mRNA_M-pyrifera_M_contig92236.21352.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92236.21352.1
Unique NamemRNA_M-pyrifera_M_contig92236.21352.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: A0A5A8ENQ4_CAFRO (UBA_e1_C domain-containing protein n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8ENQ4_CAFRO)

HSP 1 Score: 191 bits (486), Expect = 3.310e-52
Identity = 102/212 (48.11%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   97 LEAIERLKAELVTLGDEAKGVNVEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKVLQDLPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKLSEVHHGVTVDMISI---GES-IIYWPSFHASHKEREDTPLAALIAE 720
            +EA ++L++   +   E   + +  A FEKD+D+N H+ ++  +SNLRASNY+I T      KIIAGK+IPA+ATTTCAVTGLV IE+LK  +   +EA+RNTF+NLA+N++AMSEPMPPKK  S E+DP+  GPL+A PEGFTPWDR+ ID    +TV E  + ++     V +D++S+   GE+ ++Y P F  SH+ RE  P+  +  E
Sbjct:  833 VEAADKLRSIAASKAAELAALKLAAADFEKDDDTNHHIDFIAAASNLRASNYRIPTVPRHRVKIIAGKIIPAIATTTCAVTGLVGIEILKTFRVPKIEAFRNTFLNLAINMYAMSEPMPPKKTVSKEYDPVTMGPLRAQPEGFTPWDRIEIDGSEAMTVAELRDNIA-ASQKVDIDILSVTVNGETKMMYAPLFAPSHRARETRPVVDVCRE 1043          
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: A0A7S0ZS45_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZS45_NOCSC)

HSP 1 Score: 171 bits (433), Expect = 4.410e-45
Identity = 98/209 (46.89%), Postives = 138/209 (66.03%), Query Frame = 1
Query:   91 DDLEAIERLKAELVTLGDEAKGVNVEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKV--LQDLPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKLSEVHHGVTVDMISIGESIIYWPSFHASHKEREDTPLAAL 711
            DD E + +L  EL   G  A   N+ PA FEKD+DSNFHV +M  ++NLRA NYKI  A     K+IAGK+IPA+ATTT  V GLV  E+LKV  L+   +E ++N F+NLA+ ++ +SEPMPP K  S +FDPI+ GP+KA PEGFT WD+V+++   D T+K+F + LS+    V + +IS G + +Y  ++  +HK+R  T L  +
Sbjct:  805 DDEETVRQLVKELSQTGGTAASANLSPAAFEKDDDSNFHVDFMYAAANLRAQNYKIPEAEKHRVKMIAGKIIPAIATTTAMVMGLVTAELLKVVTLKSRKLEEFKNGFVNLALPLWLLSEPMPPAKTVSKDFDPIIQGPVKAKPEGFTSWDKVVVNIP-DGTLKQFVDHLSD-EQNVEIMIISAGNACLY-NAYLPAHKKRLQTKLTKV 1010          
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: A0A7J6SKF4_PEROL (UBA_e1_C domain-containing protein n=6 Tax=Perkinsus TaxID=28000 RepID=A0A7J6SKF4_PEROL)

HSP 1 Score: 169 bits (428), Expect = 2.060e-44
Identity = 96/219 (43.84%), Postives = 145/219 (66.21%), Query Frame = 1
Query:   91 DDLEAIERLKAELVTLGDEAKG---VNVEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKVLQD----LPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKLSEVHHGVTVDMISIGESIIYWPSFHASHKEREDTPLAALIAEHT 726
            DD EA++ L  ++ T+  E +      + PA FEKD+D+NFH+ ++  S+NLRA NYKI  A   + K+IAGK+IPA+ATTT  VTG+V+ E+LKVL D      +E Y+N+F+NLA+  + +SEP+PP K  S E+DPI  GP++A PEGFTPW +++I+ G + T+KE  + L++    V V ++S G + +Y  +F  +HK+R D  + AL  + T
Sbjct:  787 DDEEAVQTLANQMRTIDPELRENLQKRITPAEFEKDDDTNFHIDFIAASANLRARNYKINEADRNKVKMIAGKIIPAIATTTAMVTGMVSCELLKVLMDEGKKYDIERYKNSFVNLALPTWILSEPLPPVKTVSKEYDPIAMGPVRAKPEGFTPWMKLVINHGPEGTLKELVDWLAK-EQNVEVMILSSGNACLY-NAFLPAHKKRLDQRMPALYEQIT 1003          
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: A0A7J6L7B6_PEROL (UBA_e1_C domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6L7B6_PEROL)

HSP 1 Score: 166 bits (421), Expect = 1.840e-43
Identity = 94/219 (42.92%), Postives = 143/219 (65.30%), Query Frame = 1
Query:   91 DDLEAIERLKAELVTLGDEAKG---VNVEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKVLQD----LPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKLSEVHHGVTVDMISIGESIIYWPSFHASHKEREDTPLAALIAEHT 726
            DD EA++ L  ++ T+  E +      + PA FEKD+D+NFH+ ++  S+NLRA NYKI  A   + K+IAGK+IPA+ATTT  VTG+V+ E+LKVL D      +E Y+N+F+NLA+  + +SEP+PP K  S E+DPI  GP++A PEGFTPW ++ I+ G + T++E  + L++    V V ++S G + +Y  +F  +HK+R D  +  L  + T
Sbjct:  284 DDEEAVQTLADQMRTIDPELRENLQKRISPAEFEKDDDTNFHIDFIASSANLRARNYKINEADRNKVKMIAGKIIPAIATTTAMVTGMVSCELLKVLMDEGKKYDIERYKNSFVNLALPTWILSEPLPPVKTVSKEYDPIAMGPVRAKPEGFTPWMKLAINHGPERTLRELVDWLAK-EQNVEVMILSSGNACLY-NAFLPAHKKRLDQRMPELYEQIT 500          
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: A0A7S2IE93_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IE93_9DINO)

HSP 1 Score: 157 bits (396), Expect = 1.850e-43
Identity = 91/211 (43.13%), Postives = 138/211 (65.40%), Query Frame = 1
Query:   91 DDLEAIERLKAELVTLGDEAKGVN-VEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKVLQD---LPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKLSEVHHGVTVDMISIGESIIYWPSFHASHKEREDTPLAAL 711
            DD EA   L  ++     + K      PA FEKD+DSNFH+++++ S+NLRA NYKI  A F + K+IAGK+IPA+ATTT   TGLV+ E+LK++     L VE ++N F+NLA+ +F MSEP+PP +  S + DP++ GP+KA PEGFT WD+V ++ G D T+++F + L +    V V ++S G + +Y  ++  +HK+R  T +  +
Sbjct:   27 DDDEAARALATKMADFHRQLKDTKQCAPADFEKDDDSNFHISFISSSANLRARNYKIPEADFHKVKMIAGKIIPAIATTTAMTTGLVSAELLKLVPQGRALKVEDFKNAFVNLALPLFLMSEPLPPLQTKSKDHDPVIQGPVKAKPEGFTTWDKVEVNLG-DATLRQFVDYLMD-EVKVEVMIMSAGNACLY-NAYLPAHKKRLGTKMTEI 234          
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: A0A1R2BXG1_9CILI (UBA_e1_C domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BXG1_9CILI)

HSP 1 Score: 162 bits (411), Expect = 3.890e-42
Identity = 88/191 (46.07%), Postives = 130/191 (68.06%), Query Frame = 1
Query:   85 GEDDLEAIERLKAELVTLGDEAKGVNVEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKVLQDLPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEK-LSEVHHGVTVDMISIGESIIY 654
            G DD + +  L  E+  +  E     + PAVFEKD+D+NFH+ ++T ++NLRA NYKI  A  Q+TK+IAGK+IPA+ATTT  + G VAIE+ K+     +E +RNTF+NL VN+  MSEP PP +  S ++DPI+ GP+KA PEGF+ W+++ I+     T+ EF +K LSE  H + V+++S G++ +Y
Sbjct:  771 GADDEQILSALLQEMKVVDREVAHKRLNPAVFEKDDDTNFHIDFITHAANLRARNYKITEADKQKTKMIAGKIIPAIATTTAMIAGAVAIELYKLHIHTDIEKFRNTFVNLGVNIIVMSEPQPPLRTKSKDYDPIVMGPIKAYPEGFSTWEKITING--PCTLGEFNQKILSE--HKLKVNIVSCGKTCLY 957          
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: C5KEK7_PERM5 (Ubiquitin-activating enzyme e1, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KEK7_PERM5)

HSP 1 Score: 161 bits (408), Expect = 9.930e-42
Identity = 87/192 (45.31%), Postives = 130/192 (67.71%), Query Frame = 1
Query:  163 VEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKVLQD----LPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKLSEVHHGVTVDMISIGESIIYWPSFHASHKEREDTPLAALIAEHT 726
            + PA FEKD+D+NFH+ ++  S+NLRA NYKI  A   + K+IAGK+IPA+ATTT  VTG+V+ E+LKVL D      +E Y+N+F+NLA+  + +SEP+PP K  S E+DPI  GP++A PEGFTPW +++I+ G + T++E  + L++      V ++S G + +Y  +F  +HK+R D  +  L  E T
Sbjct:  821 ISPAEFEKDDDTNFHIDFIAASANLRARNYKINEADRNKVKMIAGKIIPAIATTTAMVTGMVSCELLKVLMDEGNEYDIERYKNSFVNLALPTWILSEPLPPMKTVSKEYDPIAMGPVRAKPEGFTPWMKLVINHGPEGTLRELIDWLAK-EQNAEVMILSSGNACLY-NAFLPAHKKRLDQKMPELYEEIT 1010          
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: L8GHQ6_ACACA (Ubiquitinlike modifier activating enzyme 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GHQ6_ACACA)

HSP 1 Score: 160 bits (406), Expect = 1.850e-41
Identity = 100/217 (46.08%), Postives = 142/217 (65.44%), Query Frame = 1
Query:   88 EDDLEAIERLKAELVTLGDEAK------GVNVEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKVLQ--DLPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKLSEVHHGVTVDMISIGESIIYWPSFHASHKEREDTPLAALI 714
            EDD + +  L AEL  L D+AK      G   EPA FEKD+DSN+H++++T +SNLRA+NYKI+ A F +TK IAG++IPA+ATTT  +TGLV +E+ KV+Q   +P+E YRN+F+NLA+  F  SEPMP    T  + DP  A  LK  PEG+T WD  +IDEG D+T ++  + L +  H + V  +S G +++Y P F  +HK R  T ++  +
Sbjct:  807 EDDEQKVANLIAELGQL-DKAKYPVGESGRCFEPAQFEKDDDSNYHISFITQASNLRAANYKIQPADFHKTKKIAGRIIPAIATTTAMITGLVGLELYKVVQGASVPIERYRNSFVNLALPSFVQSEPMP---CTKNKSDP--AKGLKYYPEGWTLWDNFVIDEG-DITFQQLLD-LFKAKHNLEVTSVSCGTTLVYNPYF-PNHKNRLGTKISEFV 1014          
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: A0A0G4ENK7_VITBC (UBA_e1_C domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ENK7_VITBC)

HSP 1 Score: 160 bits (405), Expect = 2.510e-41
Identity = 92/214 (42.99%), Postives = 142/214 (66.36%), Query Frame = 1
Query:   91 DDLEAIERLKAELVTLGDEA--KGVNVEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKVLQ--DLPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKLSEVHHGVTVDMISIGESIIYWPSFHASHKEREDTPLAALIAE 720
            DD   I++L AEL  + DEA  K +++ P+ FEKD+D+NFH+ ++T  +NLRA NYKI  A   + K+IAGK+IPA+ATTT  VTG+V++E+ KV+   +  +E ++N F+NLA+ +F  SEP+PP K    + DPI+ GP+KA P GFTPWD+V I      T+++  + L+  HH V+V ++S+G + +Y  ++  +H+ R D  +  L  E
Sbjct:  804 DDEMVIQKLSAELSAI-DEAFKKSISLNPSEFEKDDDTNFHIDFITACANLRARNYKITEADRHKCKMIAGKIIPAIATTTAMVTGMVSLELFKVVNRAERKIEDFKNAFVNLALPLFLFSEPLPPIKTVDKDHDPIIMGPVKARPYGFTPWDKVHISISNG-TLRDLIDYLAR-HHQVSVMILSVGNACLY-NAYLPTHRNRLDKQIVRLWEE 1013          
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Match: A0A813HFP4_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HFP4_POLGL)

HSP 1 Score: 159 bits (402), Expect = 6.300e-41
Identity = 93/203 (45.81%), Postives = 141/203 (69.46%), Query Frame = 1
Query:   91 DDLEAIERLKAELVTLGDEAKG-VNVEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGKVIPALATTTCAVTGLVAIEMLKVL--QDLPVEAYRNTFMNLAVNVFAMSEPMPPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKL-SEVHHGVTVDMISIGESIIYWPSFHASHKER 687
            DD   + ++ AE+  LG + K   + E A FEKD+DSNFHV ++  ++NLRA NYKI+ A F + K++AGK+IPA+ATTT  VTGLV  E+LK++  +   VE ++N F+NLA+ ++ +SEP+PP K TS + DPI+ GP++A PEGFT WD+V +  G D T+K+F + + +EV  GV V ++S G + +Y  ++  +HK+R
Sbjct:  787 DDDVVVRQVIAEMAELGSKLKASASFEAAEFEKDDDSNFHVHFIAATANLRARNYKIQEADFHKVKMVAGKIIPAIATTTAMVTGLVTAELLKLVTRRTRKVEDFKNAFVNLALPLWLLSEPLPPLKTTSKDHDPIIMGPVRAKPEGFTTWDKVEVRLG-DATLKQFVDHMMNEV--GVEVMIMSAGNACLY-NAYLPAHKKR 985          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92236.21352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8ENQ4_CAFRO3.310e-5248.11UBA_e1_C domain-containing protein n=5 Tax=Sar Tax... [more]
A0A7S0ZS45_NOCSC4.410e-4546.89Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7J6SKF4_PEROL2.060e-4443.84UBA_e1_C domain-containing protein n=6 Tax=Perkins... [more]
A0A7J6L7B6_PEROL1.840e-4342.92UBA_e1_C domain-containing protein n=1 Tax=Perkins... [more]
A0A7S2IE93_9DINO1.850e-4343.13Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A1R2BXG1_9CILI3.890e-4246.07UBA_e1_C domain-containing protein n=2 Tax=Stentor... [more]
C5KEK7_PERM59.930e-4245.31Ubiquitin-activating enzyme e1, putative n=1 Tax=P... [more]
L8GHQ6_ACACA1.850e-4146.08Ubiquitinlike modifier activating enzyme 1, putati... [more]
A0A0G4ENK7_VITBC2.510e-4142.99UBA_e1_C domain-containing protein n=1 Tax=Vitrell... [more]
A0A813HFP4_POLGL6.300e-4145.81Hypothetical protein n=2 Tax=Polarella glacialis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92236contigM-pyrifera_M_contig92236:32..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score151.4
Seed ortholog evalue5.5e-34
Seed eggNOG ortholog29176.XP_003881216.1
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004839,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008641,GO:0009056,GO:0009057,GO:0009987,GO:0016567,GO:0016874,GO:0016877,GO:0019538,GO:0019941,GO:0030163,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0070013,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Belongs to the ubiquitin-activating E1 family
EggNOG OGs3Y9MB@5794,3YJWF@5796,3YSB7@5809,COG0476@1,KOG2012@2759
EC6.2.1.45
COG Functional cat.O
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons1
Model size726
Cds size726
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816835.3734639-CDS-M-pyrifera_M_contig92236:31..7571622816835.3734639-CDS-M-pyrifera_M_contig92236:31..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92236 32..757 +
1692278206.5915833-CDS-M-pyrifera_M_contig92236:31..7571692278206.5915833-CDS-M-pyrifera_M_contig92236:31..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92236 32..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92236.21352.1prot_M-pyrifera_M_contig92236.21352.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92236 32..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92236.21352.1

>prot_M-pyrifera_M_contig92236.21352.1 ID=prot_M-pyrifera_M_contig92236.21352.1|Name=mRNA_M-pyrifera_M_contig92236.21352.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=242bp
EEKAKKEGGGAVEEEGAAAGGGGGDGDDGEDDLEAIERLKAELVTLGDEA
KGVNVEPAVFEKDEDSNFHVAWMTDSSNLRASNYKIKTATFQETKIIAGK
VIPALATTTCAVTGLVAIEMLKVLQDLPVEAYRNTFMNLAVNVFAMSEPM
PPKKVTSTEFDPILAGPLKAVPEGFTPWDRVIIDEGRDLTVKEFCEKLSE
VHHGVTVDMISIGESIIYWPSFHASHKEREDTPLAALIAEHT
back to top

mRNA from alignment at M-pyrifera_M_contig92236:32..757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92236.21352.1 ID=mRNA_M-pyrifera_M_contig92236.21352.1|Name=mRNA_M-pyrifera_M_contig92236.21352.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig92236:32..757+ (Macrocystis pyrifera P11B4 male)
GAAGAAAAGGCGAAGAAGGAAGGTGGAGGTGCTGTCGAGGAAGAAGGTGC AGCAGCAGGGGGTGGTGGTGGAGATGGTGATGATGGAGAAGATGATCTTG AAGCAATTGAGCGTCTCAAGGCAGAATTGGTGACCCTTGGAGACGAAGCA AAAGGTGTCAACGTGGAACCAGCTGTGTTCGAGAAGGATGAAGATTCCAA CTTCCATGTTGCATGGATGACTGATTCTTCCAACTTGCGTGCTTCCAACT ACAAGATCAAGACTGCCACCTTTCAAGAAACCAAGATTATTGCTGGCAAG GTGATCCCAGCACTTGCAACAACCACTTGTGCTGTCACTGGTCTTGTTGC AATTGAAATGCTCAAGGTCTTGCAAGACTTGCCAGTGGAAGCATACCGCA ACACATTCATGAACCTTGCAGTCAATGTCTTTGCCATGAGTGAACCAATG CCACCAAAGAAGGTGACGTCTACTGAATTCGACCCTATCCTTGCAGGCCC ACTCAAGGCAGTCCCAGAAGGCTTTACTCCTTGGGATCGTGTTATCATCG ATGAAGGAAGAGACTTGACAGTCAAGGAGTTTTGTGAAAAGCTCTCTGAA GTCCACCACGGCGTCACAGTCGACATGATCAGCATTGGAGAATCCATCAT CTACTGGCCATCCTTCCACGCCTCCCACAAGGAACGAGAAGACACACCAC TCGCAGCTCTCATCGCAGAACACACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig92236:32..757+

>mRNA_M-pyrifera_M_contig92236.21352.1 ID=mRNA_M-pyrifera_M_contig92236.21352.1|Name=mRNA_M-pyrifera_M_contig92236.21352.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1452bp|location=Sequence derived from alignment at M-pyrifera_M_contig92236:32..757+ (Macrocystis pyrifera P11B4 male)
GAAGAAAAGGCGAAGAAGGAAGGTGGAGGTGCTGTCGAGGAAGAAGGTGC
AGCAGCAGGGGGTGGTGGTGGAGATGGTGATGATGGAGAAGATGATCTTG
AAGCAATTGAGCGTCTCAAGGCAGAATTGGTGACCCTTGGAGACGAAGCA
AAAGGTGTCAACGTGGAACCAGCTGTGTTCGAGAAGGATGAAGATTCCAA
CTTCCATGTTGCATGGATGACTGATTCTTCCAACTTGCGTGCTTCCAACT
ACAAGATCAAGACTGCCACCTTTCAAGAAACCAAGATTATTGCTGGCAAG
GTGATCCCAGCACTTGCAACAACCACTTGTGCTGTCACTGGTCTTGTTGC
AATTGAAATGCTCAAGGTCTTGCAAGACTTGCCAGTGGAAGCATACCGCA
ACACATTCATGAACCTTGCAGTCAATGTCTTTGCCATGAGTGAACCAATG
CCACCAAAGAAGGTGACGTCTACTGAATTCGACCCTATCCTTGCAGGCCC
ACTCAAGGCAGTCCCAGAAGGCTTTACTCCTTGGGATCGTGTTATCATCG
ATGAAGGAAGAGACTTGACAGTCAAGGAGTTTTGTGAAAAGCTCTCTGAA
GTCCACCACGGCGTCACAGTCGACATGATCAGCATTGGAGAATCCATCAT
CTACTGGCCATCCTTCCACGCCTCCCACAAGGAACGAGAAGACACACCAC
TCGCAGCTCTCATCGCAGAACACACCGAAGAAAAGGCGAAGAAGGAAGGT
GGAGGTGCTGTCGAGGAAGAAGGTGCAGCAGCAGGGGGTGGTGGTGGAGA
TGGTGATGATGGAGAAGATGATCTTGAAGCAATTGAGCGTCTCAAGGCAG
AATTGGTGACCCTTGGAGACGAAGCAAAAGGTGTCAACGTGGAACCAGCT
GTGTTCGAGAAGGATGAAGATTCCAACTTCCATGTTGCATGGATGACTGA
TTCTTCCAACTTGCGTGCTTCCAACTACAAGATCAAGACTGCCACCTTTC
AAGAAACCAAGATTATTGCTGGCAAGGTGATCCCAGCACTTGCAACAACC
ACTTGTGCTGTCACTGGTCTTGTTGCAATTGAAATGCTCAAGGTCTTGCA
AGACTTGCCAGTGGAAGCATACCGCAACACATTCATGAACCTTGCAGTCA
ATGTCTTTGCCATGAGTGAACCAATGCCACCAAAGAAGGTGACGTCTACT
GAATTCGACCCTATCCTTGCAGGCCCACTCAAGGCAGTCCCAGAAGGCTT
TACTCCTTGGGATCGTGTTATCATCGATGAAGGAAGAGACTTGACAGTCA
AGGAGTTTTGTGAAAAGCTCTCTGAAGTCCACCACGGCGTCACAGTCGAC
ATGATCAGCATTGGAGAATCCATCATCTACTGGCCATCCTTCCACGCCTC
CCACAAGGAACGAGAAGACACACCACTCGCAGCTCTCATCGCAGAACACA
CC
back to top