mRNA_M-pyrifera_M_contig92320.21366.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92320.21366.1
Unique NamemRNA_M-pyrifera_M_contig92320.21366.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92320.21366.1 vs. uniprot
Match: A0A482R372_9EURY (FAT domain-containing protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R372_9EURY)

HSP 1 Score: 66.6 bits (161), Expect = 1.790e-11
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 LEAGVLRSLQNAGHVGTALRRARAVLVQRSELAPSVVPEAAEAAWRLGRWDTLEEV 168
            L AG+LR LQN GH+ T L RA  VL +  EL+P+V P A EAAWRLG+W  LEE+
Sbjct:   63 LHAGLLRCLQNVGHLETVLNRAVGVLGRSPELSPAVTPYAVEAAWRLGQWQPLEEL 118
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BLAST of mRNA_M-pyrifera_M_contig92320.21366.1 vs. uniprot
Match: A0A1W0ACG2_9STRA (Phosphatidylinositol kinase (PIK-L4) (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACG2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.210e-6
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 LEAGVLRSLQNAGHVGTALRRARAVLVQRSELAPSVVPEAAEAAWRLGRWDTLEEV 168
            L AGV+R +   G +  AL+  R ++V+  ++ PSV P A E AWRL RW+ L+E+
Sbjct:  811 LYAGVIRCMVQLGRLEGALQHVRGIVVESPDVIPSVYPFALECAWRLSRWNLLQEL 866
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BLAST of mRNA_M-pyrifera_M_contig92320.21366.1 vs. uniprot
Match: A0A4P9ZUR1_9FUNG (Non-specific serine/threonine protein kinase n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZUR1_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 7.170e-6
Identity = 23/55 (41.82%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    4 EAGVLRSLQNAGHVGTALRRARAVLVQRSELAPSVVPEAAEAAWRLGRWDTLEEV 168
            + G  R L+N GH+ + L   R +L +  +    + P AAEAAWRLG+WD LE++
Sbjct:  870 QLGFARCLKNMGHLESLLTHIRGLLAEHEDWQTELQPLAAEAAWRLGKWDALEDL 924
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BLAST of mRNA_M-pyrifera_M_contig92320.21366.1 vs. uniprot
Match: A0A7S0IKX3_MICPS (Serine/threonine-protein kinase ATR n=3 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IKX3_MICPS)

HSP 1 Score: 49.3 bits (116), Expect = 2.520e-5
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    4 EAGVLRSLQNAGHVGTALRRARAVLVQRSELAPSVVPEAAEAAWRLGRWDTLE 162
            E G LR LQ  GH+    R A A++ QR   +  +    A AAWRLGRWD+LE
Sbjct: 1838 EWGRLRCLQGLGHLRALEREANALIAQRPAASAELAEAGAAAAWRLGRWDSLE 1890
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92320.21366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A482R372_9EURY1.790e-1158.93FAT domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A1W0ACG2_9STRA5.210e-642.86Phosphatidylinositol kinase (PIK-L4) (Fragment) n=... [more]
A0A4P9ZUR1_9FUNG7.170e-641.82Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S0IKX3_MICPS2.520e-547.17Serine/threonine-protein kinase ATR n=3 Tax=Microm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92320contigM-pyrifera_M_contig92320:252..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.3256314-CDS-M-pyrifera_M_contig92320:251..4191622816836.3256314-CDS-M-pyrifera_M_contig92320:251..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92320 252..419 +
1692278207.1059422-CDS-M-pyrifera_M_contig92320:251..4191692278207.1059422-CDS-M-pyrifera_M_contig92320:251..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92320 252..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92320.21366.1prot_M-pyrifera_M_contig92320.21366.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92320 252..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92320.21366.1

>prot_M-pyrifera_M_contig92320.21366.1 ID=prot_M-pyrifera_M_contig92320.21366.1|Name=mRNA_M-pyrifera_M_contig92320.21366.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
LEAGVLRSLQNAGHVGTALRRARAVLVQRSELAPSVVPEAAEAAWRLGRW
DTLEEV
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mRNA from alignment at M-pyrifera_M_contig92320:252..419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92320.21366.1 ID=mRNA_M-pyrifera_M_contig92320.21366.1|Name=mRNA_M-pyrifera_M_contig92320.21366.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig92320:252..419+ (Macrocystis pyrifera P11B4 male)
TTAGAAGCTGGTGTGTTGCGAAGTCTTCAAAATGCTGGTCATGTTGGAAC
AGCATTACGAAGAGCACGTGCTGTGCTTGTACAACGATCTGAATTAGCAC
CGAGTGTTGTTCCAGAAGCTGCAGAGGCTGCGTGGAGGTTAGGGAGATGG
GATACATTGGAAGAAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92320:252..419+

>mRNA_M-pyrifera_M_contig92320.21366.1 ID=mRNA_M-pyrifera_M_contig92320.21366.1|Name=mRNA_M-pyrifera_M_contig92320.21366.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig92320:252..419+ (Macrocystis pyrifera P11B4 male)
TTAGAAGCTGGTGTGTTGCGAAGTCTTCAAAATGCTGGTCATGTTGGAAC
AGCATTACGAAGAGCACGTGCTGTGCTTGTACAACGATCTGAATTAGCAC
CGAGTGTTGTTCCAGAAGCTGCAGAGGCTGCGTGGAGGTTAGGGAGATGG
GATACATTGGAAGAAGTGTTAGAAGCTGGTGTGTTGCGAAGTCTTCAAAA
TGCTGGTCATGTTGGAACAGCATTACGAAGAGCACGTGCTGTGCTTGTAC
AACGATCTGAATTAGCACCGAGTGTTGTTCCAGAAGCTGCAGAGGCTGCG
TGGAGGTTAGGGAGATGGGATACATTGGAAGAAGTG
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