mRNA_M-pyrifera_M_contig92177.21344.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92177.21344.1
Unique NamemRNA_M-pyrifera_M_contig92177.21344.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A383WJL6_TETOB (PDCD2_C domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WJL6_TETOB)

HSP 1 Score: 115 bits (289), Expect = 2.420e-28
Identity = 62/128 (48.44%), Postives = 78/128 (60.94%), Query Frame = 1 
Query:   40 DLVEALGGLGSEVEPRMLAFQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLPSS--IPNCPSCGAERKFEFQVCPQLILHLDCDASDPDALNFATIAVFTCTNACNTTPHPPLG---AYREEFAWVQP 408
            +LV+ L G          AFQ R A APEQ +RYC   G    LW S S LP++  IP CP CGA+R+FEFQV PQL+  ++ DA DP A ++ TIAV+TC ++C+  P    G   AY EEF WVQP
Sbjct:  232 ELVDELEGAAGPAARTFAAFQARTALAPEQCLRYCFQPGA-TPLWPSASRLPAAGDIPLCPHCGAQRRFEFQVMPQLLSLMELDAEDPHAPDWGTIAVYTCPSSCSPPPVQGAGGHSAYVEEFVWVQP 358
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A7J7PKC7_9CHLO (Programmed cell death protein 2 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PKC7_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 4.730e-28
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:   40 DLVEALGGLGSEVEPRMLAFQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLP--SSIPNCPSCGAERKFEFQVCPQLILHLDCDASDPDALNFATIAVFTCTNACNTTPHPPLG---AYREEFAWVQP 408
            ++++ + G     +    AFQ R A APEQ +RYC   G  A LW S  H+P  + +P CP CGA+R+FEFQV PQL+  ++ DA DP   ++ TIAV++C  +C+ TP    G   AY EEFAWVQP
Sbjct:  232 EVLDDVEGAAGPAQQAFAAFQARTALAPEQCLRYCFQPGA-APLWPSAGHVPGPADVPPCPRCGAQRRFEFQVMPQLLSLMELDAEDPHTPDWGTIAVYSCPASCSATPVQGAGGHSAYVEEFAWVQP 358
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A7S0RG65_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RG65_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 1.790e-27
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:   97 FQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLPS--SIPNCPSCGAERKFEFQVCPQLILHLDCDASDPDALNFATIAVFTCTNACNTTPHPPLG-------AYREEFAWVQP 408
            FQ R+  APEQ +RYC   G    LW S S+LPS   IP CP CG  RKFEFQV PQL+ HL  D  D DAL+++T+AV+TC  +C+    P +         Y EE+ WVQP
Sbjct:   41 FQARVECAPEQCIRYCFQDGA-GPLWPSPSNLPSPNDIPACPRCGKARKFEFQVMPQLLNHLGQDEGDRDALDWSTLAVYTCAGSCSLAAAPKVAHAVQGGSTYLEEYVWVQP 152
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A1Y1HV96_KLENI (Putative programmed cell death protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HV96_KLENI)

HSP 1 Score: 111 bits (277), Expect = 9.810e-26
Identity = 59/132 (44.70%), Postives = 82/132 (62.12%), Query Frame = 1 
Query:   25 KLEQKDLVEALGGL---GSEVEPRMLAFQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLPSS--IPNCPSCGAERKFEFQVCPQLILHLDCDASDPDALNFATIAVFTCTNACNTTPHPPLGAYREEFAWVQ 405
            +  ++DL EA  G+   G + + +  AF+ R+A APEQV+RYCR   +   LW S  H PS   IP CP CG+ER FEFQV PQL+ ++  D+SDP+ L++ TIAV+TC  +C         AY+EE  W+Q
Sbjct:  531 EFSEEDLEEAEAGMRDMGGD-KKQWAAFEARLAAAPEQVLRYCR-SPDAKPLWPSSDHRPSEKGIPPCPECGSERIFEFQVLPQLLYYMHVDSSDPETLDWGTIAVYTCGKSCKGKE-----AYQEEVVWLQ 655
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A024UNI6_9STRA (MYND-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNI6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.720e-25
Identity = 59/137 (43.07%), Postives = 75/137 (54.74%), Query Frame = 1 
Query:   28 LEQKDLVEALGGLGSEVEPRMLAFQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLPSSIPNCPSCGAERKFEFQVCPQLILHLDCDASDP-----------DALNFATIAVFTCTNACNTTPHPPLGAYREEFAWVQ 405
            + QKDL  AL G    V+   LAF  R+A A +QV+RYCRW  +DAVLW   +  P+ IP C SCGA R FEFQV PQL+ HL     D              L++ T+ V+TC N+C+   H  +    EEF W Q
Sbjct:  286 ISQKDL-SALLGSSPAVDKTYLAFLTRVALAKDQVLRYCRWNEQDAVLWVHSNDRPAEIPACSSCGAPRLFEFQVMPQLLYHLKLAGDDSIESLAATTNAKRELDWGTLVVYTCPNSCSQGRHDTVDLV-EEFVWRQ 420
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A2P6TGK3_CHLSO (Programmed cell death 2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGK3_CHLSO)

HSP 1 Score: 108 bits (269), Expect = 3.740e-25
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:   43 LVEALGGLGSEVEPRMLAFQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLPSS--IPNCPSCGAERKFEFQVCPQLILHLDCDASDPDALNFATIAVFTCTNACNT--TPH---PPLGAYREEFAWVQP 408
            LV+ L    S  +    AFQ R+ + P Q +RYC +      LW S  H+P++  IP C  CGA R+FEFQV PQLI+HL   A DP A ++ TIAV++C+ +C++  TP    P   AY EEF WVQP
Sbjct:  282 LVDELEERVSPEQRHFAAFQARVGKEPAQCLRYC-FDAAARPLWPSSKHIPAAGDIPPCEHCGAPRQFEFQVMPQLIVHLGAPADDPSAPDWGTIAVYSCSASCSSGVTPGASLPEESAYLEEFVWVQP 409
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A418AWV1_9STRA (PDCD2_C domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AWV1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.060e-25
Identity = 59/137 (43.07%), Postives = 75/137 (54.74%), Query Frame = 1 
Query:   28 LEQKDLVEALGGLGSEVEPRMLAFQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLPSSIPNCPSCGAERKFEFQVCPQLILHLDCDASDP-----------DALNFATIAVFTCTNACNTTPHPPLGAYREEFAWVQ 405
            + QKDL  AL G    V+   LAF  R+A A +QV+RYCRW  +DAVLW   +  P+ IP C SCGA R FEFQV PQL+ HL     D              L++ T+ V+TC N+C+   H  +    EEF W Q
Sbjct:  259 ISQKDL-SALLGSSPAVDKSYLAFLTRVALAKDQVLRYCRWNEQDAVLWVHSNDRPAEIPACSSCGAPRLFEFQVMPQLLYHLKLAGDDSIESLAATTNAKRELDWGTLVVYTCPNSCSQGRHDTVDLV-EEFVWRQ 393
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A5J4XE66_9CHLO (PDCD2_C domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XE66_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 1.010e-23
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 1 
Query:   70 SEVEPRMLAFQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLPS--SIPNCPSCGAERKFEFQVCPQLILHLDCDASDPDALNFATIAVFTCTNACNTTPHPPLGAYREEFAWVQ 405
            +E + +   F   +A AP Q +RYC   G  A LW S  HLP+   IP CP CG  R+FEFQV PQL+ H+D DA DP+  ++  IAV++C  +C+        AY EEF WVQ
Sbjct:  241 TEDDRQFAHFAAVVAEAPGQCLRYCFDEGA-APLWPSCKHLPTPEDIPPCPHCGTPRRFEFQVLPQLLHHMDLDAEDPEGPDWGCIAVYSCPKSCSNFVSTDKSAYTEEFVWVQ 353
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A7R9T0U0_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T0U0_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 1.300e-23
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1 
Query:    1 DGDGDGDAKLEQKDLVEALGGLGSEVEPRMLAFQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLPSS--IPNCPSCGAERKFEFQVCPQLILHLDCDASDPDALNFATIAVFTCTNACNTTP----HPPLGAYREEFAWVQP 408
            DGD  GD   E+ D +EA   +  E   ++  F + +   PEQV+RYC   G    LW S +H P++  IP+C  CGA RKFEFQ+ P +I  L  DA    AL+F +IAV+TC+ +C            GAY EE+  V P
Sbjct:    7 DGDVGGDMTAEEIDAIEAA--VVDEDMEQLATFHVMLKNDPEQVLRYCPEPGAKP-LWPSVTHAPNTDNIPHCERCGAPRKFEFQILPTIISQLGVDAESDSALDFGSIAVYTCSKSCAPVACDEGDDRTGAYAEEYVLVHP 145
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BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Match: A0A699Z709_HAELA (PDCD2_C domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z709_HAELA)

HSP 1 Score: 99.8 bits (247), Expect = 2.080e-23
Identity = 53/108 (49.07%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:   97 FQLRIARAPEQVVRYCRWGGEDAVLWTSDSHLPSS--IPNCPSCGAERKFEFQVCPQLILHLDCDASDPDALNFATIAVFTCTNACNTTPHPPL--GAYREEFAWVQP 408
            FQ R+A AP+QVVRYC   G    LW      PS+  IP CP CG  R+FEFQV PQL+ HL  D  D DAL++ T+AV++C+ +C+T         AY EEF W QP
Sbjct:  101 FQARMALAPDQVVRYCFQPGAHP-LWPRPEPQPSTADIPACPLCGKPRQFEFQVLPQLLNHLGQDDLDDDALDWGTLAVYSCSASCSTEALEAQTGSAYAEEFVWAQP 207
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92177.21344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A383WJL6_TETOB2.420e-2848.44PDCD2_C domain-containing protein n=1 Tax=Tetrades... [more]
A0A7J7PKC7_9CHLO4.730e-2845.31Programmed cell death protein 2 n=1 Tax=Scenedesmu... [more]
A0A7S0RG65_9CHLO1.790e-2748.67Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A1Y1HV96_KLENI9.810e-2644.70Putative programmed cell death protein n=1 Tax=Kle... [more]
A0A024UNI6_9STRA1.720e-2543.07MYND-type domain-containing protein n=1 Tax=Aphano... [more]
A0A2P6TGK3_CHLSO3.740e-2544.96Programmed cell death 2 n=1 Tax=Chlorella sorokini... [more]
A0A418AWV1_9STRA5.060e-2543.07PDCD2_C domain-containing protein n=1 Tax=Aphanomy... [more]
A0A5J4XE66_9CHLO1.010e-2344.74PDCD2_C domain-containing protein n=1 Tax=Trebouxi... [more]
A0A7R9T0U0_9CHLO1.300e-2340.14Hypothetical protein n=1 Tax=Ostreococcus sp. 'luc... [more]
A0A699Z709_HAELA2.080e-2349.07PDCD2_C domain-containing protein (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92177contigM-pyrifera_M_contig92177:71..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue4e-21
Seed eggNOG ortholog157072.XP_008863848.1
Preferred namePDCD2
KEGG koko:K14801
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006417,GO:0006725,GO:0006807,GO:0006915,GO:0006919,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0008284,GO:0009790,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010608,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0016070,GO:0016072,GO:0017145,GO:0019222,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022613,GO:0030097,GO:0030154,GO:0030162,GO:0030490,GO:0031323,GO:0031325,GO:0031326,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0035162,GO:0042127,GO:0042254,GO:0042274,GO:0042981,GO:0043021,GO:0043024,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0044703,GO:0044877,GO:0045595,GO:0045862,GO:0046483,GO:0046872,GO:0046914,GO:0048103,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048568,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051301,GO:0051336,GO:0051345,GO:0051704,GO:0052547,GO:0052548,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0072091,GO:0080090,GO:0090304,GO:1901360,GO:1901532,GO:1902033,GO:1902035,GO:1903706,GO:1903708,GO:2000026,GO:2000112,GO:2000116,GO:2000648,GO:2000765,GO:2001056
EggNOG free text desc.positive regulation of hematopoietic stem cell proliferation
EggNOG OGsKOG2061@1,KOG2061@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816835.0654523-CDS-M-pyrifera_M_contig92177:70..4871622816835.0654523-CDS-M-pyrifera_M_contig92177:70..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92177 71..487 +
1692278206.4184053-CDS-M-pyrifera_M_contig92177:70..4871692278206.4184053-CDS-M-pyrifera_M_contig92177:70..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92177 71..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92177.21344.1prot_M-pyrifera_M_contig92177.21344.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92177 71..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92177.21344.1

>prot_M-pyrifera_M_contig92177.21344.1 ID=prot_M-pyrifera_M_contig92177.21344.1|Name=mRNA_M-pyrifera_M_contig92177.21344.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
DGDGDGDAKLEQKDLVEALGGLGSEVEPRMLAFQLRIARAPEQVVRYCRW
GGEDAVLWTSDSHLPSSIPNCPSCGAERKFEFQVCPQLILHLDCDASDPD
ALNFATIAVFTCTNACNTTPHPPLGAYREEFAWVQPDE*
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mRNA from alignment at M-pyrifera_M_contig92177:71..487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92177.21344.1 ID=mRNA_M-pyrifera_M_contig92177.21344.1|Name=mRNA_M-pyrifera_M_contig92177.21344.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig92177:71..487+ (Macrocystis pyrifera P11B4 male)
GATGGAGATGGAGATGGAGATGCAAAGTTGGAGCAAAAGGATTTGGTGGA
GGCGTTGGGGGGTTTGGGAAGCGAAGTTGAGCCTAGGATGTTGGCGTTTC
AGCTCAGAATCGCCAGGGCACCGGAGCAAGTGGTGCGGTATTGCAGATGG
GGTGGGGAAGACGCTGTATTGTGGACTTCAGACAGTCACCTCCCATCCTC
CATCCCCAACTGCCCTTCCTGTGGCGCAGAGCGAAAATTCGAATTCCAAG
TATGCCCCCAACTCATCCTGCACCTCGACTGTGACGCATCCGACCCCGAT
GCCCTCAATTTCGCCACAATCGCAGTCTTCACATGCACCAACGCATGCAA
CACCACACCCCACCCCCCTCTGGGGGCCTACCGAGAAGAGTTTGCGTGGG
TGCAGCCCGATGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92177:71..487+

>mRNA_M-pyrifera_M_contig92177.21344.1 ID=mRNA_M-pyrifera_M_contig92177.21344.1|Name=mRNA_M-pyrifera_M_contig92177.21344.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig92177:71..487+ (Macrocystis pyrifera P11B4 male)
GATGGAGATGGAGATGGAGATGCAAAGTTGGAGCAAAAGGATTTGGTGGA
GGCGTTGGGGGGTTTGGGAAGCGAAGTTGAGCCTAGGATGTTGGCGTTTC
AGCTCAGAATCGCCAGGGCACCGGAGCAAGTGGTGCGGTATTGCAGATGG
GGTGGGGAAGACGCTGTATTGTGGACTTCAGACAGTCACCTCCCATCCTC
CATCCCCAACTGCCCTTCCTGTGGCGCAGAGCGAAAATTCGAATTCCAAG
TATGCCCCCAACTCATCCTGCACCTCGACTGTGACGCATCCGACCCCGAT
GCCCTCAATTTCGCCACAATCGCAGTCTTCACATGCACCAACGCATGCAA
CACCACACCCCACCCCCCTCTGGGGGCCTACCGAGAAGAGTTTGCGTGGG
TGCAGCCCGATGAATGAGATGGAGATGGAGATGGAGATGCAAAGTTGGAG
CAAAAGGATTTGGTGGAGGCGTTGGGGGGTTTGGGAAGCGAAGTTGAGCC
TAGGATGTTGGCGTTTCAGCTCAGAATCGCCAGGGCACCGGAGCAAGTGG
TGCGGTATTGCAGATGGGGTGGGGAAGACGCTGTATTGTGGACTTCAGAC
AGTCACCTCCCATCCTCCATCCCCAACTGCCCTTCCTGTGGCGCAGAGCG
AAAATTCGAATTCCAAGTATGCCCCCAACTCATCCTGCACCTCGACTGTG
ACGCATCCGACCCCGATGCCCTCAATTTCGCCACAATCGCAGTCTTCACA
TGCACCAACGCATGCAACACCACACCCCACCCCCCTCTGGGGGCCTACCG
AGAAGAGTTTGCGTGGGTGCAGCCCGATGAATGA
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