mRNA_M-pyrifera_M_contig92182.21345.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig92182.21345.1
Unique Name	mRNA_M-pyrifera_M_contig92182.21345.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: UPI001F2DA7F6 (transglutaminase-like domain-containing protein n=1 Tax=Bremerella alba TaxID=980252 RepID=UPI001F2DA7F6)

HSP 1 Score: 280 bits (716), Expect = 2.180e-95
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEPPRADMN 390
            PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTW+PPPGKEPPRAD N
Sbjct:   29 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWMPPPGKEPPRADTN 158

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BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: A0A7V9A9B8_9BACT (TGc domain-containing protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V9A9B8_9BACT)

HSP 1 Score: 280 bits (716), Expect = 5.320e-93
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEPPRADMN 390
            PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTW+PPPGKEPPRAD N
Sbjct:  193 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWMPPPGKEPPRADTN 322

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BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: A0A518CB02_9BACT (Transglutaminase-like superfamily protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518CB02_9BACT)

HSP 1 Score: 255 bits (652), Expect = 2.570e-83
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEPPRAD 384
            PM GAVAALD+GRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKT DGTDRWVAVEMTGN+ +GQSPEKRPILQKGDNFRIPGSR+PQHYVKQELAIRDYKG+TPPVVTWLP PGK+PP+A+
Sbjct:  193 PMKGAVAALDEGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTDDGTDRWVAVEMTGNWPFGQSPEKRPILQKGDNFRIPGSRKPQHYVKQELAIRDYKGSTPPVVTWLPTPGKDPPQAN 320

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BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: A0A2S8F5J1_9BACT (TGc domain-containing protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8F5J1_9BACT)

HSP 1 Score: 253 bits (646), Expect = 2.220e-82
Identity = 115/130 (88.46%), Postives = 123/130 (94.62%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEPPRADMN 390
            PM GAV ALD+GRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTK+ DG+DRWVAVEMTGN+ +GQSPEKRPILQKGDNFRI GSR PQHYVKQELAIRDYKGN+PPVVTWLP PGKEPPRA+M+
Sbjct:  193 PMKGAVTALDEGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKSNDGSDRWVAVEMTGNWPFGQSPEKRPILQKGDNFRIQGSRTPQHYVKQELAIRDYKGNSPPVVTWLPAPGKEPPRANMD 322

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BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: A0A2S8G152_9BACT (TGc domain-containing protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8G152_9BACT)

HSP 1 Score: 251 bits (641), Expect = 1.130e-81
Identity = 113/128 (88.28%), Postives = 121/128 (94.53%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEPPRAD 384
            PM GAVAALD GRGDCEEMTTLFVALCRAG+VPARTVWVPGHCYPEFLTKT DGT+RWVAVEMT NF +GQSPEKRPILQKGD+FR+PG+R+PQHYVKQELAIRDYKG T PV+TWLPPPGKEPPRAD
Sbjct:  191 PMKGAVAALDDGRGDCEEMTTLFVALCRAGDVPARTVWVPGHCYPEFLTKTADGTNRWVAVEMTNNFPFGQSPEKRPILQKGDSFRLPGNRKPQHYVKQELAIRDYKGTTSPVITWLPPPGKEPPRAD 318

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BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: UPI001CCD8B8A (transglutaminase family protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCD8B8A)

HSP 1 Score: 240 bits (613), Expect = 2.450e-77
Identity = 108/128 (84.38%), Postives = 118/128 (92.19%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEPPRAD 384
            PM GA+AALD+GRGDCEEMTTLFVALCRAGE+PARTVWVPGHCYPEFLT+T DG +RWVAVEMT NF +G SPEKRPILQKGDNFRIPG+RRPQHYVKQELAIRDYKG  PPV++WLPP  KEPPRA+
Sbjct:  198 PMKGALAALDEGRGDCEEMTTLFVALCRAGEIPARTVWVPGHCYPEFLTQTADGENRWVAVEMTSNFPFGVSPEKRPILQKGDNFRIPGNRRPQHYVKQELAIRDYKGTAPPVISWLPPETKEPPRAN 325

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BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: A0A2S8FBX8_9BACT (Transglutaminase n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8FBX8_9BACT)

HSP 1 Score: 239 bits (609), Expect = 5.700e-77
Identity = 108/126 (85.71%), Postives = 116/126 (92.06%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEPPR 378
            PM GA+AAL  G+GDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKT DG +RWVAVEMT +F +GQSPE RPILQKGD+FRIPGSR+PQHYVKQELAIRDYKG TPPV+ WLPPPGKEPPR
Sbjct:  179 PMKGALAALADGKGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTADGKERWVAVEMTNDFPFGQSPETRPILQKGDSFRIPGSRQPQHYVKQELAIRDYKGTTPPVIKWLPPPGKEPPR 304

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BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: A0A368KY15_9BACT (Transglutaminase family protein n=1 Tax=Blastopirellula cremea TaxID=1031537 RepID=A0A368KY15_9BACT)

HSP 1 Score: 237 bits (604), Expect = 4.300e-76
Identity = 107/127 (84.25%), Postives = 114/127 (89.76%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEPPRA 381
            PM GAVAAL+ GRGDCEEMTTLFVALCRAG VPARTVWVPGHCYPEFL KT DG DRWVAVEMT +F +GQSPEKRPILQKGDNFR+PG+R+ QHYVKQEL IRDYKG T PV+TWLPPPGKEPP A
Sbjct:  189 PMKGAVAALNDGRGDCEEMTTLFVALCRAGNVPARTVWVPGHCYPEFLVKTADGADRWVAVEMTNDFPFGQSPEKRPILQKGDNFRLPGNRKSQHYVKQELVIRDYKGTTAPVITWLPPPGKEPPPA 315

[Close]

BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: A0A2S8GCS9_9BACT (Transglutaminase n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GCS9_9BACT)

HSP 1 Score: 237 bits (604), Expect = 6.970e-76
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEPPRAD 384
            PM GAVAAL +GRGDCEEMTTLFVALCRAG VPARTVWVPGHCYPEFLT+T +G +RWVAVEMT NF +G+SPEKRPILQKGDNFRIPG R PQHYVKQ L IRDYKG +PP ++WLPPPGKEPPRAD
Sbjct:  205 PMKGAVAALAEGRGDCEEMTTLFVALCRAGGVPARTVWVPGHCYPEFLTQTNEGMERWVAVEMTNNFPFGESPEKRPILQKGDNFRIPGDRTPQHYVKQNLVIRDYKGTSPPEISWLPPPGKEPPRAD 332

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BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Match: A0A5C5UXF2_9BACT (Transglutaminase-like superfamily protein n=1 Tax=Blastopirellula retiformator TaxID=2527970 RepID=A0A5C5UXF2_9BACT)

HSP 1 Score: 195 bits (495), Expect = 1.680e-59
Identity = 85/124 (68.55%), Postives = 100/124 (80.65%), Query Frame = 1

Query:    1 PMMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKTKDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQELAIRDYKGNTPPVVTWLPPPGKEP 372
            P+ GAVAAL++GRGDCEEMT LFVALCRA ++PARTVWVPGHCYPE   + + G  RWV  EMT  F  G+SPE RPILQKGDNFR+ GSRRP+HYVK  ++I++Y G+TPPVV W PPPG EP
Sbjct:  197 PLKGAVAALEEGRGDCEEMTALFVALCRAAKIPARTVWVPGHCYPEVYLQPEIGDPRWVIAEMTNQFPLGESPETRPILQKGDNFRVQGSRRPEHYVKPTMSIKNYNGSTPPVVQWFPPPGVEP 320

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig92182.21345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI001F2DA7F6	2.180e-95	98.46	transglutaminase-like domain-containing protein n=...	[more]
A0A7V9A9B8_9BACT	5.320e-93	98.46	TGc domain-containing protein n=1 Tax=Bremerella a...	[more]
A0A518CB02_9BACT	2.570e-83	90.63	Transglutaminase-like superfamily protein n=1 Tax=...	[more]
A0A2S8F5J1_9BACT	2.220e-82	88.46	TGc domain-containing protein n=1 Tax=Blastopirell...	[more]
A0A2S8G152_9BACT	1.130e-81	88.28	TGc domain-containing protein n=1 Tax=Blastopirell...	[more]
UPI001CCD8B8A	2.450e-77	84.38	transglutaminase family protein n=1 Tax=Bremerella...	[more]
A0A2S8FBX8_9BACT	5.700e-77	85.71	Transglutaminase n=1 Tax=Blastopirellula marina Ta...	[more]
A0A368KY15_9BACT	4.300e-76	84.25	Transglutaminase family protein n=1 Tax=Blastopire...	[more]
A0A2S8GCS9_9BACT	6.970e-76	82.81	Transglutaminase n=1 Tax=Blastopirellula marina Ta...	[more]
A0A5C5UXF2_9BACT	1.680e-59	68.55	Transglutaminase-like superfamily protein n=1 Tax=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig92182	contig	M-pyrifera_M_contig92182:3..395 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	191.0
Seed ortholog evalue	3.4e-46
Seed eggNOG ortholog	314230.DSM3645_05405
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Transglutaminase-like superfamily
EggNOG OGs	2J2UM@203682,COG1305@1,COG1305@2
COG Functional cat.	E
Best tax level	Planctomycetes
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	393
Cds size	390
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816835.0986512-UTR-M-pyrifera_M_contig92182:2..5	1622816835.0986512-UTR-M-pyrifera_M_contig92182:2..5	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig92182 3..5 +
1692278206.4309533-UTR-M-pyrifera_M_contig92182:2..5	1692278206.4309533-UTR-M-pyrifera_M_contig92182:2..5	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig92182 3..5 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816835.1118815-CDS-M-pyrifera_M_contig92182:5..395	1622816835.1118815-CDS-M-pyrifera_M_contig92182:5..395	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig92182 6..395 +
1692278206.4477973-CDS-M-pyrifera_M_contig92182:5..395	1692278206.4477973-CDS-M-pyrifera_M_contig92182:5..395	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig92182 6..395 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig92182.21345.1	prot_M-pyrifera_M_contig92182.21345.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig92182 6..395 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig92182:3..395+
coding sequence from alignment at M-pyrifera_M_contig92182:3..395+

protein sequence of mRNA_M-pyrifera_M_contig92182.21345.1

>prot_M-pyrifera_M_contig92182.21345.1 ID=prot_M-pyrifera_M_contig92182.21345.1|Name=mRNA_M-pyrifera_M_contig92182.21345.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MMGAVAALDKGRGDCEEMTTLFVALCRAGEVPARTVWVPGHCYPEFLTKT
KDGTDRWVAVEMTGNFEYGQSPEKRPILQKGDNFRIPGSRRPQHYVKQEL
AIRDYKGNTPPVVTWLPPPGKEPPRADMN*

mRNA from alignment at M-pyrifera_M_contig92182:3..395+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig92182.21345.1 ID=mRNA_M-pyrifera_M_contig92182.21345.1|Name=mRNA_M-pyrifera_M_contig92182.21345.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig92182:3..395+ (Macrocystis pyrifera P11B4 male)
CCCATGATGGGAGCGGTCGCTGCGTTGGATAAAGGCCGTGGGGATTGCGA
AGAAATGACAACCTTATTTGTTGCCCTCTGTCGTGCTGGTGAGGTTCCAG
CGAGAACCGTCTGGGTTCCTGGCCACTGCTATCCTGAATTTCTAACCAAG
ACCAAAGACGGTACCGATCGCTGGGTAGCCGTCGAAATGACCGGCAACTT
TGAATACGGACAATCGCCAGAGAAACGACCCATCCTCCAAAAGGGAGACA
ACTTCCGCATACCAGGAAGCCGTCGACCCCAGCACTATGTCAAGCAAGAG
CTCGCCATTCGTGACTACAAGGGGAACACGCCCCCGGTAGTCACCTGGTT
GCCGCCACCCGGGAAAGAGCCACCCCGAGCGGACATGAACTAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig92182:3..395+

>mRNA_M-pyrifera_M_contig92182.21345.1 ID=mRNA_M-pyrifera_M_contig92182.21345.1|Name=mRNA_M-pyrifera_M_contig92182.21345.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig92182:3..395+ (Macrocystis pyrifera P11B4 male)
ATGATGGGAGCGGTCGCTGCGTTGGATAAAGGCCGTGGGGATTGCGAAGA
AATGACAACCTTATTTGTTGCCCTCTGTCGTGCTGGTGAGGTTCCAGCGA
GAACCGTCTGGGTTCCTGGCCACTGCTATCCTGAATTTCTAACCAAGACC
AAAGACGGTACCGATCGCTGGGTAGCCGTCGAAATGACCGGCAACTTTGA
ATACGGACAATCGCCAGAGAAACGACCCATCCTCCAAAAGGGAGACAACT
TCCGCATACCAGGAAGCCGTCGACCCCAGCACTATGTCAAGCAAGAGCTC
GCCATTCGTGACTACAAGGGGAACACGCCCCCGGTAGTCACCTGGTTGCC
GCCACCCGGGAAAGAGCCACCCCGAGCGGACATGAACTAGATGATGGGAG
CGGTCGCTGCGTTGGATAAAGGCCGTGGGGATTGCGAAGAAATGACAACC
TTATTTGTTGCCCTCTGTCGTGCTGGTGAGGTTCCAGCGAGAACCGTCTG
GGTTCCTGGCCACTGCTATCCTGAATTTCTAACCAAGACCAAAGACGGTA
CCGATCGCTGGGTAGCCGTCGAAATGACCGGCAACTTTGAATACGGACAA
TCGCCAGAGAAACGACCCATCCTCCAAAAGGGAGACAACTTCCGCATACC
AGGAAGCCGTCGACCCCAGCACTATGTCAAGCAAGAGCTCGCCATTCGTG
ACTACAAGGGGAACACGCCCCCGGTAGTCACCTGGTTGCCGCCACCCGGG
AAAGAGCCACCCCGAGCGGACATGAACTAG