE 201
            ++GATAIED+LQ+GVP+TIA+LA AGIK WVLTGDK ETAINIG +CRLLTDE+ EP II GE  EE
Sbjct:  583 LLGATAIEDKLQDGVPETIANLALAGIKIWVLTGDKQETAINIGYSCRLLTDEMEEPFIIDGESLEE 649
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: A0A3S1I231_ELYCH (Phospholipid-transporting ATPase n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1I231_ELYCH)

HSP 1 Score: 100 bits (249), Expect = 4.250e-23
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIITGELDEE 201
            ++GATAIED+LQ+GVP+TIA+LA AGIK WVLTGDK ETAINIG +CRLLTDE+ EP II  +  EE
Sbjct:  648 LIGATAIEDKLQDGVPETIANLALAGIKIWVLTGDKQETAINIGYSCRLLTDEMEEPFIIDADTQEE 714
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: V4A3N6_LOTGI (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A3N6_LOTGI)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-22
Identity = 46/67 (68.66%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIITGELDEE 201
            ++GATAIED+LQ+GVP+TIA+LA+AGIK WVLTGDK ETAINIG +C+LLT+E+ EP II+ +  EE
Sbjct:  641 LIGATAIEDKLQDGVPETIANLAQAGIKIWVLTGDKQETAINIGYSCKLLTEEMEEPFIISSDSSEE 707
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: A0A8B7NU99_HYAAZ (Phospholipid-transporting ATPase n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NU99_HYAAZ)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-22
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIITGELDEE 201
            ++GA+AIED+LQEGVP+ IA+L+ AGIK WVLTGDK ETAINIG +C LLTDE+ EPII+ GE +E+
Sbjct:  681 LIGASAIEDKLQEGVPEAIANLSLAGIKIWVLTGDKQETAINIGYSCHLLTDEMHEPIIVDGETEED 747
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: A0A6A7FZH1_9CRUS (Phospholipid-transporting ATPase (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FZH1_9CRUS)

HSP 1 Score: 99.0 bits (245), Expect = 1.470e-22
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIITGELDE 198
            ++GA+AIED+LQ+GVP+TIA+LA AGIK WVLTGDK ETAINIG +C+LLTDE+G+P II GE  E
Sbjct:  641 LLGASAIEDKLQDGVPETIANLAVAGIKIWVLTGDKQETAINIGYSCQLLTDEMGDPFIIDGENSE 706
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: A0A2A2LSG3_9BILA (Phospholipid-transporting ATPase n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2LSG3_9BILA)

HSP 1 Score: 98.2 bits (243), Expect = 2.610e-22
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIITGELDEE 201
            ++GATAIED+LQEGVPDTIA LA A IK WVLTGDK ETAINI  +CRLLTDE+ E ++I G+ +EE
Sbjct:  100 LLGATAIEDKLQEGVPDTIAHLAEANIKIWVLTGDKTETAINIAYSCRLLTDEMKEIVVIDGKTEEE 166
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BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Match: A0A2A2LI14_9BILA (Phospholipid-transporting ATPase n=3 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2LI14_9BILA)

HSP 1 Score: 98.2 bits (243), Expect = 2.760e-22
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLLTDELGEPIIITGELDEE 201
            ++GATAIED+LQEGVPDTIA LA A IK WVLTGDK ETAINI  +CRLLTDE+ E ++I G+ +EE
Sbjct:  793 LLGATAIEDKLQEGVPDTIAHLAEANIKIWVLTGDKTETAINIAYSCRLLTDEMKEIVVIDGKTEEE 859
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92411.21386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B6Y7F7_9EUPU3.480e-2671.43Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A5A8ECU9_CAFRO1.570e-2581.97Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
UPI00065B924A4.810e-2472.86phospholipid-transporting ATPase ID n=1 Tax=Aplysi... [more]
A0A2C9JYJ6_BIOGL2.280e-2374.63Phospholipid-transporting ATPase n=1 Tax=Biomphala... [more]
A0A3S1I231_ELYCH4.250e-2371.64Phospholipid-transporting ATPase n=1 Tax=Elysia ch... [more]
V4A3N6_LOTGI1.080e-2268.66Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A8B7NU99_HYAAZ1.080e-2268.66Phospholipid-transporting ATPase n=2 Tax=Hyalella ... [more]
A0A6A7FZH1_9CRUS1.470e-2271.21Phospholipid-transporting ATPase (Fragment) n=2 Ta... [more]
A0A2A2LSG3_9BILA2.610e-2270.15Phospholipid-transporting ATPase n=1 Tax=Diploscap... [more]
A0A2A2LI14_9BILA2.760e-2270.15Phospholipid-transporting ATPase n=3 Tax=Diploscap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92411contigM-pyrifera_M_contig92411:3..212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score103.6
Seed ortholog evalue3.8e-20
Seed eggNOG ortholog6500.XP_005107403.1
Preferred nameATP8B2
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryother localisation
GOsGO:0001669,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003008,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005488,GO:0005543,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0005887,GO:0005903,GO:0005929,GO:0006082,GO:0006355,GO:0006629,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006869,GO:0006887,GO:0006955,GO:0006996,GO:0007030,GO:0007275,GO:0007399,GO:0007423,GO:0007600,GO:0007605,GO:0007606,GO:0007608,GO:0008150,GO:0008152,GO:0008202,GO:0008206,GO:0008289,GO:0008509,GO:0008514,GO:0009593,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010876,GO:0012505,GO:0012506,GO:0015075,GO:0015247,GO:0015605,GO:0015711,GO:0015718,GO:0015721,GO:0015748,GO:0015849,GO:0015850,GO:0015893,GO:0015914,GO:0015917,GO:0016020,GO:0016021,GO:0016043,GO:0016125,GO:0016192,GO:0016324,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019752,GO:0021545,GO:0021562,GO:0021602,GO:0021603,GO:0021648,GO:0021650,GO:0021675,GO:0022008,GO:0022857,GO:0030141,GO:0030154,GO:0030182,GO:0030425,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031226,GO:0031253,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031344,GO:0031410,GO:0031526,GO:0031982,GO:0032420,GO:0032421,GO:0032501,GO:0032502,GO:0032530,GO:0032534,GO:0032787,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0034204,GO:0034220,GO:0035579,GO:0036230,GO:0036477,GO:0042119,GO:0042221,GO:0042490,GO:0042493,GO:0042581,GO:0042623,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043436,GO:0043492,GO:0043583,GO:0044087,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045177,GO:0045321,GO:0045332,GO:0045892,GO:0045934,GO:0046903,GO:0046942,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050906,GO:0050907,GO:0050911,GO:0050954,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051606,GO:0055085,GO:0060113,GO:0060119,GO:0060255,GO:0060491,GO:0061024,GO:0065007,GO:0065008,GO:0070820,GO:0070821,GO:0071683,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097035,GO:0097223,GO:0097447,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098656,GO:0098805,GO:0098858,GO:0098862,GO:0099503,GO:0120025,GO:0120032,GO:0120035,GO:0120038,GO:1901360,GO:1901611,GO:1901612,GO:1901615,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily
EggNOG OGs38BZ2@33154,3B9JE@33208,3CUGV@33213,COG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.4187646-CDS-M-pyrifera_M_contig92411:2..2121622816837.4187646-CDS-M-pyrifera_M_contig92411:2..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92411 3..212 +
1692278207.7883832-CDS-M-pyrifera_M_contig92411:2..2121692278207.7883832-CDS-M-pyrifera_M_contig92411:2..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92411 3..212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92411.21386.1prot_M-pyrifera_M_contig92411.21386.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92411 3..212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92411.21386.1

>prot_M-pyrifera_M_contig92411.21386.1 ID=prot_M-pyrifera_M_contig92411.21386.1|Name=mRNA_M-pyrifera_M_contig92411.21386.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
IVGATAIEDRLQEGVPDTIADLARAGIKTWVLTGDKVETAINIGRTCRLL
TDELGEPIIITGELDEEPSS
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mRNA from alignment at M-pyrifera_M_contig92411:3..212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92411.21386.1 ID=mRNA_M-pyrifera_M_contig92411.21386.1|Name=mRNA_M-pyrifera_M_contig92411.21386.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig92411:3..212+ (Macrocystis pyrifera P11B4 male)
ATCGTTGGCGCCACTGCCATCGAAGATCGACTCCAAGAAGGCGTTCCAGA
CACAATTGCAGACTTGGCTCGAGCAGGAATCAAAACGTGGGTCTTGACTG
GTGATAAGGTTGAAACAGCAATCAACATTGGACGCACATGCCGTCTTCTC
ACCGATGAGCTTGGAGAACCCATCATTATCACAGGAGAATTGGATGAAGA
ACCATCGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92411:3..212+

>mRNA_M-pyrifera_M_contig92411.21386.1 ID=mRNA_M-pyrifera_M_contig92411.21386.1|Name=mRNA_M-pyrifera_M_contig92411.21386.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig92411:3..212+ (Macrocystis pyrifera P11B4 male)
ATCGTTGGCGCCACTGCCATCGAAGATCGACTCCAAGAAGGCGTTCCAGA
CACAATTGCAGACTTGGCTCGAGCAGGAATCAAAACGTGGGTCTTGACTG
GTGATAAGGTTGAAACAGCAATCAACATTGGACGCACATGCCGTCTTCTC
ACCGATGAGCTTGGAGAACCCATCATTATCACAGGAGAATTGGATGAAGA
ACCATCGTCCATCGTTGGCGCCACTGCCATCGAAGATCGACTCCAAGAAG
GCGTTCCAGACACAATTGCAGACTTGGCTCGAGCAGGAATCAAAACGTGG
GTCTTGACTGGTGATAAGGTTGAAACAGCAATCAACATTGGACGCACATG
CCGTCTTCTCACCGATGAGCTTGGAGAACCCATCATTATCACAGGAGAAT
TGGATGAAGAACCATCGTCC
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