mRNA_M-pyrifera_M_contig92310.21362.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92310.21362.1
Unique NamemRNA_M-pyrifera_M_contig92310.21362.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92310.21362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92310contigM-pyrifera_M_contig92310:72..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.1063375-CDS-M-pyrifera_M_contig92310:71..5541622816836.1063375-CDS-M-pyrifera_M_contig92310:71..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92310 72..554 -
1692278206.964198-CDS-M-pyrifera_M_contig92310:71..5541692278206.964198-CDS-M-pyrifera_M_contig92310:71..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92310 72..554 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.1189167-UTR-M-pyrifera_M_contig92310:554..5571622816836.1189167-UTR-M-pyrifera_M_contig92310:554..557Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92310 555..557 -
1692278206.9781911-UTR-M-pyrifera_M_contig92310:554..5571692278206.9781911-UTR-M-pyrifera_M_contig92310:554..557Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92310 555..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92310.21362.1prot_M-pyrifera_M_contig92310.21362.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92310 72..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92310.21362.1

>prot_M-pyrifera_M_contig92310.21362.1 ID=prot_M-pyrifera_M_contig92310.21362.1|Name=mRNA_M-pyrifera_M_contig92310.21362.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MMDAGGPEALLEAVQTSEQQELRGSAVWALVNMTQTSPYAEEIRSQLSAK
GAVGVLVGLLTNARQTSDTEKHLEALKALSNIALSAPAEDVDANAVARDL
IALVKESLSGEASVATGAVSALVNLSKKSDAFRMALRENGGLELVADELL
THTGNEGLAQM
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mRNA from alignment at M-pyrifera_M_contig92310:72..557-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92310.21362.1 ID=mRNA_M-pyrifera_M_contig92310.21362.1|Name=mRNA_M-pyrifera_M_contig92310.21362.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig92310:72..557- (Macrocystis pyrifera P11B4 male)
CAGATGATGGATGCCGGTGGGCCGGAGGCACTCCTCGAAGCAGTGCAGAC
ATCAGAGCAGCAGGAGTTGAGGGGCTCTGCGGTGTGGGCACTGGTCAACA
TGACACAGACGAGTCCTTATGCAGAGGAGATCAGGAGCCAACTCAGCGCC
AAGGGTGCAGTTGGAGTGCTGGTAGGCCTCCTCACCAATGCACGACAGAC
TAGTGACACTGAGAAACACTTGGAGGCTCTGAAAGCACTCAGCAACATTG
CTCTCTCTGCGCCTGCTGAGGACGTGGATGCCAACGCAGTCGCTCGTGAC
CTCATTGCCCTTGTCAAGGAGAGCCTCTCGGGCGAAGCCAGTGTGGCCAC
TGGCGCCGTTTCAGCTCTCGTGAACCTCTCGAAGAAGAGCGACGCGTTCA
GAATGGCCCTGAGGGAGAACGGTGGCCTTGAGTTGGTGGCAGACGAACTT
CTGACACACACGGGCAATGAGGGACTGGCGCAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92310:72..557-

>mRNA_M-pyrifera_M_contig92310.21362.1 ID=mRNA_M-pyrifera_M_contig92310.21362.1|Name=mRNA_M-pyrifera_M_contig92310.21362.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig92310:72..557- (Macrocystis pyrifera P11B4 male)
ATGATGGATGCCGGTGGGCCGGAGGCACTCCTCGAAGCAGTGCAGACATC
AGAGCAGCAGGAGTTGAGGGGCTCTGCGGTGTGGGCACTGGTCAACATGA
CACAGACGAGTCCTTATGCAGAGGAGATCAGGAGCCAACTCAGCGCCAAG
GGTGCAGTTGGAGTGCTGGTAGGCCTCCTCACCAATGCACGACAGACTAG
TGACACTGAGAAACACTTGGAGGCTCTGAAAGCACTCAGCAACATTGCTC
TCTCTGCGCCTGCTGAGGACGTGGATGCCAACGCAGTCGCTCGTGACCTC
ATTGCCCTTGTCAAGGAGAGCCTCTCGGGCGAAGCCAGTGTGGCCACTGG
CGCCGTTTCAGCTCTCGTGAACCTCTCGAAGAAGAGCGACGCGTTCAGAA
TGGCCCTGAGGGAGAACGGTGGCCTTGAGTTGGTGGCAGACGAACTTCTG
ACACACACGGGCAATGAGGGACTGGCGCAGATGATGATGGATGCCGGTGG
GCCGGAGGCACTCCTCGAAGCAGTGCAGACATCAGAGCAGCAGGAGTTGA
GGGGCTCTGCGGTGTGGGCACTGGTCAACATGACACAGACGAGTCCTTAT
GCAGAGGAGATCAGGAGCCAACTCAGCGCCAAGGGTGCAGTTGGAGTGCT
GGTAGGCCTCCTCACCAATGCACGACAGACTAGTGACACTGAGAAACACT
TGGAGGCTCTGAAAGCACTCAGCAACATTGCTCTCTCTGCGCCTGCTGAG
GACGTGGATGCCAACGCAGTCGCTCGTGACCTCATTGCCCTTGTCAAGGA
GAGCCTCTCGGGCGAAGCCAGTGTGGCCACTGGCGCCGTTTCAGCTCTCG
TGAACCTCTCGAAGAAGAGCGACGCGTTCAGAATGGCCCTGAGGGAGAAC
GGTGGCCTTGAGTTGGTGGCAGACGAACTTCTGACACACACGGGCAATGA
GGGACTGGCGCAGATG
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