mRNA_M-pyrifera_M_contig92231.21350.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92231.21350.1
Unique NamemRNA_M-pyrifera_M_contig92231.21350.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: A0A813GBH0_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GBH0_POLGL)

HSP 1 Score: 84.3 bits (207), Expect = 6.170e-19
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 ITDLTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESYRKVILRPA 225
            ++ L+VHRLLITA+ +A+KF  D F++N  YAKIGG+ + ELNALER F  LLD+ L +   EFE YRK++L+ A
Sbjct:   65 VSKLSVHRLLITAMVVAAKFQDDVFFTNAHYAKIGGLRVDELNALERRFCQLLDWRLFVKPGEFELYRKIVLKAA 139          
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: A0A813E3J6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E3J6_POLGL)

HSP 1 Score: 84.3 bits (207), Expect = 6.330e-19
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 ITDLTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESYRKVILRPA 225
            I +L +HRLL+T+V L+ KF  D +YSN +YAK+GGV  KE+N LE +FL+L+D+ L++T EEF+ YR  +   A
Sbjct:   51 ICNLNIHRLLVTSVMLSVKFFDDVYYSNAYYAKVGGVRTKEVNVLEAQFLHLIDWRLAVTSEEFDQYRSHVCTAA 125          
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: A0A1A8W579_PLAMA (Cyclin n=1 Tax=Plasmodium malariae TaxID=5858 RepID=A0A1A8W579_PLAMA)

HSP 1 Score: 85.1 bits (209), Expect = 1.580e-18
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   10 LTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESYRKVI 213
            L +HRL+ITAV +++KF  D +YSN FYAK+GGVT KELN LE  FL LLD+ L ++ EE++ YRK I
Sbjct:   91 LCIHRLIITAVMISAKFFDDLYYSNSFYAKVGGVTTKELNKLEVYFLNLLDYKLYVSSEEYDFYRKYI 158          
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: A0A1J1H6D2_PLARL (Cyclin n=2 Tax=Plasmodium (Haemamoeba) TaxID=418104 RepID=A0A1J1H6D2_PLARL)

HSP 1 Score: 84.3 bits (207), Expect = 2.910e-18
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   10 LTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESYRKVI 213
            L +HR++ITA  +A+KF  D +YSN FYAK+GGVT KELN LE  FL LLD+ L ++ +E++ YRK I
Sbjct:   90 LCIHRIIITAAMIAAKFFDDLYYSNSFYAKVGGVTTKELNKLEAHFLNLLDYKLFVSSQEYDFYRKYI 157          
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: A0A7S2D6R1_9DINO (Cyclin n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2D6R1_9DINO)

HSP 1 Score: 82.8 bits (203), Expect = 4.060e-18
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 ITDLTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESYRKVILR 219
            I  L +HRLL+T+V L +KF  D +YSN +YAK+GGV L+ELNALE  FL LL + L +  +E+E YRK +LR
Sbjct:   85 ICSLNIHRLLVTSVMLGAKFFDDVYYSNAYYAKVGGVRLQELNALEALFLRLLGWRLHVLPQEYEQYRKHVLR 157          
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: A0A077TML6_PLACH (Cyclin n=14 Tax=Plasmodium (Vinckeia) TaxID=418101 RepID=A0A077TML6_PLACH)

HSP 1 Score: 83.2 bits (204), Expect = 7.510e-18
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   10 LTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESYRKVI 213
            L +HRL+ITAV +++KF  D +YSN FYAK+GG+T KELN LE  FL LLD+ L ++  E+  YRK I
Sbjct:   90 LCIHRLIITAVMISAKFFDDLYYSNAFYAKVGGITTKELNKLEAHFLNLLDYKLYVSSHEYNFYRKYI 157          
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: D8RQT2_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RQT2_SELML)

HSP 1 Score: 84.0 bits (206), Expect = 8.720e-18
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 ITDLTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESYRKVILRPARLTVAR 243
            IT L VHRLL+T+V  ASK   D  ++N F+A++GG++  E+N LE EFL+ LDF L++T +EFESY   + R ARL  AR
Sbjct:  152 ITPLNVHRLLVTSVMTASKILDDVHFNNAFFARVGGISTSEVNKLELEFLFRLDFRLTVTVQEFESYCSYLDREARLPSAR 232          
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: A0A8H7V083_9FUNG (Uncharacterized protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7V083_9FUNG)

HSP 1 Score: 82.8 bits (203), Expect = 1.320e-17
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 ITDLTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESYRKVILRPA 225
            I    +HRLLIT++ +ASKF SD FY+N  YAK+GG+ L+ELN LE EFL+L+DF L +T E  ++Y   +L  A
Sbjct:   89 INSYNIHRLLITSIVVASKFTSDIFYANSRYAKVGGIPLRELNQLELEFLFLIDFQLHVTLENLQAYADQLLSHA 163          
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: A0A6T9AUW3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A6T9AUW3_NOCSC)

HSP 1 Score: 82.4 bits (202), Expect = 1.350e-17
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 ITDLTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESYR 204
            I  L +HRLL+TAV LA KF  D +YSN +YAK+GGV LKE+N LE +FL L+D+ L +T +E+  YR
Sbjct:  107 ICSLNIHRLLVTAVMLAVKFFDDVYYSNAYYAKVGGVKLKEVNTLEAQFLQLIDWRLHVTPQEYSQYR 174          
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Match: A0A8J2S837_9STRA (Cyclin n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S837_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.890e-17
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 ITDLTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFLYLLDFSLSITDEEFESY 201
            ++ L VHRLLITAV +ASKF  D FY N FYA++GG+ L+ELN LE EFL+ L+FSL ++  E++ Y
Sbjct:   89 LSPLNVHRLLITAVCVASKFLDDSFYPNSFYAQLGGIPLEELNRLEVEFLFSLNFSLHVSPSEYDRY 155          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92231.21350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813GBH0_POLGL6.170e-1954.67Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A813E3J6_POLGL6.330e-1950.67Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A1A8W579_PLAMA1.580e-1858.82Cyclin n=1 Tax=Plasmodium malariae TaxID=5858 RepI... [more]
A0A1J1H6D2_PLARL2.910e-1855.88Cyclin n=2 Tax=Plasmodium (Haemamoeba) TaxID=41810... [more]
A0A7S2D6R1_9DINO4.060e-1854.79Cyclin n=1 Tax=Alexandrium andersonii TaxID=327968... [more]
A0A077TML6_PLACH7.510e-1855.88Cyclin n=14 Tax=Plasmodium (Vinckeia) TaxID=418101... [more]
D8RQT2_SELML8.720e-1851.85Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
A0A8H7V083_9FUNG1.320e-1752.00Uncharacterized protein n=1 Tax=Mucor saturninus T... [more]
A0A6T9AUW3_NOCSC1.350e-1755.88Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A8J2S837_9STRA3.890e-1756.72Cyclin n=1 Tax=Pelagomonas calceolata TaxID=35677 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92231contigM-pyrifera_M_contig92231:4..246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.2
Seed ortholog evalue6.2e-14
Seed eggNOG ortholog88036.EFJ22391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of cyclin-dependent protein serine/threonine kinase activity
EggNOG OGs37JIS@33090,3GA7C@35493,KOG1674@1,KOG1674@2759
COG Functional cat.D
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816835.304582-CDS-M-pyrifera_M_contig92231:3..2461622816835.304582-CDS-M-pyrifera_M_contig92231:3..246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92231 4..246 +
1692278206.5554085-CDS-M-pyrifera_M_contig92231:3..2461692278206.5554085-CDS-M-pyrifera_M_contig92231:3..246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92231 4..246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92231.21350.1prot_M-pyrifera_M_contig92231.21350.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92231 4..246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92231.21350.1

>prot_M-pyrifera_M_contig92231.21350.1 ID=prot_M-pyrifera_M_contig92231.21350.1|Name=mRNA_M-pyrifera_M_contig92231.21350.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
ITDLTVHRLLITAVGLASKFASDFFYSNKFYAKIGGVTLKELNALEREFL
YLLDFSLSITDEEFESYRKVILRPARLTVAR
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mRNA from alignment at M-pyrifera_M_contig92231:4..246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92231.21350.1 ID=mRNA_M-pyrifera_M_contig92231.21350.1|Name=mRNA_M-pyrifera_M_contig92231.21350.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig92231:4..246+ (Macrocystis pyrifera P11B4 male)
ATAACCGATCTGACCGTTCACCGTCTGCTGATCACCGCTGTTGGTTTGGC GTCAAAGTTCGCCTCGGACTTCTTCTACAGCAACAAGTTCTATGCCAAGA TCGGCGGCGTCACCCTCAAGGAGCTGAATGCCCTGGAGCGCGAGTTTCTC TACCTCCTCGACTTCAGCCTCTCCATCACCGACGAAGAGTTCGAGTCCTA CCGGAAGGTGATCCTCCGGCCGGCCCGCCTCACGGTGGCGCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92231:4..246+

>mRNA_M-pyrifera_M_contig92231.21350.1 ID=mRNA_M-pyrifera_M_contig92231.21350.1|Name=mRNA_M-pyrifera_M_contig92231.21350.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig92231:4..246+ (Macrocystis pyrifera P11B4 male)
ATAACCGATCTGACCGTTCACCGTCTGCTGATCACCGCTGTTGGTTTGGC
GTCAAAGTTCGCCTCGGACTTCTTCTACAGCAACAAGTTCTATGCCAAGA
TCGGCGGCGTCACCCTCAAGGAGCTGAATGCCCTGGAGCGCGAGTTTCTC
TACCTCCTCGACTTCAGCCTCTCCATCACCGACGAAGAGTTCGAGTCCTA
CCGGAAGGTGATCCTCCGGCCGGCCCGCCTCACGGTGGCGCGGATAACCG
ATCTGACCGTTCACCGTCTGCTGATCACCGCTGTTGGTTTGGCGTCAAAG
TTCGCCTCGGACTTCTTCTACAGCAACAAGTTCTATGCCAAGATCGGCGG
CGTCACCCTCAAGGAGCTGAATGCCCTGGAGCGCGAGTTTCTCTACCTCC
TCGACTTCAGCCTCTCCATCACCGACGAAGAGTTCGAGTCCTACCGGAAG
GTGATCCTCCGGCCGGCCCGCCTCACGGTGGCGCGG
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