mRNA_M-pyrifera_M_contig92230.21349.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92230.21349.1
Unique NamemRNA_M-pyrifera_M_contig92230.21349.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: R1DRZ0_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRZ0_EMIHU)

HSP 1 Score: 108 bits (270), Expect = 9.060e-26
Identity = 59/117 (50.43%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   22 TALFIAWERALESKRPDALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAVRTTYIDRWLNTSVENAGDSAEHLQVVNLGAGVCTRPYRLECLSK-VRAVFQVDLE 369
            +A+ IAWERALESKRPDALF DPLAE L G  GE  S  F ++S  FG  DW+ +H+ W AVRT +ID  +         +    Q+VNLGAG+ TRPYRLEC        F VD++
Sbjct:   14 SAMMIAWERALESKRPDALFVDPLAEALAGTKGETLSAGFGNMSQMFGFEDWAAFHKTWVAVRTRFIDDRVKEC------ACGFKQLVNLGAGMDTRPYRLECYKAFANGSFNVDMK 124          
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: A0A7S2HZJ2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HZJ2_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 7.640e-25
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 1
Query:   22 TALFIAWERALESKRPDALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAVRTTYIDRWLNTSVENAGDSAEHLQVVNLGAGVCTRPYRLEC 330
            +A+ IAWER+LES RPDALF DP A  L  + GEA S  F + ++ FGL DW E+H+ WT+VRT YID     +V     +    Q+VNLGAG+ TR YRL C
Sbjct:   56 SAMMIAWERSLESARPDALFHDPFAAALASDKGEALSEGFGANAALFGLADWPEFHKTWTSVRTKYID----DTVTRHASTGRFRQLVNLGAGMDTRAYRLPC 154          
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: A0A7S4MHH4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MHH4_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 2.430e-24
Identity = 58/142 (40.85%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    4 MSASEKTALFIAWERALESKRPDALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAVRTTYIDRWLNTSVENAGDSAEHLQVVNLGAGVCTRPYRLECLSKVRA-VFQVDLENMTKFRQRALASLDDIEPL 426
            +S   KT+L IA+ER+LE +R + LFSDP A  L G +G   S   A+ ++ FG  +W ++H+ WT VRT +ID++L    + A ++++  Q++NLGAG+ +R YRLECL      V+++DL  + + ++  LA L+ IEPL
Sbjct:   32 LSNVNKTSLMIAYERSLEEQRENPLFSDPFAAALAGTAGVTFSEGMAANAAMFGFPEWPDFHRTWTGVRTAFIDQFLIK--QTASNTSDSFQLLNLGAGMDSRTYRLECLKNSGTKVWEIDLPAVNEIKEEVLAKLN-IEPL 170          
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: A0A7S4QP10_9DINO (Hypothetical protein n=4 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QP10_9DINO)

HSP 1 Score: 102 bits (254), Expect = 1.830e-23
Identity = 63/147 (42.86%), Postives = 85/147 (57.82%), Query Frame = 1
Query:   22 TALFIAWERALESKRPDALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAVRTTYIDRWLNTSVENAGDSAEHLQVVNLGAGVCTRPYRLECL-SKVRAVFQVDLENMTKFRQRALAS-LDDIEPLARSIVDISYD 456
            +A  IA+ERALES RPDALF DP A+ + G  GE  S  F +  S FGL  W E+H+ WTAVRT +ID  +    E+A  +    Q+VNLGAG+ TR YRLEC  S     F+VD+E +   + +     L +  P    + ++S D
Sbjct:   29 SAKMIAYERALESGRPDALFQDPFAKAMAGPKGEMLSEAFGANCSYFGLDGWPEFHKMWTAVRTRFIDDCI---AEHAA-TGRFPQLVNLGAGLDTRAYRLECYKSFANGSFEVDMETVNAGKAKVFRDCLGEPSPRCGQVHNVSLD 171          
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: A0A1Q9E238_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E238_SYMMI)

HSP 1 Score: 100 bits (249), Expect = 9.530e-23
Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 EMSASEKTALFIAWERALESKR-PDALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAVRTTYIDRWLNTSVENAGDSAEHLQVVNLGAGVCTRPYRLECLSKVRAVFQVD 363
            E+S   +TA  +A ERALE+ R  DALFSDP A+ L G+ G   S K    ++ FG  +W E+H+ WT VRT +ID  +       G   +  Q+VNLGAGV TRPYRLE  SK++A ++VD
Sbjct:   18 EVSVVGRTAFMVAAERALETDRGKDALFSDPFAKVLAGKDGREMSDKLGEAAAQFGFENWPEFHKVWTVVRTKFIDDII-------GSLTDQKQMVNLGAGVDTRPYRLEGYSKLKASYEVD 132          
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: A0A812T239_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812T239_9DINO)

HSP 1 Score: 100 bits (248), Expect = 1.310e-21
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 EMSASEKTALFIAWERALESKR-PDALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAVRTTYIDRWLNTSVENAGDSAEHLQVVNLGAGVCTRPYRLECLSKVRAVFQVD 363
            E+S   +TA  +A ERALE+ R  DALFSDP A+ L G+ G   S K    ++ FG  +W E+H+ WT VRT +ID  +       G   +  Q+VNLGAGV TRPYRLE  SK++A +++D
Sbjct:  293 EVSVVGRTAFMVAAERALETDRGKDALFSDPFAKVLAGKDGHEMSDKLGEAAAQFGFENWPEFHKVWTVVRTRFIDDII-------GSLTDQKQMVNLGAGVDTRPYRLEGYSKLKASYEID 407          
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: A0A812JNB6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812JNB6_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 1.990e-20
Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 EMSASEKTALFIAWERALESKRP-DALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAVRTTYIDRWLNTSVENAGDSAEHLQVVNLGAGVCTRPYRLECLSKVRAVFQVD 363
            E+S   +TA  +A ERA+E+ R  DALF DP A+ L G+ G   S K    ++ FG   W E+H+ WT VRT +ID  +       G   +  Q+VNLGAGV TRPYRLE  SK++A ++VD
Sbjct:  319 EVSVVGRTAFMVAAERAIETDREKDALFVDPFAKVLAGKDGHEMSDKLGEAAAQFGFEGWPEFHKVWTVVRTKFIDDII-------GSLTDQKQMVNLGAGVDTRPYRLEGYSKLKASYEVD 433          
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: A0A7S2IC03_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2IC03_9DINO)

HSP 1 Score: 89.7 bits (221), Expect = 7.050e-19
Identity = 52/126 (41.27%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   28 LFIAWERALESKRPDALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAVRTTYIDRWLNTSVENAGDSAEHLQVVNLGAGVCTRPYRLECLSKVRA-VFQVDLENMTKFRQRALA 402
            + +A+ERALE+ RPDALF DP A  +  + G+  S          GL  W E+HQ WTAVRT +ID+     V     +    Q VNLGAG+ TR YRL+C    R   F+VD+E +   ++R  A
Sbjct:    1 MMVAYERALETWRPDALFQDPFAIAMATDKGKMLSETVCERCGKVGLAGWPEFHQMWTAVRTKFIDQ----RVAELAATDSFTQFVNLGAGLDTRAYRLQCFLAFRGGCFEVDMEVVNNGKRRIFA 122          
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: A0A7S1PN47_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1PN47_ALECA)

HSP 1 Score: 84.7 bits (208), Expect = 2.280e-18
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   22 TALFIAWERALESKRPDALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAVRTTYID 225
            +A+ IAWER+LES+RPDALF DPLA  L G  GE+ SG F ++S  FG  DW  +H+ W AVRT +ID
Sbjct:   38 SAMMIAWERSLESQRPDALFDDPLAAALAGTKGESLSGSFEAMSKTFGFEDWGGFHKTWVAVRTRFID 105          
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Match: A0A1V9FWK1_9BACT (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Niastella vici TaxID=1703345 RepID=A0A1V9FWK1_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 7.090e-15
Identity = 61/146 (41.78%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   22 TALFIAWERALESKRPDALFSDPLAEKLVGESGEASSGKFASVSSAFGLGDWSEYHQQWTAV-RTTYIDRWLNTSVENAGDSAEHLQVVNLGAGVCTRPYRLECLSKVRAVFQVDLENMTKFRQRALASLDDIEPLARSIVDISYD 456
            TAL+IA  RALES+RPDA+F DPLA KL GE G      F  V+ A  + D    H  +  V RTT IDR +N ++E   D+     V+NLGAG+ TRPYR+     +R V +VD  +M  ++ + L +      L R   D+S D
Sbjct:   12 TALWIAAYRALESERPDAVFKDPLARKLAGERG------FQMVA-ATPIKD----HMSFAMVTRTTGIDRLINIAIERGIDT-----VINLGAGLDTRPYRMPLPVNLRWV-EVDFPHMIDYKNKLLENEKPACHLQRLAADLSND 140          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92230.21349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R1DRZ0_EMIHU9.060e-2650.43Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2HZJ2_9EUKA7.640e-2551.46Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S4MHH4_9EUKA2.430e-2440.85Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4QP10_9DINO1.830e-2342.86Hypothetical protein n=4 Tax=Alexandrium monilatum... [more]
A0A1Q9E238_SYMMI9.530e-2346.72Uncharacterized protein n=1 Tax=Symbiodinium micro... [more]
A0A812T239_9DINO1.310e-2145.90Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812JNB6_9DINO1.990e-2045.08Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A7S2IC03_9DINO7.050e-1941.27Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S1PN47_ALECA2.280e-1857.35Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A1V9FWK1_9BACT7.090e-1541.78S-adenosyl-L-methionine-dependent methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92230contigM-pyrifera_M_contig92230:312..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.4
Seed ortholog evalue6.3e-12
Seed eggNOG ortholog1121022.ABENE_01730
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
EggNOG OGs1RG18@1224,2VFMW@28211,COG3315@1,COG3315@2
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-28_002500.1
COG Functional cat.H
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816835.2589073-UTR-M-pyrifera_M_contig92230:311..3141622816835.2589073-UTR-M-pyrifera_M_contig92230:311..314Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92230 312..314 +
1692278206.5241594-UTR-M-pyrifera_M_contig92230:311..3141692278206.5241594-UTR-M-pyrifera_M_contig92230:311..314Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92230 312..314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816835.2703001-CDS-M-pyrifera_M_contig92230:314..7671622816835.2703001-CDS-M-pyrifera_M_contig92230:314..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92230 315..767 +
1692278206.5417597-CDS-M-pyrifera_M_contig92230:314..7671692278206.5417597-CDS-M-pyrifera_M_contig92230:314..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92230 315..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92230.21349.1prot_M-pyrifera_M_contig92230.21349.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92230 315..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92230.21349.1

>prot_M-pyrifera_M_contig92230.21349.1 ID=prot_M-pyrifera_M_contig92230.21349.1|Name=mRNA_M-pyrifera_M_contig92230.21349.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MSASEKTALFIAWERALESKRPDALFSDPLAEKLVGESGEASSGKFASVS
SAFGLGDWSEYHQQWTAVRTTYIDRWLNTSVENAGDSAEHLQVVNLGAGV
CTRPYRLECLSKVRAVFQVDLENMTKFRQRALASLDDIEPLARSIVDISY
D
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mRNA from alignment at M-pyrifera_M_contig92230:312..767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92230.21349.1 ID=mRNA_M-pyrifera_M_contig92230.21349.1|Name=mRNA_M-pyrifera_M_contig92230.21349.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig92230:312..767+ (Macrocystis pyrifera P11B4 male)
GAGATGAGCGCGTCCGAGAAGACGGCCCTCTTCATTGCCTGGGAGCGTGC CTTGGAGTCAAAGAGACCTGACGCTCTCTTCAGTGACCCTCTGGCGGAGA AGCTTGTGGGTGAGAGCGGGGAGGCGTCCTCAGGGAAGTTCGCTAGCGTC TCGTCGGCTTTTGGCTTGGGCGATTGGTCCGAGTATCACCAGCAGTGGAC GGCCGTGCGCACCACGTACATCGACCGCTGGCTCAATACTTCAGTCGAGA ACGCAGGAGACTCTGCAGAGCACCTTCAGGTGGTAAACTTGGGTGCAGGA GTCTGCACTCGGCCCTACCGCCTCGAGTGCCTGTCAAAGGTGCGGGCCGT GTTCCAGGTGGACCTCGAGAACATGACCAAGTTCAGGCAAAGGGCGCTCG CCAGCCTGGACGACATAGAGCCTCTCGCCCGGTCGATTGTGGACATCAGC TACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92230:312..767+

>mRNA_M-pyrifera_M_contig92230.21349.1 ID=mRNA_M-pyrifera_M_contig92230.21349.1|Name=mRNA_M-pyrifera_M_contig92230.21349.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig92230:312..767+ (Macrocystis pyrifera P11B4 male)
ATGAGCGCGTCCGAGAAGACGGCCCTCTTCATTGCCTGGGAGCGTGCCTT
GGAGTCAAAGAGACCTGACGCTCTCTTCAGTGACCCTCTGGCGGAGAAGC
TTGTGGGTGAGAGCGGGGAGGCGTCCTCAGGGAAGTTCGCTAGCGTCTCG
TCGGCTTTTGGCTTGGGCGATTGGTCCGAGTATCACCAGCAGTGGACGGC
CGTGCGCACCACGTACATCGACCGCTGGCTCAATACTTCAGTCGAGAACG
CAGGAGACTCTGCAGAGCACCTTCAGGTGGTAAACTTGGGTGCAGGAGTC
TGCACTCGGCCCTACCGCCTCGAGTGCCTGTCAAAGGTGCGGGCCGTGTT
CCAGGTGGACCTCGAGAACATGACCAAGTTCAGGCAAAGGGCGCTCGCCA
GCCTGGACGACATAGAGCCTCTCGCCCGGTCGATTGTGGACATCAGCTAC
GACATGAGCGCGTCCGAGAAGACGGCCCTCTTCATTGCCTGGGAGCGTGC
CTTGGAGTCAAAGAGACCTGACGCTCTCTTCAGTGACCCTCTGGCGGAGA
AGCTTGTGGGTGAGAGCGGGGAGGCGTCCTCAGGGAAGTTCGCTAGCGTC
TCGTCGGCTTTTGGCTTGGGCGATTGGTCCGAGTATCACCAGCAGTGGAC
GGCCGTGCGCACCACGTACATCGACCGCTGGCTCAATACTTCAGTCGAGA
ACGCAGGAGACTCTGCAGAGCACCTTCAGGTGGTAAACTTGGGTGCAGGA
GTCTGCACTCGGCCCTACCGCCTCGAGTGCCTGTCAAAGGTGCGGGCCGT
GTTCCAGGTGGACCTCGAGAACATGACCAAGTTCAGGCAAAGGGCGCTCG
CCAGCCTGGACGACATAGAGCCTCTCGCCCGGTCGATTGTGGACATCAGC
TACGAC
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