mRNA_M-pyrifera_M_contig92338.21374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92338.21374.1
Unique NamemRNA_M-pyrifera_M_contig92338.21374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92338.21374.1 vs. uniprot
Match: A0A2E7K999_9PLAN (Thioredoxin domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K999_9PLAN)

HSP 1 Score: 510 bits (1314), Expect = 2.480e-171
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1 
Query:    1 ACPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRVYINVRHPSLATTESARILSGTAHSKYEFKLYRRGAVRGRVLSPDNQMPCSGVQVQLISKRAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFYGEDKNWKDVHIKPGETTELGDLKAKRLPLIRGIVLLPNGQPAVNALVMQGDQQTQ 765
            ACPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRVYINVRHPSLATTESARILSGTAHSKYEFKLYRRGAVRGRVLSPDNQMPCSGVQVQLISKRAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFYGEDKNWKDVHIKPGETTELGDLKAKRLPLIRGIVLLPNGQPAVNALVMQGDQQTQ
Sbjct:  543 ACPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRVYINVRHPSLATTESARILSGTAHSKYEFKLYRRGAVRGRVLSPDNQMPCSGVQVQLISKRAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFYGEDKNWKDVHIKPGETTELGDLKAKRLPLIRGIVLLPNGQPAVNALVMQGDQQTQ 797
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BLAST of mRNA_M-pyrifera_M_contig92338.21374.1 vs. uniprot
Match: A0A2E2C1G8_9PLAN (Thioredoxin domain-containing protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C1G8_9PLAN)

HSP 1 Score: 447 bits (1149), Expect = 8.710e-147
Identity = 222/255 (87.06%), Postives = 236/255 (92.55%), Query Frame = 1 
Query:    1 ACPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRVYINVRHPSLATTESARILSGTAHSKYEFKLYRRGAVRGRVLSPDNQMPCSGVQVQLISKRAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFYGEDKNWKDVHIKPGETTELGDLKAKRLPLIRGIVLLPNGQPAVNALVMQGDQQTQ 765
            ACPTSDAEGRLVIEGIPADVDCNVLVKH+DYVNGLIEN RTSKENTITL+KGVPVEIQAIEAETG+PATEA + I+GYPKSINV NVPVDSEGKY TRFPI+S+ V I+ RHPSLATTE AR+  GTAHSKY+FKLYRRGAVRGRVLS DNQMPCSGVQVQLIS R+IIL SYTDSEGRFEM PPSGRFGI+VG+GNGFYGEDK WKDV IKPGETTEL DLKAKRLPLIRG+VLLPNGQPAVNALVMQGDQQ Q
Sbjct:  543 ACPTSDAEGRLVIEGIPADVDCNVLVKHRDYVNGLIENARTSKENTITLEKGVPVEIQAIEAETGKPATEAIVNISGYPKSINVRNVPVDSEGKYHTRFPIISNLVDISERHPSLATTEWARVHDGTAHSKYKFKLYRRGAVRGRVLSTDNQMPCSGVQVQLISNRSIILRSYTDSEGRFEMTPPSGRFGIIVGTGNGFYGEDKYWKDVRIKPGETTELEDLKAKRLPLIRGVVLLPNGQPAVNALVMQGDQQPQ 797
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BLAST of mRNA_M-pyrifera_M_contig92338.21374.1 vs. uniprot
Match: A0A517ZZS7_9PLAN (Thiol-disulfide oxidoreductase ResA n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZS7_9PLAN)

HSP 1 Score: 434 bits (1117), Expect = 4.770e-142
Identity = 215/254 (84.65%), Postives = 231/254 (90.94%), Query Frame = 1 
Query:    4 CPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRVYINVRHPSLATTESARILSGTAHSKYEFKLYRRGAVRGRVLSPDNQMPCSGVQVQLISKRAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFYGEDKNWKDVHIKPGETTELGDLKAKRLPLIRGIVLLPNGQPAVNALVMQGDQQTQ 765
            CPTSDAEGRLVI GIPADVDC VLVKH+DYV+ +IEN  TSKEN+ITL+ GVPVEIQAIEAETG+PATEA + I+GYPKSINV NVPVDSEGKYRTRFPI+S+ V I+VRHPSLATTE ARI  GTAHSKYEFKLYRRG VRGRVL+PD Q+PCSGVQVQLIS RAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFYG D+NWKDVHIKPGETTEL DL A+RLPLIRG+VLLPNGQPAVN LVM GDQQ Q
Sbjct:  544 CPTSDAEGRLVIAGIPADVDCKVLVKHQDYVSSIIENASTSKENSITLETGVPVEIQAIEAETGKPATEAIVNISGYPKSINVRNVPVDSEGKYRTRFPIISNLVDISVRHPSLATTEWARIHDGTAHSKYEFKLYRRGVVRGRVLTPDKQVPCSGVQVQLISNRAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFYGADRNWKDVHIKPGETTELEDLTARRLPLIRGVVLLPNGQPAVNTLVMHGDQQPQ 797
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BLAST of mRNA_M-pyrifera_M_contig92338.21374.1 vs. uniprot
Match: A0A517V6F4_9PLAN (Thiol-disulfide oxidoreductase ResA n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517V6F4_9PLAN)

HSP 1 Score: 431 bits (1108), Expect = 1.020e-140
Identity = 212/254 (83.46%), Postives = 232/254 (91.34%), Query Frame = 1 
Query:    4 CPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRVYINVRHPSLATTESARILSGTAHSKYEFKLYRRGAVRGRVLSPDNQMPCSGVQVQLISKRAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFYGEDKNWKDVHIKPGETTELGDLKAKRLPLIRGIVLLPNGQPAVNALVMQGDQQTQ 765
            C  SDA GRLVIEGIPADVDC VLVKH+DYV+ LIEN RTSKEN+ITL++GVPVEIQAIEAETG+PATEAT+ I+GYPKSIN+ N+PVDSEGKYRTRFPI+S+ V I+VRHPSLATTE ARI SGTAHSKYEFKLYRRG V G VL+P+NQMPCSGV+VQLIS RAIILSS+TDSEGRFEMNPPSGRFGIVVG+GNGFYGEDKNWKDVHIKPGETTEL DLKAKRLPLIRG+VLLPNGQPAVN LV  G+ Q Q
Sbjct:  544 CSASDAGGRLVIEGIPADVDCKVLVKHQDYVSSLIENARTSKENSITLEEGVPVEIQAIEAETGKPATEATVNISGYPKSINIRNIPVDSEGKYRTRFPIISNLVDISVRHPSLATTEWARIHSGTAHSKYEFKLYRRGTVHGHVLNPENQMPCSGVKVQLISNRAIILSSFTDSEGRFEMNPPSGRFGIVVGTGNGFYGEDKNWKDVHIKPGETTELEDLKAKRLPLIRGVVLLPNGQPAVNTLVTHGNDQPQ 797
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BLAST of mRNA_M-pyrifera_M_contig92338.21374.1 vs. uniprot
Match: A0A355G602_9PLAN (Thioredoxin domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355G602_9PLAN)

HSP 1 Score: 345 bits (884), Expect = 8.890e-114
Identity = 172/203 (84.73%), Postives = 185/203 (91.13%), Query Frame = 1 
Query:  157 VPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRVYINVRHPSLATTESARILSGTAHSKYEFKLYRRGAVRGRVLSPDNQMPCSGVQVQLISKRAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFYGEDKNWKDVHIKPGETTELGDLKAKRLPLIRGIVLLPNGQPAVNALVMQGDQQTQ 765
            +PVEIQAIEAETG+PATEA + I+GYPKSINV NVPVDSEGKY TRFPI+S+ V I+ RHPSLATTE AR+  GTAHSKY+FKLYRRGAVRGRVLS DNQMPCSGVQVQLIS R+IIL SYTDSEGRFEM PPSGRFGI+VG+GNGFYGEDK WKDV IKPGETTEL DLKAKRLPLIRG+VLLPNGQPAVNALVMQGDQQ Q
Sbjct:    1 MPVEIQAIEAETGKPATEAIVNISGYPKSINVRNVPVDSEGKYHTRFPIISNLVDISERHPSLATTEWARVHDGTAHSKYKFKLYRRGAVRGRVLSTDNQMPCSGVQVQLISNRSIILRSYTDSEGRFEMTPPSGRFGIIVGTGNGFYGEDKYWKDVRIKPGETTELEDLKAKRLPLIRGVVLLPNGQPAVNALVMQGDQQPQ 203
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BLAST of mRNA_M-pyrifera_M_contig92338.21374.1 vs. uniprot
Match: A0A3D3R0W9_9PLAN (Peptidase_M56 domain-containing protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R0W9_9PLAN)

HSP 1 Score: 214 bits (545), Expect = 1.210e-61
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 ACPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRV 318
            ACPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRV
Sbjct:  543 ACPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFPIMSHRV 648
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BLAST of mRNA_M-pyrifera_M_contig92338.21374.1 vs. uniprot
Match: A0A355G4I0_9PLAN (Peptidase_M56 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355G4I0_9PLAN)

HSP 1 Score: 107 bits (266), Expect = 9.890e-23
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 ACPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLDKGV 159
            ACPTSDAEGRLVIEGIPADVDCNVLVKH+DYVNGLIEN RTSKENTITL+KGV
Sbjct:  543 ACPTSDAEGRLVIEGIPADVDCNVLVKHRDYVNGLIENARTSKENTITLEKGV 595
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92338.21374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2E7K999_9PLAN2.480e-171100.00Thioredoxin domain-containing protein n=2 Tax=Gime... [more]
A0A2E2C1G8_9PLAN8.710e-14787.06Thioredoxin domain-containing protein n=4 Tax=Plan... [more]
A0A517ZZS7_9PLAN4.770e-14284.65Thiol-disulfide oxidoreductase ResA n=2 Tax=Gimesi... [more]
A0A517V6F4_9PLAN1.020e-14083.46Thiol-disulfide oxidoreductase ResA n=2 Tax=Gimesi... [more]
A0A355G602_9PLAN8.890e-11484.73Thioredoxin domain-containing protein n=1 Tax=Plan... [more]
A0A3D3R0W9_9PLAN1.210e-61100.00Peptidase_M56 domain-containing protein n=1 Tax=Gi... [more]
A0A355G4I0_9PLAN9.890e-2394.34Peptidase_M56 domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92338contigM-pyrifera_M_contig92338:3..767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size765
Cds size765
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.6446543-CDS-M-pyrifera_M_contig92338:2..7671622816836.6446543-CDS-M-pyrifera_M_contig92338:2..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92338 3..767 -
1692278207.2870166-CDS-M-pyrifera_M_contig92338:2..7671692278207.2870166-CDS-M-pyrifera_M_contig92338:2..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92338 3..767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92338.21374.1prot_M-pyrifera_M_contig92338.21374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92338 3..767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92338.21374.1

>prot_M-pyrifera_M_contig92338.21374.1 ID=prot_M-pyrifera_M_contig92338.21374.1|Name=mRNA_M-pyrifera_M_contig92338.21374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
ACPTSDAEGRLVIEGIPADVDCNVLVKHKDYVNGLIENVRTSKENTITLD
KGVPVEIQAIEAETGEPATEATIRITGYPKSINVSNVPVDSEGKYRTRFP
IMSHRVYINVRHPSLATTESARILSGTAHSKYEFKLYRRGAVRGRVLSPD
NQMPCSGVQVQLISKRAIILSSYTDSEGRFEMNPPSGRFGIVVGSGNGFY
GEDKNWKDVHIKPGETTELGDLKAKRLPLIRGIVLLPNGQPAVNALVMQG
DQQTQ
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mRNA from alignment at M-pyrifera_M_contig92338:3..767-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92338.21374.1 ID=mRNA_M-pyrifera_M_contig92338.21374.1|Name=mRNA_M-pyrifera_M_contig92338.21374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=765bp|location=Sequence derived from alignment at M-pyrifera_M_contig92338:3..767- (Macrocystis pyrifera P11B4 male)
GCCTGTCCCACATCAGATGCGGAGGGCAGACTTGTGATCGAAGGAATTCC
AGCAGATGTCGATTGTAATGTGCTCGTCAAACACAAGGACTATGTCAACG
GTTTAATCGAAAATGTCAGAACATCTAAAGAGAACACAATCACTCTGGAT
AAAGGAGTGCCTGTAGAAATTCAAGCAATCGAGGCAGAAACGGGGGAACC
TGCGACAGAAGCCACCATCAGAATCACAGGTTATCCGAAAAGTATTAACG
TAAGTAACGTTCCCGTAGATTCGGAAGGTAAGTATCGCACTCGATTCCCG
ATCATGTCTCATCGCGTATATATCAATGTGCGACATCCATCGCTGGCGAC
AACTGAATCAGCTCGAATACTTAGTGGAACGGCTCACAGTAAGTATGAAT
TCAAGCTATACCGTCGAGGAGCAGTGCGCGGACGTGTATTGAGCCCAGAT
AACCAGATGCCGTGTTCCGGAGTGCAGGTGCAACTCATCAGCAAGCGGGC
AATTATTCTAAGTAGTTACACCGACAGTGAGGGACGCTTCGAAATGAACC
CGCCATCCGGCAGGTTTGGAATTGTTGTTGGTTCAGGAAATGGTTTCTAT
GGGGAAGACAAGAATTGGAAAGACGTCCACATTAAACCTGGCGAAACGAC
GGAACTGGGAGATCTAAAAGCCAAACGGCTTCCGCTGATTCGTGGGATCG
TGCTATTACCGAATGGCCAACCTGCCGTCAATGCATTGGTGATGCAGGGC
GATCAGCAAACTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92338:3..767-

>mRNA_M-pyrifera_M_contig92338.21374.1 ID=mRNA_M-pyrifera_M_contig92338.21374.1|Name=mRNA_M-pyrifera_M_contig92338.21374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig92338:3..767- (Macrocystis pyrifera P11B4 male)
GCCTGTCCCACATCAGATGCGGAGGGCAGACTTGTGATCGAAGGAATTCC
AGCAGATGTCGATTGTAATGTGCTCGTCAAACACAAGGACTATGTCAACG
GTTTAATCGAAAATGTCAGAACATCTAAAGAGAACACAATCACTCTGGAT
AAAGGAGTGCCTGTAGAAATTCAAGCAATCGAGGCAGAAACGGGGGAACC
TGCGACAGAAGCCACCATCAGAATCACAGGTTATCCGAAAAGTATTAACG
TAAGTAACGTTCCCGTAGATTCGGAAGGTAAGTATCGCACTCGATTCCCG
ATCATGTCTCATCGCGTATATATCAATGTGCGACATCCATCGCTGGCGAC
AACTGAATCAGCTCGAATACTTAGTGGAACGGCTCACAGTAAGTATGAAT
TCAAGCTATACCGTCGAGGAGCAGTGCGCGGACGTGTATTGAGCCCAGAT
AACCAGATGCCGTGTTCCGGAGTGCAGGTGCAACTCATCAGCAAGCGGGC
AATTATTCTAAGTAGTTACACCGACAGTGAGGGACGCTTCGAAATGAACC
CGCCATCCGGCAGGTTTGGAATTGTTGTTGGTTCAGGAAATGGTTTCTAT
GGGGAAGACAAGAATTGGAAAGACGTCCACATTAAACCTGGCGAAACGAC
GGAACTGGGAGATCTAAAAGCCAAACGGCTTCCGCTGATTCGTGGGATCG
TGCTATTACCGAATGGCCAACCTGCCGTCAATGCATTGGTGATGCAGGGC
GATCAGCAAACTCAGGCCTGTCCCACATCAGATGCGGAGGGCAGACTTGT
GATCGAAGGAATTCCAGCAGATGTCGATTGTAATGTGCTCGTCAAACACA
AGGACTATGTCAACGGTTTAATCGAAAATGTCAGAACATCTAAAGAGAAC
ACAATCACTCTGGATAAAGGAGTGCCTGTAGAAATTCAAGCAATCGAGGC
AGAAACGGGGGAACCTGCGACAGAAGCCACCATCAGAATCACAGGTTATC
CGAAAAGTATTAACGTAAGTAACGTTCCCGTAGATTCGGAAGGTAAGTAT
CGCACTCGATTCCCGATCATGTCTCATCGCGTATATATCAATGTGCGACA
TCCATCGCTGGCGACAACTGAATCAGCTCGAATACTTAGTGGAACGGCTC
ACAGTAAGTATGAATTCAAGCTATACCGTCGAGGAGCAGTGCGCGGACGT
GTATTGAGCCCAGATAACCAGATGCCGTGTTCCGGAGTGCAGGTGCAACT
CATCAGCAAGCGGGCAATTATTCTAAGTAGTTACACCGACAGTGAGGGAC
GCTTCGAAATGAACCCGCCATCCGGCAGGTTTGGAATTGTTGTTGGTTCA
GGAAATGGTTTCTATGGGGAAGACAAGAATTGGAAAGACGTCCACATTAA
ACCTGGCGAAACGACGGAACTGGGAGATCTAAAAGCCAAACGGCTTCCGC
TGATTCGTGGGATCGTGCTATTACCGAATGGCCAACCTGCCGTCAATGCA
TTGGTGATGCAGGGCGATCAGCAAACTCAG
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