mRNA_M-pyrifera_M_contig92407.21385.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92407.21385.1
Unique NamemRNA_M-pyrifera_M_contig92407.21385.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: A0A7W1BKW8_9BACT (DinB family protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7W1BKW8_9BACT)

HSP 1 Score: 160 bits (406), Expect = 1.100e-47
Identity = 79/133 (59.40%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 LEAATQGLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERV 399
            +E+A  GL++  LR PE PGKWSVI++VQHLADTE+   +R R ILA  SP I+ Y+QD WAS L YN   L +AL Q RVLR ANLRL + LG +Q ++YGIHSERGRESI  ++RL AAHDL H  QI R+
Sbjct:   42 VESAVTGLSDSLLRMPEAPGKWSVIEVVQHLADTELVYGYRMRMILAHPSPAIEGYDQDAWASELRYNDTPLTEALEQMRVLRRANLRLLQGLGEEQFDRYGIHSERGRESIRHIVRLIAAHDLVHRRQIARI 174          
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: A0A6A0HY53_9BACT (DinB_2 domain-containing protein n=2 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A6A0HY53_9BACT)

HSP 1 Score: 155 bits (391), Expect = 2.080e-45
Identity = 76/137 (55.47%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 LEAATQGLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERVKEAI 411
            LEA   GL +  LR PE+PGKWS++Q++QHLAD+E+    R R ILA D+PDIQ Y+QD WA+ L+Y+   L D L Q RVLR  NL+L RSL   Q+N+ GIHSERG ES+    +L A HDL HL QI R+K+AI
Sbjct:   41 LEAEIAGLADTALRQPEKPGKWSMLQVLQHLADSELVTGVRLRMILAHDTPDIQGYDQDAWATKLNYSECSLTDTLEQLRVLRRVNLKLLRSLNESQMNRVGIHSERGPESVRRTSQLVAGHDLLHLNQIRRIKKAI 177          
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: UPI0019A7D85F (DinB family protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI0019A7D85F)

HSP 1 Score: 154 bits (388), Expect = 5.930e-45
Identity = 75/133 (56.39%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    1 LEAATQGLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERV 399
            +E+A  G++   LRT E PGKWSV+++VQHLADTE+   +R R ILA  SP I+ Y+QD WA  L YN + L  AL Q RVLR ANLRL + L   QL++YG+HSERGRESI  ++RL AAHDL H  QI R+
Sbjct:   42 VESAVAGISETSLRTAEAPGKWSVMEVVQHLADTELVYGYRMRMILAHPSPAIEGYDQDAWAGELRYNEVPLAQALEQMRVLRGANLRLLQGLSEQQLDRYGMHSERGRESIRQIMRLIAAHDLVHRRQIARI 174          
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: A0A7C2U498_9BACT (DUF664 domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C2U498_9BACT)

HSP 1 Score: 153 bits (386), Expect = 9.360e-45
Identity = 70/136 (51.47%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 LEAATQGLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERVKEA 408
            L+A   G+++  LR PE+PGKWS++Q++QHLADTE+   +R R ILA+ +P+IQ Y+QD WA+ L+YN M L +AL   RVLR ANL++ R L   QL + G+H+ERG ESI  ++++ AAHD+ HL QI R+K+A
Sbjct:   33 LQAEIAGIDDATLRRPEKPGKWSILQVIQHLADTEVVYRYRMRMILAQPTPEIQGYDQDLWATNLNYNDMDLSEALEIIRVLRAANLKMLRGLNETQLERSGMHNERGPESIRKILQMIAAHDILHLNQIRRIKKA 168          
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: A0A3N5G0H0_9BACT (DUF664 domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A3N5G0H0_9BACT)

HSP 1 Score: 152 bits (384), Expect = 3.430e-44
Identity = 73/141 (51.77%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    1 LEAATQGLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERVKEAIQSPI 423
            L  A  GL  E   TPERPGKWSV Q+VQHLAD+E+   FR R ++A D+P++  Y+QD WA  L Y    L  AL +F +LRNANLRL+R   P+ L +   H+ERG ES+  +IRLYA HDL HL QI R+++AI +P+
Sbjct:   47 LRQAVAGLTPEQEATPERPGKWSVRQVVQHLADSELVGGFRFRMVIAHDAPELPGYDQDLWAERLRYQESDLATALDEFTMLRNANLRLFRRATPEDLRRVMRHAERGEESLGHLIRLYAGHDLVHLAQIRRIRQAIGAPV 187          
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: A0A7Y5NC82_9BACT (DinB family protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5NC82_9BACT)

HSP 1 Score: 149 bits (377), Expect = 3.020e-43
Identity = 69/131 (52.67%), Postives = 95/131 (72.52%), Query Frame = 1
Query:   19 GLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERVKEAI 411
            GL    LR PE+PGKWS++Q+VQHLAD+E+   +R R ILA  +P IQ Y+QD WA+ L YN + L DAL Q RVLR+ NL+L RSL  +QL + G+HSERG ES+  ++++ A HDL H  QI+R+K+++
Sbjct:   49 GLEEAALRHPEKPGKWSIMQVVQHLADSELVAGYRMRMILAHPNPPIQGYDQDAWANELRYNDVSLRDALEQLRVLRSLNLKLVRSLSKEQLAREGLHSERGPESVWKIVQMMAGHDLLHRNQIQRIKQSL 179          
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: A0A7W1SNM3_9BACT (DinB family protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7W1SNM3_9BACT)

HSP 1 Score: 144 bits (364), Expect = 2.500e-41
Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = 1
Query:   16 QGLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERVKEA 408
            Q L    LR PE PGKWS +++VQHLAD+++   FRSR IL+ED P +Q Y+QD+WAS   Y       ALAQ +VLR+ANL + R LGP +L++ G+HSERG ES+  +++L AAHDL H  QIERV  A
Sbjct:   43 QRLRGAALRRPEAPGKWSAVEVVQHLADSDLVFGFRSRMILSEDRPPLQGYDQDRWASLFRYRDASPAGALAQLQVLRDANLGILRPLGPAELDRVGMHSERGPESLGHLVKLMAAHDLVHRRQIERVLAA 173          
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: A0A7Y5G1Y7_9BACT (DinB family protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5G1Y7_9BACT)

HSP 1 Score: 141 bits (356), Expect = 7.500e-41
Identity = 66/120 (55.00%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   52 RPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERVKEAI 411
            +PGKWS++Q++QHLAD+E+  + R R ILA D+PDIQ Y+QD WA+ L+Y+   L D L Q RVLR  NL+L  SL   Q+N+ GIHSERG ES+  + +L A HDL HL QI R+K+AI
Sbjct:    1 KPGKWSILQVLQHLADSELVTSMRLRMILAHDTPDIQGYDQDAWATKLNYSECSLTDTLEQLRVLRRVNLKLLHSLNESQMNRVGIHSERGPESVRKISQLVAGHDLLHLNQIRRIKKAI 120          
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: A0A7V9U3F9_9BACT (DinB family protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7V9U3F9_9BACT)

HSP 1 Score: 142 bits (357), Expect = 3.230e-40
Identity = 72/137 (52.55%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    1 LEAATQGLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERVKEAI 411
            LE  T GL    LR PE+P KWSV ++VQHLAD+E+   +R R ILA D+P+I +Y+QD WA  L Y+   L DAL Q RVLR   L L   L PD+  + G+HSERGRES+  +  L AAHDL HL QI R+K  I
Sbjct:   43 LERETAGLALAQLRQPEKPRKWSVNEVVQHLADSELVTGYRIRLILASDAPEILAYDQDAWAHALRYSEASLPDALTQIRVLRGRTLELLLGLQPDEWERAGMHSERGRESVRQIATLQAAHDLVHLRQIARIKSVI 179          
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Match: A0A1F2VP53_9BACT (DinB_2 domain-containing protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b TaxID=1797193 RepID=A0A1F2VP53_9BACT)

HSP 1 Score: 141 bits (355), Expect = 3.280e-40
Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 LEAATQGLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDSPDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQYGIHSERGRESIIDMIRLYAAHDLYHLGQIERVKEA 408
            L  A  GL+ + +R PE PGKWS+ Q++QHLAD+++  A+R R ILA+D P +  Y+QD WA  LHY      +ALA F VLR  NL L     PD L + G+H+ERG ES+  + RLYA HDL H+ QI+R++ A
Sbjct:   21 LARAIDGLSVDRMRLPEAPGKWSIAQVLQHLADSDVVWAWRMRLILAQDRPQLTGYDQDLWAERLHYAEADPAEALATFDVLRKGNLTLLERATPDDLKRVGVHAERGEESVERLCRLYAGHDLMHMRQIDRIRAA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92407.21385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W1BKW8_9BACT1.100e-4759.40DinB family protein n=1 Tax=Gemmatimonadaceae bact... [more]
A0A6A0HY53_9BACT2.080e-4555.47DinB_2 domain-containing protein n=2 Tax=candidate... [more]
UPI0019A7D85F5.930e-4556.39DinB family protein n=1 Tax=Anaerolineae bacterium... [more]
A0A7C2U498_9BACT9.360e-4551.47DUF664 domain-containing protein n=1 Tax=bacterium... [more]
A0A3N5G0H0_9BACT3.430e-4451.77DUF664 domain-containing protein n=1 Tax=bacterium... [more]
A0A7Y5NC82_9BACT3.020e-4352.67DinB family protein n=1 Tax=candidate division KSB... [more]
A0A7W1SNM3_9BACT2.500e-4153.44DinB family protein n=1 Tax=Gemmatimonadales bacte... [more]
A0A7Y5G1Y7_9BACT7.500e-4155.00DinB family protein n=1 Tax=candidate division KSB... [more]
A0A7V9U3F9_9BACT3.230e-4052.55DinB family protein n=1 Tax=Gemmatimonadaceae bact... [more]
A0A1F2VP53_9BACT3.280e-4048.53DinB_2 domain-containing protein n=1 Tax=Acidobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92407contigM-pyrifera_M_contig92407:6..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score106.7
Seed ortholog evalue9.2e-21
Seed eggNOG ortholog204669.Acid345_2164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DinB superfamily
EggNOG OGs2JJGU@204432,3Y501@57723,COG2318@1,COG2318@2
COG Functional cat.S
Best tax levelAcidobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.384951-CDS-M-pyrifera_M_contig92407:5..4341622816837.384951-CDS-M-pyrifera_M_contig92407:5..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92407 6..434 +
1692278207.7761936-CDS-M-pyrifera_M_contig92407:5..4341692278207.7761936-CDS-M-pyrifera_M_contig92407:5..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92407 6..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92407.21385.1prot_M-pyrifera_M_contig92407.21385.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92407 6..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92407.21385.1

>prot_M-pyrifera_M_contig92407.21385.1 ID=prot_M-pyrifera_M_contig92407.21385.1|Name=mRNA_M-pyrifera_M_contig92407.21385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
LEAATQGLNNEHLRTPERPGKWSVIQIVQHLADTEIALAFRSRRILAEDS
PDIQSYEQDQWASTLHYNGMRLGDALAQFRVLRNANLRLYRSLGPDQLNQ
YGIHSERGRESIIDMIRLYAAHDLYHLGQIERVKEAIQSPIV*
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mRNA from alignment at M-pyrifera_M_contig92407:6..434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92407.21385.1 ID=mRNA_M-pyrifera_M_contig92407.21385.1|Name=mRNA_M-pyrifera_M_contig92407.21385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig92407:6..434+ (Macrocystis pyrifera P11B4 male)
CTCGAGGCGGCTACGCAGGGCCTCAATAATGAACACTTGCGGACCCCTGA AAGACCGGGGAAGTGGTCGGTCATCCAAATCGTTCAGCATCTCGCCGACA CCGAAATTGCACTGGCTTTTCGATCGCGCAGAATTTTGGCCGAGGATTCG CCGGATATCCAGAGTTATGAGCAGGACCAATGGGCCAGCACGCTGCATTA CAATGGCATGCGCTTGGGCGACGCACTCGCTCAGTTTCGCGTCCTGCGAA ACGCCAACTTGCGTCTATACCGATCGCTGGGTCCTGACCAACTCAACCAG TACGGCATCCATTCTGAACGAGGCCGCGAATCTATCATCGACATGATCCG CCTCTACGCCGCCCACGACCTCTACCACCTCGGCCAAATTGAACGCGTAA AAGAAGCCATCCAATCGCCCATCGTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92407:6..434+

>mRNA_M-pyrifera_M_contig92407.21385.1 ID=mRNA_M-pyrifera_M_contig92407.21385.1|Name=mRNA_M-pyrifera_M_contig92407.21385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig92407:6..434+ (Macrocystis pyrifera P11B4 male)
CTCGAGGCGGCTACGCAGGGCCTCAATAATGAACACTTGCGGACCCCTGA
AAGACCGGGGAAGTGGTCGGTCATCCAAATCGTTCAGCATCTCGCCGACA
CCGAAATTGCACTGGCTTTTCGATCGCGCAGAATTTTGGCCGAGGATTCG
CCGGATATCCAGAGTTATGAGCAGGACCAATGGGCCAGCACGCTGCATTA
CAATGGCATGCGCTTGGGCGACGCACTCGCTCAGTTTCGCGTCCTGCGAA
ACGCCAACTTGCGTCTATACCGATCGCTGGGTCCTGACCAACTCAACCAG
TACGGCATCCATTCTGAACGAGGCCGCGAATCTATCATCGACATGATCCG
CCTCTACGCCGCCCACGACCTCTACCACCTCGGCCAAATTGAACGCGTAA
AAGAAGCCATCCAATCGCCCATCGTATGACTCGAGGCGGCTACGCAGGGC
CTCAATAATGAACACTTGCGGACCCCTGAAAGACCGGGGAAGTGGTCGGT
CATCCAAATCGTTCAGCATCTCGCCGACACCGAAATTGCACTGGCTTTTC
GATCGCGCAGAATTTTGGCCGAGGATTCGCCGGATATCCAGAGTTATGAG
CAGGACCAATGGGCCAGCACGCTGCATTACAATGGCATGCGCTTGGGCGA
CGCACTCGCTCAGTTTCGCGTCCTGCGAAACGCCAACTTGCGTCTATACC
GATCGCTGGGTCCTGACCAACTCAACCAGTACGGCATCCATTCTGAACGA
GGCCGCGAATCTATCATCGACATGATCCGCCTCTACGCCGCCCACGACCT
CTACCACCTCGGCCAAATTGAACGCGTAAAAGAAGCCATCCAATCGCCCA
TCGTATGA
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