mRNA_M-pyrifera_M_contig92377.21378.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92377.21378.1
Unique NamemRNA_M-pyrifera_M_contig92377.21378.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: A0A7S4HYJ9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HYJ9_9EUKA)

HSP 1 Score: 119 bits (297), Expect = 4.030e-30
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 LFRGNMHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRTLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            LFRG  HQDAHEFLN+LLN+I E ++++ K + EG++ K            K P   G TFVH  FEG+LTNETRCLCCE ITSRDE FLDLS+D+E+N+S+TH
Sbjct:  104 LFRGLQHQDAHEFLNYLLNDIAETIESKRKTK-EGEEVK------------KDPHKNGNTFVHQYFEGLLTNETRCLCCENITSRDESFLDLSIDIEQNASVTH 194          
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: UPI001CB832C6 (ubiquitin carboxyl-terminal hydrolase 46 isoform X3 n=2 Tax=Chiloscyllium plagiosum TaxID=36176 RepID=UPI001CB832C6)

HSP 1 Score: 112 bits (280), Expect = 1.030e-27
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 LFRGNMHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRTLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            LF   M QDAHEFLN+LLN I ++LQ E K+E +  K K    N  E   K  P     T+VHD+F+G LTNETRCL CET++S+DE FLDLSVDVE+N+S+TH
Sbjct:  130 LFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNANEIEENSKPEP-----TWVHDIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITH 228          
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: A0A2K5JZC2_COLAP (Ubiquitin specific peptidase 46 n=5 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K5JZC2_COLAP)

HSP 1 Score: 108 bits (271), Expect = 1.330e-27
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 LFRGNMHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRTLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            LF   M QDAHEFLN+LLN I ++LQ E K+E +  K K    N +E A    P     T+VH++F+G LTNETRCL CET++S+DE FLDLSVDVE+N+S+TH
Sbjct:  105 LFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNG--NMNEPAENNKPEL---TWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITH 203          
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: A0A444V6Y6_ACIRT (Ubiquitin carboxyl-terminal hydrolase 46 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444V6Y6_ACIRT)

HSP 1 Score: 106 bits (265), Expect = 3.300e-27
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 1
Query:   16 MHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRTLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            M QDAHEFLN+LLN + ++LQ E  +E +  K    L+N S ++  +    +  T+VHD+F+G LTNETRCL CET++S+DE FLDLSVDVE+N+S+TH
Sbjct:    1 MQQDAHEFLNYLLNTVADILQEETTQEKQNGK----LKNGSTTSDAEESNKIEPTWVHDIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITH 95          
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: A0A401PIV4_SCYTO (USP domain-containing protein n=5 Tax=Gnathostomata TaxID=7776 RepID=A0A401PIV4_SCYTO)

HSP 1 Score: 110 bits (275), Expect = 6.760e-27
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 LFRGNMHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRTLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            LF   M QDAHEFLN+LLN I ++LQ E K+E +  K K    N  E   K  P     T+VH++F+G LTNETRCL CET++S+DE FLDLSVDVE+N+S+TH
Sbjct:  101 LFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNANEVEENSKPDP-----TWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITH 199          
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: UPI0007AC92A0 (ubiquitin carboxyl-terminal hydrolase 46-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AC92A0)

HSP 1 Score: 108 bits (269), Expect = 6.760e-27
Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 LFRGNMHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRT--LGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            LF   M QDAHEFLN+LLN + ++LQ E K+E   K+  R+  N +  A    P    +  T+VHD+F+G LTNETRCL CET++S+DE FLDLSVDVE+N+S+TH
Sbjct:  112 LFDNYMQQDAHEFLNYLLNTVADILQEEKKQE---KQNGRLKNNGTAIATDTEPEQNKVEPTWVHDIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITH 214          
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: UPI00165997EC (ubiquitin carboxyl-terminal hydrolase 12 isoform X4 n=1 Tax=Halichoerus grypus TaxID=9711 RepID=UPI00165997EC)

HSP 1 Score: 108 bits (271), Expect = 7.390e-27
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 LFRGNMHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRTLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            LF   M QDAHEFLN+LLN I ++LQ E K+E    K    L N +  +      T   T+VH++F+G LTNETRCL CETI+S+DE FLDLSVDVE+N+S+TH
Sbjct:   27 LFDNYMQQDAHEFLNYLLNTIADILQEERKQE----KQNGRLPNGNIDSENNNNSTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITH 126          
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: UPI001A9CD76D (ubiquitin carboxyl-terminal hydrolase 46 isoform X2 n=1 Tax=Ictidomys tridecemlineatus TaxID=43179 RepID=UPI001A9CD76D)

HSP 1 Score: 108 bits (271), Expect = 9.490e-27
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 LFRGNMHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRTLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            LF   M QDAHEFLN+LLN I ++LQ E K+E +  K K    N +E A    P     T+VH++F+G LTNETRCL CET++S+DE FLDLSVDVE+N+S+TH
Sbjct:  112 LFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNG--NMNEPAENNKPEL---TWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITH 210          
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: UPI001403C5CD (ubiquitin carboxyl-terminal hydrolase 46 isoform X3 n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001403C5CD)

HSP 1 Score: 110 bits (274), Expect = 1.030e-26
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 LFRGNMHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRTLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            LF   M QDAHEFLN+LLN I ++LQ E K+E +  K K    N  E   K  P     T+VH++F+G LTNETRCL CET++S+DE FLDLSVDVE+N+S+TH
Sbjct:  112 LFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNANEIEENNKPDP-----TWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITH 210          
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Match: UPI0003D0BEAA (ubiquitin carboxyl-terminal hydrolase 46 isoform X4 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=UPI0003D0BEAA)

HSP 1 Score: 108 bits (271), Expect = 1.060e-26
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 LFRGNMHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPRTLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH 312
            LF   M QDAHEFLN+LLN I ++LQ E K+E +  K K    N +E A    P     T+VH++F+G LTNETRCL CET++S+DE FLDLSVDVE+N+S+TH
Sbjct:  152 LFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNG--NMNEPAENSKPEL---TWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITH 250          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92377.21378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HYJ9_9EUKA4.030e-3057.69Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI001CB832C61.030e-2756.73ubiquitin carboxyl-terminal hydrolase 46 isoform X... [more]
A0A2K5JZC2_COLAP1.330e-2755.77Ubiquitin specific peptidase 46 n=5 Tax=Boreoeuthe... [more]
A0A444V6Y6_ACIRT3.300e-2753.54Ubiquitin carboxyl-terminal hydrolase 46 n=1 Tax=A... [more]
A0A401PIV4_SCYTO6.760e-2755.77USP domain-containing protein n=5 Tax=Gnathostomat... [more]
UPI0007AC92A06.760e-2753.77ubiquitin carboxyl-terminal hydrolase 46-like n=1 ... [more]
UPI00165997EC7.390e-2754.81ubiquitin carboxyl-terminal hydrolase 12 isoform X... [more]
UPI001A9CD76D9.490e-2755.77ubiquitin carboxyl-terminal hydrolase 46 isoform X... [more]
UPI001403C5CD1.030e-2655.77ubiquitin carboxyl-terminal hydrolase 46 isoform X... [more]
UPI0003D0BEAA1.060e-2655.77ubiquitin carboxyl-terminal hydrolase 46 isoform X... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92377contigM-pyrifera_M_contig92377:211..765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score112.8
Seed ortholog evalue8.9e-23
Seed eggNOG ortholog69293.ENSGACP00000018775
Preferred nameusp46
KEGG koko:K11842
Hectar predicted targeting categoryother localisation
GOsGO:0000578,GO:0003002,GO:0003674,GO:0003824,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009790,GO:0009798,GO:0009880,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010469,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0012505,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019941,GO:0022898,GO:0023051,GO:0023057,GO:0030163,GO:0031410,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043269,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0045746,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0051049,GO:0051603,GO:0060255,GO:0065007,GO:0065009,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0071947,GO:0090325,GO:0090326,GO:0097458,GO:0097708,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1904062,GO:2000311,GO:2001257
EggNOG free text desc.Ubiquitin specific peptidase 46
EggNOG OGs38BB6@33154,3BEQW@33208,3CRNZ@33213,486H7@7711,4908G@7742,49XWG@7898,KOG1864@1,KOG1864@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size312
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92377.21378.1prot_M-pyrifera_M_contig92377.21378.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92377 226..765 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.807415-UTR-M-pyrifera_M_contig92377:210..2251622816836.807415-UTR-M-pyrifera_M_contig92377:210..225Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92377 211..225 +
1692278207.3688438-UTR-M-pyrifera_M_contig92377:210..2251692278207.3688438-UTR-M-pyrifera_M_contig92377:210..225Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92377 211..225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.8205137-CDS-M-pyrifera_M_contig92377:225..3451622816836.8205137-CDS-M-pyrifera_M_contig92377:225..345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92377 226..345 +
1692278207.3840244-CDS-M-pyrifera_M_contig92377:225..3451692278207.3840244-CDS-M-pyrifera_M_contig92377:225..345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92377 226..345 +
1622816836.832751-CDS-M-pyrifera_M_contig92377:588..7651622816836.832751-CDS-M-pyrifera_M_contig92377:588..765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92377 589..765 +
1692278207.3963668-CDS-M-pyrifera_M_contig92377:588..7651692278207.3963668-CDS-M-pyrifera_M_contig92377:588..765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92377 589..765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92377.21378.1

>prot_M-pyrifera_M_contig92377.21378.1 ID=prot_M-pyrifera_M_contig92377.21378.1|Name=mRNA_M-pyrifera_M_contig92377.21378.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MHQDAHEFLNFLLNNIGEVLQAEHKKEWEGKKAKRMLENSSESAWKKYPR
TLGGTFVHDVFEGVLTNETRCLCCETITSRDEGFLDLSVDVEENSSLTH
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mRNA from alignment at M-pyrifera_M_contig92377:211..765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92377.21378.1 ID=mRNA_M-pyrifera_M_contig92377.21378.1|Name=mRNA_M-pyrifera_M_contig92377.21378.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig92377:211..765+ (Macrocystis pyrifera P11B4 male)
CTGTTCAGGGGCAACATGCACCAGGACGCACACGAATTCCTCAACTTTCT CCTCAATAACATTGGCGAAGTGCTCCAGGCGGAACACAAAAAGGAATGGG AGGGAAAGAAAGCGAAGCGAATGCTTGAGAACTCTGTGACAGAAAGAGAG AGGAGTGAAGCGAAGAGAGCCATTGGAGAGAGCTCCAGGGCAGACTCTGG CGCTGACAGGGAGAGTCAGAGCTGCGAATCGGCTGAAGAGAAAGAGAGAA ACAAAAAAGAGAGCGGCAGAGAAACTCGGGAGGAAGGACAGAGCGAAAGA GAGAGAGTGAGCGAGAGAAAGAGTGGGAACGAGAGAGAGAGACGGAGTGG GAGTGGGAGCGACGAAAGTGAGAGTGAGAGTGAGAGTGCTTGGAAGAAAT ACCCCAGGACTCTGGGTGGCACCTTCGTTCACGACGTCTTTGAGGGAGTG CTCACCAACGAAACTCGCTGCCTCTGCTGCGAGACAATCACAAGCAGAGA CGAAGGATTCCTCGACCTCAGCGTCGACGTAGAAGAGAACTCTTCGCTCA CCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92377:211..765+

>mRNA_M-pyrifera_M_contig92377.21378.1 ID=mRNA_M-pyrifera_M_contig92377.21378.1|Name=mRNA_M-pyrifera_M_contig92377.21378.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig92377:211..765+ (Macrocystis pyrifera P11B4 male)
ATGCACCAGGACGCACACGAATTCCTCAACTTTCTCCTCAATAACATTGG
CGAAGTGCTCCAGGCGGAACACAAAAAGGAATGGGAGGGAAAGAAAGCGA
AGCGAATGCTTGAGAACTCTATGCACCAGGACGCACACGAATTCCTCAAC
TTTCTCCTCAATAACATTGGCGAAGTGCTCCAGGCGGAACACAAAAAGGA
ATGGGAGGGAAAGAAAGCGAAGCGAATGCTTGAGAACTCTAGTGAGAGTG
CTTGGAAGAAATACCCCAGGACTCTGGGTGGCACCTTCGTTCACGACGTC
TTTGAGGGAGTGCTCACCAACGAAACTCGCTGCCTCTGCTGCGAGACAAT
CACAAGCAGAGACGAAGGATTCCTCGACCTCAGCGTCGACGTAGAAGAGA
ACTCTTCGCTCACCCACAGTGAGAGTGCTTGGAAGAAATACCCCAGGACT
CTGGGTGGCACCTTCGTTCACGACGTCTTTGAGGGAGTGCTCACCAACGA
AACTCGCTGCCTCTGCTGCGAGACAATCACAAGCAGAGACGAAGGATTCC
TCGACCTCAGCGTCGACGTAGAAGAGAACTCTTCGCTCACCCAC
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