mRNA_M-pyrifera_M_contig92386.21380.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92386.21380.1
Unique NamemRNA_M-pyrifera_M_contig92386.21380.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig92386.21380.1 vs. uniprot
Match: A0A183DR93_9BILA (ANK_REP_REGION domain-containing protein n=2 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183DR93_9BILA)

HSP 1 Score: 49.3 bits (116), Expect = 3.080e-5
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 AAADNNVELVKTLLAQNPSLRNYKDNHDWQALHFASNTGAIGPVYVLLNWGADPNSSTD 177
            AA + N++L+K L+A+NPSL   +D   + ALH A+  G +  V  LL+ GADP  +TD
Sbjct:  102 AAENGNLQLLKELMAKNPSLLTARDMDGYTALHRAAYGGHVEAVEYLLSLGADPEWTTD 160
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92386.21380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A183DR93_9BILA3.080e-544.07ANK_REP_REGION domain-containing protein n=2 Tax=G... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92386contigM-pyrifera_M_contig92386:562..765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.9651153-CDS-M-pyrifera_M_contig92386:561..7651622816836.9651153-CDS-M-pyrifera_M_contig92386:561..765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92386 562..765 -
1692278207.4856763-CDS-M-pyrifera_M_contig92386:561..7651692278207.4856763-CDS-M-pyrifera_M_contig92386:561..765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92386 562..765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92386.21380.1prot_M-pyrifera_M_contig92386.21380.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92386 562..765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92386.21380.1

>prot_M-pyrifera_M_contig92386.21380.1 ID=prot_M-pyrifera_M_contig92386.21380.1|Name=mRNA_M-pyrifera_M_contig92386.21380.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
AAADNNVELVKTLLAQNPSLRNYKDNHDWQALHFASNTGAIGPVYVLLNW
GADPNSSTDSLRTSLHLA
back to top

mRNA from alignment at M-pyrifera_M_contig92386:562..765-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92386.21380.1 ID=mRNA_M-pyrifera_M_contig92386.21380.1|Name=mRNA_M-pyrifera_M_contig92386.21380.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig92386:562..765- (Macrocystis pyrifera P11B4 male)
GCAGCGGCGGACAACAATGTGGAACTCGTCAAGACTCTTCTCGCGCAGAA
CCCTTCCCTGAGAAACTACAAGGACAACCACGACTGGCAAGCTCTCCACT
TTGCCTCCAACACAGGAGCGATCGGCCCTGTGTACGTGCTGCTGAACTGG
GGAGCCGATCCCAACTCAAGTACCGACTCCCTGCGAACCTCGTTGCACTT
GGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig92386:562..765-

>mRNA_M-pyrifera_M_contig92386.21380.1 ID=mRNA_M-pyrifera_M_contig92386.21380.1|Name=mRNA_M-pyrifera_M_contig92386.21380.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig92386:562..765- (Macrocystis pyrifera P11B4 male)
GCAGCGGCGGACAACAATGTGGAACTCGTCAAGACTCTTCTCGCGCAGAA
CCCTTCCCTGAGAAACTACAAGGACAACCACGACTGGCAAGCTCTCCACT
TTGCCTCCAACACAGGAGCGATCGGCCCTGTGTACGTGCTGCTGAACTGG
GGAGCCGATCCCAACTCAAGTACCGACTCCCTGCGAACCTCGTTGCACTT
GGCCGCAGCGGCGGACAACAATGTGGAACTCGTCAAGACTCTTCTCGCGC
AGAACCCTTCCCTGAGAAACTACAAGGACAACCACGACTGGCAAGCTCTC
CACTTTGCCTCCAACACAGGAGCGATCGGCCCTGTGTACGTGCTGCTGAA
CTGGGGAGCCGATCCCAACTCAAGTACCGACTCCCTGCGAACCTCGTTGC
ACTTGGCC
back to top