mRNA_M-pyrifera_M_contig92335.21372.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92335.21372.1
Unique NamemRNA_M-pyrifera_M_contig92335.21372.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: A0A7S3NNZ0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNZ0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.560e-9
Identity = 51/163 (31.29%), Postives = 79/163 (48.47%), Query Frame = 1
Query:    7 LQSILRRMAGSAGDGKRSALLEAFKKVDKDGSGQLSRSELIAALSALGVTVQEWEASLLMDRFDADGDGSVSYAEFADTILLAATKAPPKSTSTPADWARSVVLTAVHRAAANATGRRKHAGGKRGVKTSRDRSAIMRVFRSLDVDGSGTLTTRELARGIASL 495
            L++ +RR+A   G+G+      AF+ +D+DGSG+L+R E   AL +  + +   + + ++D FD+DGDG +SY EF                   AD     V++ +  A          A  KR  K S   SA   VFR+ D +GSG +  +E  RG+  L
Sbjct:  951 LRTEIRRIAQHRGNGRGPNYGAAFRDLDRDGSGRLNRREFRRALESFNLNLSSADLTQIIDHFDSDGDGHISYREFVKF----------------ADANLEDVVSKIEDAV--------RAEIKRIAKHSS--SAFASVFRAFDENGSGIINRQEFKRGLEKL 1087          
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: A0A7S1U271_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U271_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.570e-8
Identity = 57/178 (32.02%), Postives = 84/178 (47.19%), Query Frame = 1
Query:   70 EAFKKVDKDGSGQLSRSELIAALSALGVTVQEWEASLLMDRFDADGDGSVSYAEFADTILLAATKAPPKSTST----PADWARSVVLTAVHRAAANATGRRKHAGGKRGVKTSRDRSAIMRVFRSLDVDGSGTLTTRELARGIASLCERELKRWEAEAIAAAFDADGSGTVSYSEFAD 591
            E F + D D SG +SR E   AL  L V + + E   +++ FDADGDG +SYAEF +   +A  + PP   S+    P+   R       +R A +          +R  + SR  ++   +F   D D SG ++  E  R +  L  R L   E   I  AFD+   G +SY+EF +
Sbjct: 1519 ELFAEFDDDESGSISRDEFKRALVKLRVRLDDSELYDIVEAFDADGDGHISYAEFLE---VAGVEKPPSRPSSXXXXPSRERRDSRDGGRNRRAFDGLKDHVQREVRRAFRVSR--TSPKELFAEFDDDASGNISRDEFKRALKKLRVR-LDDSELYDIVEAFDSSNDGHISYAEFCE 1690          
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: F0YK98_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK98_AURAN)

HSP 1 Score: 60.1 bits (144), Expect = 3.220e-8
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   34 GSAGDGKRSALLEA--FKKVDKDGSGQLSRSELIAALSALGVTVQEWEASLLMDRFDADGDGSVSYAEFA 237
            G  GD   S  L    F+++D+DG G++ R EL  AL+ LGV +   EA  ++D+FDADGDG++   EFA
Sbjct:   64 GETGDEPSSRALRKAFFRRLDEDGDGRVKRGELKRALAKLGVPLSGAEADAVLDKFDADGDGTIDTKEFA 133          
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: A0A1Y1W1E9_9FUNG (EF-hand n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W1E9_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 3.590e-8
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 QALQSILRRMAGSAGDGKRSALLEAFKKVDKDGSGQLSRSELIAALSALGVTVQEWEASLLMDRFDADGDGSVSYAEFA 237
            Q LQ +  + A   GD  +  L EAF K DK+G G +S  EL +A+ +LG  V E EA+ +++  D DGDG VS+ EFA
Sbjct:   74 QFLQFMAHKYAEDKGDDTK--LREAFNKYDKNGDGAISAEELRSAMLSLGEDVTEEEANKMIEEADIDGDGHVSFEEFA 150          
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: W2Q5F5_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2Q5F5_PHYPN)

HSP 1 Score: 62.8 bits (151), Expect = 4.740e-8
Identity = 58/199 (29.15%), Postives = 91/199 (45.73%), Query Frame = 1
Query:    4 ALQSILRRM----AGSAGDGKRSALL-EAFKKVDKDGSGQLSRSELIAALSALGVTVQEWEASLLMDRFDADGDGSVSYAEFADTILLAATKAPPKS-TSTPADWARSVVLTAVHRAAANATGRRKHAGGKRGVKTSRDRSAIMRVFRSLDVDGSGTLTTRELARGIASLCERELKRWEAEAIAAAFDADGSGTVSYSE 582
            A+++ LR M    +G   +  ++ALL + F+  D+DGSG +   E + A+ +L     + E   L DR+DAD DG +SYAEFA  I   + +        +  +  R  +L                AGGK G++T      +  + R +D +G+G +   E   GIA L   +    E E     FD D SG ++  E
Sbjct:    8 AMETKLREMFEVRSGYRDEHSQAALLAKHFRSFDRDGSGVVDFDEFVRAMLSLNFVGVQAETEALFDRYDADLDGILSYAEFAQAITGCSGRVLLNGRVRSLLERIREGIL---------------EAGGKNGIRT------LGVILRRMDQNGNGMVEFEEFRDGIAHLGGSDAGPEELERTFRCFDRDQSGKITVDE 185          
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: A0A5A8E5M1_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E5M1_CAFRO)

HSP 1 Score: 62.4 bits (150), Expect = 5.600e-8
Identity = 48/161 (29.81%), Postives = 71/161 (44.10%), Query Frame = 1
Query:   19 LRRMAGSAGDGKRSALLEAFKKVDKDGSGQLSRSELIAALSALGVT--VQEWEASLLMDRFDADGDGSVSYAEFADTILLAATKAPPKSTSTPADWARSVVLTAVHRAAANATGRRKHAGGKRGVKTSRDRSAIMRVFRSLDVDGSGTLTTRELARGIASL 495
            +RR     G  +R A  E F ++D  GSG LSR EL +AL  +G+   +Q  E  +L+ RFD DG G +SYA+FA  + +         T +      S V                              +A+ RVFR +D +G+G L+  EL   + S+
Sbjct:  113 IRREMDRRGFSERGAAREVFGQIDSGGSGFLSRGELASALRRIGLRRGLQAAEWDVLVQRFDTDGSGRISYADFARRLGVDGGSGGLSVTGSSFGTGVSSV------------------------------AAVRRVFRGVDTNGTGQLSASELESAVRSM 243          
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: A0A5A8CGF9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CGF9_CAFRO)

HSP 1 Score: 62.4 bits (150), Expect = 6.640e-8
Identity = 57/184 (30.98%), Postives = 86/184 (46.74%), Query Frame = 1
Query:   19 LRRMAGSAGDGKRSALLEAFKKVDKDGSGQLSRSELIAALSALGVT--VQEWEASLLMDRFDADGDGSVSYAEFAD-----------TILLAATKAP------------PKSTSTPADWARSVVLTAVHRAAANATGRRKHAGGKRGVKTSRDRSAIMRVFRSLDVDGSGTLTTRELARGIASL 495
            +RR     G  +R A  E F ++D  GSG LSR EL +AL  +G+   +Q  E  +L+ RFD DG G +SYA+FA            ++  ++  +P            P    +PA    + V  A   A A+A       G   GV +    +A+ RVFR +D +G+G L+  EL   + S+
Sbjct:  113 IRREMDRRGFSERGAAREVFGQIDSGGSGFLSRGELASALRRIGLRRGLQAAEWDVLVQRFDTDGSGRISYADFARRLGVDGGSGGLSVTGSSFGSPGGRRGASGRGIGPDPAVSPARRLLAAVDAADTAAEADAGVAPWGTGKTAGVSSV---AAVRRVFRGVDTNGTGQLSASELESAVRSM 293          
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: A0A5A8EJX8_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EJX8_CAFRO)

HSP 1 Score: 62.4 bits (150), Expect = 6.920e-8
Identity = 57/184 (30.98%), Postives = 86/184 (46.74%), Query Frame = 1
Query:   19 LRRMAGSAGDGKRSALLEAFKKVDKDGSGQLSRSELIAALSALGVT--VQEWEASLLMDRFDADGDGSVSYAEFAD-----------TILLAATKAP------------PKSTSTPADWARSVVLTAVHRAAANATGRRKHAGGKRGVKTSRDRSAIMRVFRSLDVDGSGTLTTRELARGIASL 495
            +RR     G  +R A  E F ++D  GSG LSR EL +AL  +G+   +Q  E  +L+ RFD DG G +SYA+FA            ++  ++  +P            P    +PA    + V  A   A A+A       G   GV +    +A+ RVFR +D +G+G L+  EL   + S+
Sbjct:  113 IRREMDRRGFSERGAAREVFGQIDSGGSGFLSRGELASALRRIGLRRGLQAAEWDVLVQRFDTDGSGRISYADFARRLGVDGGSGGLSVTGSSFGSPGGRRGASGRGIGPDPAVSPARRLLAAVDAADTAAEADAGVAPWGTGKTAGVSSV---AAVRRVFRGVDTNGTGQLSASELESAVRSM 293          
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: J9IP78_9SPIT (EF hand family protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IP78_9SPIT)

HSP 1 Score: 61.6 bits (148), Expect = 1.110e-7
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   61 ALLEAFKKVDKDGSGQLSRSELIAALSALGVTVQEWEASLLMDRFDADGDGSVSYAEFADTI 246
            +L +AFK VD++  G+++R EL   L   G  V   E + LMDR+D DGDG++SYAEF D I
Sbjct:  499 SLYDAFKVVDENDDGRITRDELHHLLEKSGFQVSVDEINSLMDRYDKDGDGAISYAEFTDEI 560          
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Match: A0A7S1NNW1_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NNW1_9EUGL)

HSP 1 Score: 60.5 bits (145), Expect = 2.460e-7
Identity = 63/199 (31.66%), Postives = 97/199 (48.74%), Query Frame = 1
Query:   46 DGKRSALLEAFKKVDKDGSGQLSRSELIAALSALGVTVQEWEASLLMDRFDADGDGSVSYAEFADTILLAATKAPPKSTS-------TPADWARSVVLTAVHRAAAN---ATGRRKHAGG--KRGVKTSRDRSAIMR-------VFRSLDVDGSGTLTTRELARGIASLCERELKRWEAEAIAAAFDADGSGTVSYSEF 585
            + K S++L+AF+ +D D SG +S+ E  A L    + +++ E   L+  FD D DG VS+ EF + ++  +T A   S S        PA  + +       R A     A    +H G     GV  SR +S + R        F +LD D SG+L  +E A  +A+     L+  E +A+  AFD +G G VS++EF
Sbjct:   26 EAKWSSMLDAFRAIDGDKSGYVSKDEFAAILENHNLGLRDIELEALVAAFDLDRDGRVSHNEFMN-VMAGSTGAHESSWSGTATGPLRPASGSNTRATKGRPRTAERELPAARNIEHYGAILPSGV-LSRIKSLLERKWTSMRDAFLALDTDHSGSLDAQEFADILAAF-NLGLQGHELQAVVDAFDINGDGRVSHAEF 221          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92335.21372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3NNZ0_9STRA2.560e-931.29Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1U271_9STRA1.570e-832.02Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YK98_AURAN3.220e-844.29Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A1Y1W1E9_9FUNG3.590e-844.30EF-hand n=1 Tax=Linderina pennispora TaxID=61395 R... [more]
W2Q5F5_PHYPN4.740e-829.15Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A5A8E5M1_CAFRO5.600e-829.81Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CGF9_CAFRO6.640e-830.98Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8EJX8_CAFRO6.920e-830.98Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
J9IP78_9SPIT1.110e-748.39EF hand family protein n=1 Tax=Oxytricha trifallax... [more]
A0A7S1NNW1_9EUGL2.460e-731.66Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92335contigM-pyrifera_M_contig92335:150..749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.6
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog3711.Bra017355.1-P
KEGG koko:K13448
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0043167,GO:0043169,GO:0046872
EggNOG free text desc.EF-hand domain
EggNOG OGs37TZV@33090,3GHVI@35493,3HTMI@3699,COG5126@1,KOG0027@2759
COG Functional cat.T
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size600
Cds size573
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.5684662-CDS-M-pyrifera_M_contig92335:149..7221622816836.5684662-CDS-M-pyrifera_M_contig92335:149..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92335 150..722 -
1692278207.2424371-CDS-M-pyrifera_M_contig92335:149..7221692278207.2424371-CDS-M-pyrifera_M_contig92335:149..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92335 150..722 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.580363-UTR-M-pyrifera_M_contig92335:722..7491622816836.580363-UTR-M-pyrifera_M_contig92335:722..749Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92335 723..749 -
1692278207.264538-UTR-M-pyrifera_M_contig92335:722..7491692278207.264538-UTR-M-pyrifera_M_contig92335:722..749Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92335 723..749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92335.21372.1prot_M-pyrifera_M_contig92335.21372.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92335 150..722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92335.21372.1

>prot_M-pyrifera_M_contig92335.21372.1 ID=prot_M-pyrifera_M_contig92335.21372.1|Name=mRNA_M-pyrifera_M_contig92335.21372.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
MAGSAGDGKRSALLEAFKKVDKDGSGQLSRSELIAALSALGVTVQEWEAS
LLMDRFDADGDGSVSYAEFADTILLAATKAPPKSTSTPADWARSVVLTAV
HRAAANATGRRKHAGGKRGVKTSRDRSAIMRVFRSLDVDGSGTLTTRELA
RGIASLCERELKRWEAEAIAAAFDADGSGTVSYSEFADALT
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mRNA from alignment at M-pyrifera_M_contig92335:150..749-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92335.21372.1 ID=mRNA_M-pyrifera_M_contig92335.21372.1|Name=mRNA_M-pyrifera_M_contig92335.21372.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig92335:150..749- (Macrocystis pyrifera P11B4 male)
CAAGCGCTTCAGTCTATCTTGCGGCGTATGGCTGGTTCAGCTGGTGATGG CAAACGGTCAGCATTGTTGGAGGCGTTCAAGAAAGTGGATAAGGATGGGA GTGGCCAATTGAGTCGCTCGGAATTGATAGCAGCTTTGAGTGCTCTTGGT GTCACAGTGCAAGAGTGGGAGGCAAGTTTGTTGATGGATCGGTTTGATGC TGATGGAGATGGCTCAGTGTCTTATGCGGAGTTTGCAGACACAATTCTCT TGGCTGCAACAAAAGCCCCCCCGAAATCAACATCCACCCCAGCAGACTGG GCAAGATCTGTGGTACTAACGGCGGTCCATCGGGCAGCAGCAAATGCAAC GGGGAGACGGAAACACGCTGGTGGGAAGAGAGGGGTGAAGACGTCACGCG ATCGATCTGCTATTATGCGTGTATTCCGTAGTTTGGATGTCGATGGGAGT GGGACATTGACAACCCGTGAGCTTGCACGAGGCATTGCGAGTTTGTGTGA AAGAGAATTGAAGCGCTGGGAAGCAGAAGCAATTGCAGCTGCGTTTGATG CTGATGGAAGTGGCACTGTGTCCTATTCAGAGTTTGCAGACGCACTCACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92335:150..749-

>mRNA_M-pyrifera_M_contig92335.21372.1 ID=mRNA_M-pyrifera_M_contig92335.21372.1|Name=mRNA_M-pyrifera_M_contig92335.21372.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig92335:150..749- (Macrocystis pyrifera P11B4 male)
ATGGCTGGTTCAGCTGGTGATGGCAAACGGTCAGCATTGTTGGAGGCGTT
CAAGAAAGTGGATAAGGATGGGAGTGGCCAATTGAGTCGCTCGGAATTGA
TAGCAGCTTTGAGTGCTCTTGGTGTCACAGTGCAAGAGTGGGAGGCAAGT
TTGTTGATGGATCGGTTTGATGCTGATGGAGATGGCTCAGTGTCTTATGC
GGAGTTTGCAGACACAATTCTCTTGGCTGCAACAAAAGCCCCCCCGAAAT
CAACATCCACCCCAGCAGACTGGGCAAGATCTGTGGTACTAACGGCGGTC
CATCGGGCAGCAGCAAATGCAACGGGGAGACGGAAACACGCTGGTGGGAA
GAGAGGGGTGAAGACGTCACGCGATCGATCTGCTATTATGCGTGTATTCC
GTAGTTTGGATGTCGATGGGAGTGGGACATTGACAACCCGTGAGCTTGCA
CGAGGCATTGCGAGTTTGTGTGAAAGAGAATTGAAGCGCTGGGAAGCAGA
AGCAATTGCAGCTGCGTTTGATGCTGATGGAAGTGGCACTGTGTCCTATT
CAGAGTTTGCAGACGCACTCACAATGGCTGGTTCAGCTGGTGATGGCAAA
CGGTCAGCATTGTTGGAGGCGTTCAAGAAAGTGGATAAGGATGGGAGTGG
CCAATTGAGTCGCTCGGAATTGATAGCAGCTTTGAGTGCTCTTGGTGTCA
CAGTGCAAGAGTGGGAGGCAAGTTTGTTGATGGATCGGTTTGATGCTGAT
GGAGATGGCTCAGTGTCTTATGCGGAGTTTGCAGACACAATTCTCTTGGC
TGCAACAAAAGCCCCCCCGAAATCAACATCCACCCCAGCAGACTGGGCAA
GATCTGTGGTACTAACGGCGGTCCATCGGGCAGCAGCAAATGCAACGGGG
AGACGGAAACACGCTGGTGGGAAGAGAGGGGTGAAGACGTCACGCGATCG
ATCTGCTATTATGCGTGTATTCCGTAGTTTGGATGTCGATGGGAGTGGGA
CATTGACAACCCGTGAGCTTGCACGAGGCATTGCGAGTTTGTGTGAAAGA
GAATTGAAGCGCTGGGAAGCAGAAGCAATTGCAGCTGCGTTTGATGCTGA
TGGAAGTGGCACTGTGTCCTATTCAGAGTTTGCAGACGCACTCACA
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