mRNA_M-pyrifera_M_contig92329.21369.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92329.21369.1
Unique NamemRNA_M-pyrifera_M_contig92329.21369.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: A0A0J1B4I7_RHOIS (Transport facilitation n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B4I7_RHOIS)

HSP 1 Score: 481 bits (1238), Expect = 5.730e-165
Identity = 252/254 (99.21%), Postives = 253/254 (99.61%), Query Frame = 1
Query:    1 VVWWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            VVWWDADVSRPLGLAEQHTAVDASGLAQTAL+ASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQR RLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR
Sbjct:  151 VVWWDADVSRPLGLAEQHTAVDASGLAQTALVASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRHRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 404          
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: Q7UZ70_RHOBA (Probable outer membrane channel protein n=9 Tax=Rhodopirellula TaxID=265488 RepID=Q7UZ70_RHOBA)

HSP 1 Score: 464 bits (1193), Expect = 2.590e-158
Identity = 241/254 (94.88%), Postives = 249/254 (98.03%), Query Frame = 1
Query:    1 VVWWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            VVWWD DV++PLGLAEQHT+VDASGLAQTALIASPY+RSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQS+RFRDNLFASSAGVRKKLT GGNLEVVQRGGFQ+NNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQR RLLASA EMQ+VL ARGAVDSQQRQILRANVAVAKR+ADLVRIETRIRNAQSKLR
Sbjct:  140 VVWWDEDVTQPLGLAEQHTSVDASGLAQTALIASPYVRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSERFRDNLFASSAGVRKKLTGGGNLEVVQRGGFQNNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRNRLLASAQEMQTVLQARGAVDSQQRQILRANVAVAKRRADLVRIETRIRNAQSKLR 393          
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: UPI001E35E45B (TolC family protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E35E45B)

HSP 1 Score: 438 bits (1127), Expect = 2.340e-148
Identity = 228/253 (90.12%), Postives = 238/253 (94.07%), Query Frame = 1
Query:    4 VWWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            VWWD  V+ PLGLA+QHT VDAS LAQTALIASPY+R LLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGS LTTGD S+RFRDNLF+SSAGVRKK+TSGGNLE+VQRGGFQ+NNSTFL PNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHL+DVTTAYWELYQARAEWLQR RLL SA EMQ VL ARG VDSQQRQILRANVAVAKR+ADLVRIETRIRNAQSKLR
Sbjct:  141 VWWDQHVTTPLGLADQHTPVDASALAQTALIASPYVRGLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSTLTTGDASERFRDNLFSSSAGVRKKMTSGGNLELVQRGGFQNNNSTFLVPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLLDVTTAYWELYQARAEWLQRSRLLESAQEMQGVLLARGEVDSQQRQILRANVAVAKRRADLVRIETRIRNAQSKLR 393          
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: M5SZ00_9BACT (Outer membrane efflux protein n=3 Tax=Rhodopirellula TaxID=265488 RepID=M5SZ00_9BACT)

HSP 1 Score: 338 bits (868), Expect = 2.340e-108
Identity = 169/253 (66.80%), Postives = 214/253 (84.58%), Query Frame = 1
Query:    4 VWWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            +WW+  +S+PLGLA+    VD   LA+T+LIASPY+RSLLTEP+I   D+VIADA+FD   F+++ +  +N+PVGS LTTG+ SDR+ DNLF+S+AGVRK+  SGGNLE+VQRGGFQ NNS++LTPNPQGTSRLE+NFSQPLLRDHG+AVN TRV+LA+I+ Q+ NSE R E++ HLVDVT AYWELYQARAE+LQR+RLL +A E+ S L ARGA+DSQQRQILRA VA+ +R++DL+RIETRIRN Q++LR
Sbjct:  219 LWWEPLISQPLGLADHTFPVDVVDLAETSLIASPYVRSLLTEPKIRFNDMVIADAEFDTTAFVESKFARSNEPVGSVLTTGNSSDRYLDNLFSSAAGVRKRYRSGGNLELVQRGGFQDNNSSYLTPNPQGTSRLEINFSQPLLRDHGRAVNTTRVLLAQINVQLANSETRNEVEQHLVDVTKAYWELYQARAEFLQRKRLLHAAEELHSKLLARGAIDSQQRQILRAEVAMTQRRSDLIRIETRIRNVQARLR 471          
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: M5U234_9BACT (Outer membrane efflux protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5U234_9BACT)

HSP 1 Score: 333 bits (855), Expect = 2.500e-107
Identity = 161/252 (63.89%), Postives = 212/252 (84.13%), Query Frame = 1
Query:    7 WWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            WW++ + +PLGLA++  AVD   LA+T+L+ASPY+R LLTEP++   D+VIADA+FD   F+++ +  TN+PVGS LTTG+ S+R+ DNLF+SSAG+RK+  SGGN+E+VQRGGFQSNNST+LTPNPQGTSRLE+NF+QPLLRDHG+AVN TRV+LA+I+ Q+  SE R E++ HLVDVT AYW+LYQARAE+LQR+RLL +A E+ + L ARG +DSQQRQILRA VA+ +R++DL+RIE RIRN Q++LR
Sbjct:  159 WWESLIGQPLGLAQETIAVDVCQLAETSLVASPYVRGLLTEPKVRYNDMVIADAEFDTTAFVESKFARTNEPVGSVLTTGNSSERYLDNLFSSSAGIRKRYRSGGNVEIVQRGGFQSNNSTYLTPNPQGTSRLEINFAQPLLRDHGRAVNTTRVLLAQINVQLAKSETRNEVEQHLVDVTRAYWDLYQARAEYLQRKRLLQAAEELHAKLLARGTIDSQQRQILRAEVAITQRRSDLIRIEARIRNGQARLR 410          
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: A0A5C6AV40_9BACT (Outer membrane efflux protein n=2 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AV40_9BACT)

HSP 1 Score: 314 bits (804), Expect = 9.620e-102
Identity = 160/253 (63.24%), Postives = 203/253 (80.24%), Query Frame = 1
Query:    4 VWWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            +WW   V++PL L      VDA+ L +T+L++SPYI  LLTEP+I   D VIADAQFD L+F+DA +T TNDP+GS LTTGD S RFRD+LF S+ G+RK+  +GGN+E+VQRGGFQSNNSTFL PN QGTSRLELNFSQPLLRD G+AVN TRV+LA ID ++T +EVR +I+ HLVDVT AYWELYQARAE++QR RL  +A+++ + L  R  +DSQQRQILRA VA+ +R+++L+RI+TRI NAQS+LR
Sbjct:    1 MWWQVMVAQPLDLGRP-VPVDATLLVETSLMSSPYILGLLTEPKIRCNDFVIADAQFDTLSFIDAKFTGTNDPIGSVLTTGDASTRFRDDLFGSAIGLRKQNRTGGNVELVQRGGFQSNNSTFLVPNGQGTSRLELNFSQPLLRDRGRAVNMTRVVLASIDVKLTEAEVRNDIEDHLVDVTRAYWELYQARAEYVQRMRLTQAAIDLHATLKGRVELDSQQRQILRAEVAITRRRSELIRIQTRIANAQSRLR 252          
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: A0A5C6EJJ0_9BACT (Outer membrane efflux protein n=2 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EJJ0_9BACT)

HSP 1 Score: 305 bits (781), Expect = 2.160e-96
Identity = 152/252 (60.32%), Postives = 195/252 (77.38%), Query Frame = 1
Query:    7 WWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            WWD  ++ PLG+A Q   VD  GLAQTA+ +SPYIR +LT+P I   D+VIADA FD L F++  + DT+DP+GS LTTG+   R+RD  F+SS G+RKK  +G   E++QRGGFQ NNSTFL PNPQGT+RLE+N +QPL++D G+AVN  RV+LA+ID QI  SEVR  +++HLVDV+ AYW LYQ+RA+WLQR RLLA+A E+  +L ARG VD+ +RQILRA+ AVA R+ADLVR ET IRNAQ++LR
Sbjct:  141 WWDPLLAGPLGIAPQTMQVDVGGLAQTAIASSPYIRGILTQPHIRQNDLVIADANFDTLAFVEGKFADTSDPIGSLLTTGNAFGRYRDQTFSSSMGLRKKGHAGTQFELIQRGGFQDNNSTFLVPNPQGTTRLEVNVTQPLMKDRGRAVNDIRVLLARIDVQIATSEVRSSLESHLVDVSAAYWNLYQSRAQWLQRSRLLANASELSEILRARGEVDAFKRQILRADAAVASRRADLVRSETEIRNAQAQLR 392          
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: M5RPU7_9BACT (Outer membrane efflux protein n=1 Tax=Rhodopirellula maiorica SM1 TaxID=1265738 RepID=M5RPU7_9BACT)

HSP 1 Score: 301 bits (771), Expect = 9.380e-96
Identity = 148/253 (58.50%), Postives = 196/253 (77.47%), Query Frame = 1
Query:    4 VWWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            +WW+  VS+ +GLAE   AVD   L + AL++SPYI+++LTEPQI  T+I IADA+FD L+F+++ + DTNDPVGS LTTGD SDRFRD   + +AG+R+K  SGG  E+ Q+ G+Q+NNSTFLTPNPQGT+RLE +F+QPL++D G   N+TR++LA+++    N+EVR  ++ HLVDV  AYW+L+QARA+WLQR RLL SA  +  VL +R  VDS QRQILRA VAVA R++DL+R E RIRNAQS+LR
Sbjct:   51 MWWETPVSQTIGLAENTMAVDIHSLIEMALVSSPYIQAILTEPQIQRTEITIADAEFDSLSFVESKFVDTNDPVGSRLTTGDNSDRFRDETLSGAAGLRRKTRSGGQFEMSQQAGYQANNSTFLTPNPQGTTRLEFSFTQPLMKDRGTTFNQTRILLARLEVGEINAEVRANLENHLVDVARAYWDLFQARADWLQRSRLLESANHLYQVLLSRKGVDSHQRQILRAGVAVAGRRSDLIRAEARIRNAQSRLR 303          
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: A0A5B1C8X5_9BACT (Toluene efflux pump outer membrane protein TtgI n=2 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1C8X5_9BACT)

HSP 1 Score: 302 bits (773), Expect = 1.660e-95
Identity = 146/252 (57.94%), Postives = 190/252 (75.40%), Query Frame = 1
Query:    7 WWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            WW+  VS PLG A    +VD +GL Q+AL  SP ++ +LTEP+I   D+VI +A FD   F++  + DTN+PVGS LTTGD S+RFRD  F+S+AGVR+   SGG  E+ QRGGFQ NNSTFL PNPQGT+RLE+NF+QPL+R+ G+AVN TR++LA+ID ++  +EVR E++ HL+DVT AYW LYQAR +WLQ+ RL  +A ++  VL AR  VDS  RQ+LRA  AVA RQ+DLVR ETRIRN+Q++LR
Sbjct:  127 WWETGVSAPLGFASATNSVDVAGLTQSALSMSPLVKGVLTEPKIRQNDLVIENAAFDSTAFVEGKFADTNEPVGSALTTGDNSERFRDETFSSAAGVRRSARSGGTFELAQRGGFQENNSTFLIPNPQGTTRLEINFTQPLMRNRGRAVNETRIVLAQIDLKLAEAEVRSELEDHLIDVTRAYWSLYQARTQWLQQDRLYENATKLLEVLKARNGVDSHTRQVLRAQAAVASRQSDLVRTETRIRNSQARLR 378          
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Match: A0A7Y2AJ99_9BACT (TolC family protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2AJ99_9BACT)

HSP 1 Score: 300 bits (767), Expect = 2.040e-93
Identity = 150/253 (59.29%), Postives = 193/253 (76.28%), Query Frame = 1
Query:    4 VWWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTDIVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVRKKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKAVNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQRLLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQSKLR 762
            +WW   +   LGL+ Q   VD   L +TAL +SPY+RS+LT+  I  +DIVIADA+FDP  FL+  +TDT++PVGS LTTG+ +D FRD  F ++ GVRKK  +GG  E+ QRGGFQSNNS FL PNPQGT+RLE NF+QPL+RD G AVN  RV+LA++D QI+N+ VR +++THLVDVT AYW+LYQARA+WLQRQRL+A A  +  VL AR  VDSQ+RQILRA  A+  R+++LVR  TRIR+AQ++LR
Sbjct:  208 MWWSLPMQNSLGLSPQTLPVDIGTLTETALASSPYVRSILTKSHIRHSDIVIADAEFDPKVFLEGKFTDTSEPVGSTLTTGNANDTFRDETFTATGGVRKKTRNGGKWELYQRGGFQSNNSQFLDPNPQGTTRLEFNFTQPLMRDRGAAVNNVRVLLAQLDLQISNASVRTDLETHLVDVTRAYWDLYQARADWLQRQRLVAGAERLTKVLEARDGVDSQKRQILRARAALTSRRSELVRSVTRIRDAQARLR 460          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92329.21369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J1B4I7_RHOIS5.730e-16599.21Transport facilitation n=1 Tax=Rhodopirellula isla... [more]
Q7UZ70_RHOBA2.590e-15894.88Probable outer membrane channel protein n=9 Tax=Rh... [more]
UPI001E35E45B2.340e-14890.12TolC family protein n=2 Tax=unclassified Rhodopire... [more]
M5SZ00_9BACT2.340e-10866.80Outer membrane efflux protein n=3 Tax=Rhodopirellu... [more]
M5U234_9BACT2.500e-10763.89Outer membrane efflux protein n=2 Tax=Rhodopirellu... [more]
A0A5C6AV40_9BACT9.620e-10263.24Outer membrane efflux protein n=2 Tax=Rhodopirellu... [more]
A0A5C6EJJ0_9BACT2.160e-9660.32Outer membrane efflux protein n=2 Tax=Rubripirellu... [more]
M5RPU7_9BACT9.380e-9658.50Outer membrane efflux protein n=1 Tax=Rhodopirellu... [more]
A0A5B1C8X5_9BACT1.660e-9557.94Toluene efflux pump outer membrane protein TtgI n=... [more]
A0A7Y2AJ99_9BACT2.040e-9359.29TolC family protein n=1 Tax=Pirellulaceae bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92329contigM-pyrifera_M_contig92329:2..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score467.2
Seed ortholog evalue4.8e-129
Seed eggNOG ortholog243090.RB149
Preferred nametolC
KEGG koko:K12340
KEGG TC1.B.17,2.A.6.2
KEGG Pathwayko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133
KEGG ModuleM00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Outer membrane efflux protein
EggNOG OGs2J2W4@203682,COG1538@1,COG1538@2
COG Functional cat.MU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01504,ko02000,ko02044
Exons1
Model size762
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.4413362-CDS-M-pyrifera_M_contig92329:1..7631622816836.4413362-CDS-M-pyrifera_M_contig92329:1..763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92329 2..763 -
1692278207.177393-CDS-M-pyrifera_M_contig92329:1..7631692278207.177393-CDS-M-pyrifera_M_contig92329:1..763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92329 2..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92329.21369.1prot_M-pyrifera_M_contig92329.21369.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92329 2..763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92329.21369.1

>prot_M-pyrifera_M_contig92329.21369.1 ID=prot_M-pyrifera_M_contig92329.21369.1|Name=mRNA_M-pyrifera_M_contig92329.21369.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
VVWWDADVSRPLGLAEQHTAVDASGLAQTALIASPYIRSLLTEPQISMTD
IVIADAQFDPLTFLDANYTDTNDPVGSELTTGDQSDRFRDNLFASSAGVR
KKLTSGGNLEVVQRGGFQSNNSTFLTPNPQGTSRLELNFSQPLLRDHGKA
VNRTRVILAKIDAQITNSEVREEIQTHLVDVTTAYWELYQARAEWLQRQR
LLASAVEMQSVLNARGAVDSQQRQILRANVAVAKRQADLVRIETRIRNAQ
SKLR
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mRNA from alignment at M-pyrifera_M_contig92329:2..763-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92329.21369.1 ID=mRNA_M-pyrifera_M_contig92329.21369.1|Name=mRNA_M-pyrifera_M_contig92329.21369.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig92329:2..763- (Macrocystis pyrifera P11B4 male)
GTCGTGTGGTGGGACGCTGACGTCTCGCGGCCGCTGGGGTTGGCTGAGCA ACACACCGCAGTCGATGCGTCGGGTTTGGCCCAGACGGCTCTGATTGCCT CTCCGTACATCCGCAGCCTGCTGACCGAACCCCAGATCTCGATGACGGAC ATCGTGATCGCTGACGCCCAGTTTGACCCCCTGACTTTTCTGGATGCGAA CTACACCGACACGAACGATCCGGTCGGCAGCGAACTGACGACGGGGGACC AATCCGATCGTTTTCGTGACAATCTGTTTGCTTCTTCGGCCGGTGTTCGC AAAAAGCTGACCAGCGGCGGGAATCTGGAAGTGGTGCAGCGTGGTGGCTT TCAAAGCAATAACTCCACCTTCCTGACACCCAACCCGCAAGGCACCTCGC GGTTGGAGTTGAACTTCTCGCAACCGCTGCTTCGGGATCATGGAAAAGCC GTCAATCGGACTCGCGTGATCCTGGCCAAGATCGATGCGCAGATCACCAA CAGCGAAGTGCGTGAAGAAATCCAGACGCACCTCGTCGATGTGACCACTG CGTACTGGGAACTTTACCAAGCCCGTGCCGAATGGTTGCAACGCCAACGC CTGTTGGCCAGTGCAGTGGAGATGCAATCGGTACTCAATGCTCGCGGCGC GGTCGATTCTCAACAGCGGCAAATCTTGCGTGCCAATGTTGCGGTGGCGA AACGTCAGGCGGATTTGGTCCGCATCGAAACTCGGATTCGCAACGCGCAG TCCAAGTTGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92329:2..763-

>mRNA_M-pyrifera_M_contig92329.21369.1 ID=mRNA_M-pyrifera_M_contig92329.21369.1|Name=mRNA_M-pyrifera_M_contig92329.21369.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig92329:2..763- (Macrocystis pyrifera P11B4 male)
GTCGTGTGGTGGGACGCTGACGTCTCGCGGCCGCTGGGGTTGGCTGAGCA
ACACACCGCAGTCGATGCGTCGGGTTTGGCCCAGACGGCTCTGATTGCCT
CTCCGTACATCCGCAGCCTGCTGACCGAACCCCAGATCTCGATGACGGAC
ATCGTGATCGCTGACGCCCAGTTTGACCCCCTGACTTTTCTGGATGCGAA
CTACACCGACACGAACGATCCGGTCGGCAGCGAACTGACGACGGGGGACC
AATCCGATCGTTTTCGTGACAATCTGTTTGCTTCTTCGGCCGGTGTTCGC
AAAAAGCTGACCAGCGGCGGGAATCTGGAAGTGGTGCAGCGTGGTGGCTT
TCAAAGCAATAACTCCACCTTCCTGACACCCAACCCGCAAGGCACCTCGC
GGTTGGAGTTGAACTTCTCGCAACCGCTGCTTCGGGATCATGGAAAAGCC
GTCAATCGGACTCGCGTGATCCTGGCCAAGATCGATGCGCAGATCACCAA
CAGCGAAGTGCGTGAAGAAATCCAGACGCACCTCGTCGATGTGACCACTG
CGTACTGGGAACTTTACCAAGCCCGTGCCGAATGGTTGCAACGCCAACGC
CTGTTGGCCAGTGCAGTGGAGATGCAATCGGTACTCAATGCTCGCGGCGC
GGTCGATTCTCAACAGCGGCAAATCTTGCGTGCCAATGTTGCGGTGGCGA
AACGTCAGGCGGATTTGGTCCGCATCGAAACTCGGATTCGCAACGCGCAG
TCCAAGTTGCGAGTCGTGTGGTGGGACGCTGACGTCTCGCGGCCGCTGGG
GTTGGCTGAGCAACACACCGCAGTCGATGCGTCGGGTTTGGCCCAGACGG
CTCTGATTGCCTCTCCGTACATCCGCAGCCTGCTGACCGAACCCCAGATC
TCGATGACGGACATCGTGATCGCTGACGCCCAGTTTGACCCCCTGACTTT
TCTGGATGCGAACTACACCGACACGAACGATCCGGTCGGCAGCGAACTGA
CGACGGGGGACCAATCCGATCGTTTTCGTGACAATCTGTTTGCTTCTTCG
GCCGGTGTTCGCAAAAAGCTGACCAGCGGCGGGAATCTGGAAGTGGTGCA
GCGTGGTGGCTTTCAAAGCAATAACTCCACCTTCCTGACACCCAACCCGC
AAGGCACCTCGCGGTTGGAGTTGAACTTCTCGCAACCGCTGCTTCGGGAT
CATGGAAAAGCCGTCAATCGGACTCGCGTGATCCTGGCCAAGATCGATGC
GCAGATCACCAACAGCGAAGTGCGTGAAGAAATCCAGACGCACCTCGTCG
ATGTGACCACTGCGTACTGGGAACTTTACCAAGCCCGTGCCGAATGGTTG
CAACGCCAACGCCTGTTGGCCAGTGCAGTGGAGATGCAATCGGTACTCAA
TGCTCGCGGCGCGGTCGATTCTCAACAGCGGCAAATCTTGCGTGCCAATG
TTGCGGTGGCGAAACGTCAGGCGGATTTGGTCCGCATCGAAACTCGGATT
CGCAACGCGCAGTCCAAGTTGCGA
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