mRNA_M-pyrifera_M_contig92323.21368.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig92323.21368.1
Unique Name	mRNA_M-pyrifera_M_contig92323.21368.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: A0A1V9Y7R9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7R9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.640e-8
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1

Query:    1 MMHKSRSYAKPSSLTHRALLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            M  K+ + A  SS   + LLTDR AY+SFLE QLERVSAACL T +L  QL D+       EA++
Sbjct:   11 MRSKAMANASNSSHETKKLLTDRGAYISFLEIQLERVSAACLHTKSLEAQLHDVHVAVEAAEAKI 75

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BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: A0A6G0W9G1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9G1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.030e-8
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1

Query:   55 LLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            LLTDR AY+SFLE QLERVSAACL T +L  Q++D+  +   T+A++
Sbjct:   32 LLTDRGAYISFLEIQLERVSAACLHTQSLESQIQDMHVQLEATDAKI 78

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BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: A0A485LD97_9STRA (Aste57867_19404 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LD97_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.880e-8
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1

Query:   10 KSRSYAKPSSLTHRA------LLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            +S++ AK S+   +A      LLTDR AY+SFLE QLERVSAACL T +L  Q+ D+  +   T+A++
Sbjct:    2 RSKALAKASTSGKQAVEDTKKLLTDRGAYISFLEIQLERVSAACLHTQSLESQIHDMHVQLEATDAKI 69

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BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: A0A418AXK6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AXK6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.750e-7
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1

Query:   55 LLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            LLTDR AY+SFLE QLERVSAACL T +L  Q+ D+  +   T+A++
Sbjct:   48 LLTDRGAYISFLEIQLERVSAACLHTKSLETQIHDMHVQIEATDAKV 94

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BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: A0A024UH03_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UH03_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.770e-7
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1

Query:   55 LLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            LLTDR AY+SFLE QLERVSAACL T +L  Q+ D+  +   T+A++
Sbjct:  147 LLTDRGAYISFLEIQLERVSAACLHTKSLETQIHDMHVQIEATDAKV 193

[Close]

BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: A0A024UG29_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG29_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.770e-7
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1

Query:   55 LLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            LLTDR AY+SFLE QLERVSAACL T +L  Q+ D+  +   T+A++
Sbjct:  147 LLTDRGAYISFLEIQLERVSAACLHTKSLETQIHDMHVQIEATDAKV 193

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BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: A0A3R7AQM3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AQM3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.250e-7
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1

Query:   10 KSRSYAKPSSLTH-----RALLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            +S++ AK SS        + LLTDR AY+SFLE QLERVSAACL T +L  Q+ D+  +   T+ ++
Sbjct:   12 RSKALAKASSGKQAVEETKKLLTDRGAYISFLEIQLERVSAACLHTKSLESQIHDMHVQIEATDGKV 78

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BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: A0A397AYW2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AYW2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.260e-7
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1

Query:   10 KSRSYAKPSSLTH-----RALLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            +S++ AK SS        + LLTDR AY+SFLE QLERVSAACL T +L  Q+ D+  +   T+ ++
Sbjct:   12 RSKALAKASSGKQAVEETKKLLTDRGAYISFLEIQLERVSAACLHTKSLESQIHDMHVQIEATDGKV 78

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BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: W4GGN0_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGN0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.290e-7
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1

Query:   10 KSRSYAKPSSLTH-----RALLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            +S++ AK SS        + LLTDR AY+SFLE QLERVSAACL T +L  Q+ D+  +   T+ ++
Sbjct:   12 RSKALAKASSGKQAVEETKKLLTDRGAYISFLEIQLERVSAACLHTKSLESQIHDMHVQIEATDGKV 78

[Close]

BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Match: A0A3R7A532_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A532_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.340e-7
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1

Query:   10 KSRSYAKPSSLTH-----RALLTDRNAYLSFLEAQLERVSAACLQTDALHHQLEDLRRRFSGTEAQM 195
            +S++ AK SS        + LLTDR AY+SFLE QLERVSAACL T +L  Q+ D+  +   T+ ++
Sbjct:   12 RSKALAKASSGKQAVEETKKLLTDRGAYISFLEIQLERVSAACLHTKSLESQIHDMHVQIEATDGKV 78

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig92323.21368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1V9Y7R9_9STRA	3.640e-8	50.77	Uncharacterized protein n=1 Tax=Thraustotheca clav...	[more]
A0A6G0W9G1_9STRA	5.030e-8	57.45	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A485LD97_9STRA	6.880e-8	47.06	Aste57867_19404 protein n=1 Tax=Aphanomyces stella...	[more]
A0A418AXK6_9STRA	1.750e-7	57.45	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A024UH03_9STRA	1.770e-7	57.45	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A024UG29_9STRA	1.770e-7	57.45	Uncharacterized protein n=2 Tax=Aphanomyces invada...	[more]
A0A3R7AQM3_9STRA	3.250e-7	46.27	Uncharacterized protein (Fragment) n=1 Tax=Aphanom...	[more]
A0A397AYW2_9STRA	3.260e-7	46.27	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]
W4GGN0_9STRA	3.290e-7	46.27	Uncharacterized protein n=9 Tax=Aphanomyces astaci...	[more]
A0A3R7A532_9STRA	3.340e-7	46.27	Uncharacterized protein (Fragment) n=1 Tax=Aphanom...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig92323	contig	M-pyrifera_M_contig92323:141..335 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	195
Cds size	195
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816836.4102223-CDS-M-pyrifera_M_contig92323:140..335	1622816836.4102223-CDS-M-pyrifera_M_contig92323:140..335	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig92323 141..335 +
1692278207.1609476-CDS-M-pyrifera_M_contig92323:140..335	1692278207.1609476-CDS-M-pyrifera_M_contig92323:140..335	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig92323 141..335 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig92323.21368.1	prot_M-pyrifera_M_contig92323.21368.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig92323 141..335 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig92323:141..335+
coding sequence from alignment at M-pyrifera_M_contig92323:141..335+

protein sequence of mRNA_M-pyrifera_M_contig92323.21368.1

>prot_M-pyrifera_M_contig92323.21368.1 ID=prot_M-pyrifera_M_contig92323.21368.1|Name=mRNA_M-pyrifera_M_contig92323.21368.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MMHKSRSYAKPSSLTHRALLTDRNAYLSFLEAQLERVSAACLQTDALHHQ
LEDLRRRFSGTEAQM

mRNA from alignment at M-pyrifera_M_contig92323:141..335+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig92323.21368.1 ID=mRNA_M-pyrifera_M_contig92323.21368.1|Name=mRNA_M-pyrifera_M_contig92323.21368.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig92323:141..335+ (Macrocystis pyrifera P11B4 male)
ATGATGCATAAATCAAGGTCATATGCTAAACCATCATCTCTTACACATCG
TGCACTTCTTACTGATCGCAATGCGTACCTCTCCTTCTTGGAAGCGCAAC
TAGAAAGAGTATCAGCGGCTTGTTTGCAAACAGATGCATTGCATCATCAA
TTGGAGGACCTTCGACGTAGGTTTAGTGGAACAGAGGCGCAAATG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig92323:141..335+

>mRNA_M-pyrifera_M_contig92323.21368.1 ID=mRNA_M-pyrifera_M_contig92323.21368.1|Name=mRNA_M-pyrifera_M_contig92323.21368.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig92323:141..335+ (Macrocystis pyrifera P11B4 male)
ATGATGCATAAATCAAGGTCATATGCTAAACCATCATCTCTTACACATCG
TGCACTTCTTACTGATCGCAATGCGTACCTCTCCTTCTTGGAAGCGCAAC
TAGAAAGAGTATCAGCGGCTTGTTTGCAAACAGATGCATTGCATCATCAA
TTGGAGGACCTTCGACGTAGGTTTAGTGGAACAGAGGCGCAAATGATGAT
GCATAAATCAAGGTCATATGCTAAACCATCATCTCTTACACATCGTGCAC
TTCTTACTGATCGCAATGCGTACCTCTCCTTCTTGGAAGCGCAACTAGAA
AGAGTATCAGCGGCTTGTTTGCAAACAGATGCATTGCATCATCAATTGGA
GGACCTTCGACGTAGGTTTAGTGGAACAGAGGCGCAAATG