mRNA_M-pyrifera_M_contig92156.21338.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92156.21338.1
Unique NamemRNA_M-pyrifera_M_contig92156.21338.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92156.21338.1 vs. uniprot
Match: A0A849HWN8_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A849HWN8_9GAMM)

HSP 1 Score: 134 bits (338), Expect = 1.990e-34
Identity = 84/266 (31.58%), Postives = 147/266 (55.26%), Query Frame = 1 
Query:    1 IKNKDAVTTGDALLAIIAVCRKYTKVLDNIIRIREQHP-EESADSFRKKTSNTNQLSQLHQIIDSTHLHMNQMANNILGASESGLENYD--SAVINQQIIRQLDATIASLETAYTGKARSFTVVLNEFELLSVQFKSKLDLDVQSGDYVSSEASAGSESGNTGPEC-------ENQRMVYVRLFHRNMINLLSPRGALNWMRAVLESVKHSEKHGLAVYAHEEEVKRSLRGENYGYLTVRIEDEQDISEQRAPRHDEQLDCPLLTI 768
            ++ +D +T  +AL A   +  KY  +L  +++IR   P  E   +FR   S+ + + QL+++++     ++ +   ++ A +   E      A I ++++  LDA +      Y   + +F ++L E  LL+      L L ++ G++   EA +G       PE         ++++V+VR+F+R M  L S +G L+W++ +L+SVKH+EKHG AVY HE +  +SL+G+ YGY+T++I+  QDIS QR  + D  L C LLTI
Sbjct:    7 LQEQDTITLAEALNASQQLVEKYLPMLHRVMQIRATTPVSEDEQTFRSAQSSKSAVPQLYEMLERFGQAVSNLQAVLIRADQLAAEEEQRLDAQIYEKLLNMLDAAVQHCNNIYAEHSTTFAMILKELVLLN----DTLHLKLKVGNWGVVEADSGDSVVTNNPENTPELVVNSDEKLVFVRVFYRKMATLNSGKGHLHWLKPLLDSVKHAEKHGFAVYEHEADAIKSLKGDAYGYVTLKIKSTQDISAQRPSKVDPVLGCRLLTI 268
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BLAST of mRNA_M-pyrifera_M_contig92156.21338.1 vs. uniprot
Match: A0A2E3MJD0_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MJD0_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 2.100e-31
Identity = 67/174 (38.51%), Postives = 107/174 (61.49%), Query Frame = 1 
Query:  250 LENYDSAVINQQIIRQLDATIASLETAYTGKARSFTVVLNEFELLSVQFKSKLDLDVQSGDYVSSEASAGSESGNTGPECENQRM-VYVRLFHRNMINLLSPRGALNWMRAVLESVKHSEKHGLAVYAHEEEVKRSLRGENYGYLTVRIEDEQDISEQRAPRHDEQLDCPLLTI 768
            +E++D   +N+++I+ LD  I   E AY G +RSF V+L++ E L +    KL L     + V ++A+    + N   + E ++  VYVRLFH++M  L SP  A  W++ + ES+K +EKHGLA+Y  E+  ++SL+ + YGY+ V I  EQDI+++R P+ D    C LLT+
Sbjct:    3 IEDWDDPKVNRKLIQFLDEAIQGCEQAYEGHSRSFAVILSDLEKLRMICGEKLSLS----EGVPAKATTERTAVNLATQAELEKQTVYVRLFHKDMTTLNSPNPATGWIKPLFESIKLAEKHGLAIYEDEDNARKSLKDDRYGYVEVTIMPEQDITDKRPPKQDTAQGCTLLTV 172
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BLAST of mRNA_M-pyrifera_M_contig92156.21338.1 vs. uniprot
Match: A0A2E2TL40_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E2TL40_9GAMM)

HSP 1 Score: 124 bits (310), Expect = 2.550e-30
Identity = 86/260 (33.08%), Postives = 137/260 (52.69%), Query Frame = 1 
Query:    1 IKNKDAVTTGDALLAIIAVCRKYTKVLDNIIRIREQHPEESADS-FRKKTSNTNQLSQLHQIIDSTHLHMNQMANNILGASESGLE-NYDSAVINQQ--IIRQLDATIASLETAYTGKARSFTVVLNEFELLSVQFKSKLDLDVQSGDYVSSEASAGSESGNTGPECENQRMVYVRLFHRNMINLLSPRGALNWMRAVLESVKHSEKHGLAVYAHEEEVKRSLRGENYGYLTVRIEDEQDISEQRAPRHDEQLDCPLLTI 768
            + ++DA+T  DAL A++    +Y  + D ++ I+   P +S DS FR++     + +Q HQ  D   L        I    E     N+   V   Q  ++  LD  I +++  Y GKA SF  VLN+   L    +       Q+ +  +      S++ +      N + VYVR+FHR M  L +P    +W++++L+SV H+EKHG  VYA EE+V +SL+ + YGY+T++I +EQDI+ QR  +    + CPLLTI
Sbjct:   12 LASQDAITLQDALNALLNYIHRYQSLFDRMLNIQANMPVQSTDSGFRRQ-----RFTQSHQYQDIQKLLQKFQTYLIKFEREQACTLNHPERVDEYQKMLLSALDKYIKAVKHIYQGKATSFASVLNDALALQNLLEHYFLNPSQATEANTPTTETLSQTVSNHQLNNNSKYVYVRIFHRLMPTLATPNANFSWIKSLLDSVTHAEKHGFGVYAEEEDVVKSLKDDQYGYITLQINEEQDITAQRPEKICPIVGCPLLTI 266
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92156.21338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A849HWN8_9GAMM1.990e-3431.58Uncharacterized protein n=1 Tax=Legionellales bact... [more]
A0A2E3MJD0_9GAMM2.100e-3138.51Uncharacterized protein n=1 Tax=Legionellales bact... [more]
A0A2E2TL40_9GAMM2.550e-3033.08Uncharacterized protein n=1 Tax=Legionellales bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92156contigM-pyrifera_M_contig92156:1..768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.7791522-CDS-M-pyrifera_M_contig92156:0..7681622816834.7791522-CDS-M-pyrifera_M_contig92156:0..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92156 1..768 -
1692278206.23643-CDS-M-pyrifera_M_contig92156:0..7681692278206.23643-CDS-M-pyrifera_M_contig92156:0..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92156 1..768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92156.21338.1prot_M-pyrifera_M_contig92156.21338.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92156 1..768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92156.21338.1

>prot_M-pyrifera_M_contig92156.21338.1 ID=prot_M-pyrifera_M_contig92156.21338.1|Name=mRNA_M-pyrifera_M_contig92156.21338.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=256bp
IKNKDAVTTGDALLAIIAVCRKYTKVLDNIIRIREQHPEESADSFRKKTS
NTNQLSQLHQIIDSTHLHMNQMANNILGASESGLENYDSAVINQQIIRQL
DATIASLETAYTGKARSFTVVLNEFELLSVQFKSKLDLDVQSGDYVSSEA
SAGSESGNTGPECENQRMVYVRLFHRNMINLLSPRGALNWMRAVLESVKH
SEKHGLAVYAHEEEVKRSLRGENYGYLTVRIEDEQDISEQRAPRHDEQLD
CPLLTI
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mRNA from alignment at M-pyrifera_M_contig92156:1..768-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92156.21338.1 ID=mRNA_M-pyrifera_M_contig92156.21338.1|Name=mRNA_M-pyrifera_M_contig92156.21338.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig92156:1..768- (Macrocystis pyrifera P11B4 male)
ATAAAAAATAAAGATGCAGTGACGACAGGAGACGCCCTGCTTGCAATTAT
TGCTGTGTGCCGCAAATATACCAAAGTGTTAGACAACATTATCCGCATTC
GTGAGCAACATCCAGAAGAGTCTGCAGATTCGTTTAGAAAAAAAACATCA
AATACGAATCAATTGTCGCAGCTACATCAAATTATCGATAGCACACACTT
GCACATGAATCAGATGGCTAACAACATCTTAGGAGCCAGTGAATCTGGAT
TAGAGAACTATGATAGCGCAGTTATTAATCAACAAATCATTCGTCAGCTG
GATGCGACTATTGCCAGCTTGGAAACCGCGTACACAGGTAAAGCGCGCAG
TTTTACGGTGGTCTTGAATGAGTTCGAATTATTGTCAGTTCAATTTAAAA
GCAAACTAGACTTGGATGTGCAAAGTGGTGATTATGTCTCCAGTGAAGCA
AGTGCAGGTTCGGAGTCAGGTAATACTGGGCCCGAGTGCGAAAATCAGCG
CATGGTCTATGTGCGCTTGTTTCACCGCAATATGATTAATTTACTGTCTC
CAAGAGGCGCATTAAATTGGATGCGAGCAGTACTGGAATCGGTCAAACAC
TCAGAAAAGCATGGCCTGGCAGTTTATGCGCATGAGGAAGAGGTCAAAAG
AAGTCTACGTGGCGAGAATTACGGCTATTTGACGGTGCGTATTGAGGATG
AGCAAGACATCTCAGAGCAGCGTGCACCACGGCATGATGAACAGTTAGAT
TGCCCTTTATTGACAATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92156:1..768-

>mRNA_M-pyrifera_M_contig92156.21338.1 ID=mRNA_M-pyrifera_M_contig92156.21338.1|Name=mRNA_M-pyrifera_M_contig92156.21338.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1536bp|location=Sequence derived from alignment at M-pyrifera_M_contig92156:1..768- (Macrocystis pyrifera P11B4 male)
ATAAAAAATAAAGATGCAGTGACGACAGGAGACGCCCTGCTTGCAATTAT
TGCTGTGTGCCGCAAATATACCAAAGTGTTAGACAACATTATCCGCATTC
GTGAGCAACATCCAGAAGAGTCTGCAGATTCGTTTAGAAAAAAAACATCA
AATACGAATCAATTGTCGCAGCTACATCAAATTATCGATAGCACACACTT
GCACATGAATCAGATGGCTAACAACATCTTAGGAGCCAGTGAATCTGGAT
TAGAGAACTATGATAGCGCAGTTATTAATCAACAAATCATTCGTCAGCTG
GATGCGACTATTGCCAGCTTGGAAACCGCGTACACAGGTAAAGCGCGCAG
TTTTACGGTGGTCTTGAATGAGTTCGAATTATTGTCAGTTCAATTTAAAA
GCAAACTAGACTTGGATGTGCAAAGTGGTGATTATGTCTCCAGTGAAGCA
AGTGCAGGTTCGGAGTCAGGTAATACTGGGCCCGAGTGCGAAAATCAGCG
CATGGTCTATGTGCGCTTGTTTCACCGCAATATGATTAATTTACTGTCTC
CAAGAGGCGCATTAAATTGGATGCGAGCAGTACTGGAATCGGTCAAACAC
TCAGAAAAGCATGGCCTGGCAGTTTATGCGCATGAGGAAGAGGTCAAAAG
AAGTCTACGTGGCGAGAATTACGGCTATTTGACGGTGCGTATTGAGGATG
AGCAAGACATCTCAGAGCAGCGTGCACCACGGCATGATGAACAGTTAGAT
TGCCCTTTATTGACAATAATAAAAAATAAAGATGCAGTGACGACAGGAGA
CGCCCTGCTTGCAATTATTGCTGTGTGCCGCAAATATACCAAAGTGTTAG
ACAACATTATCCGCATTCGTGAGCAACATCCAGAAGAGTCTGCAGATTCG
TTTAGAAAAAAAACATCAAATACGAATCAATTGTCGCAGCTACATCAAAT
TATCGATAGCACACACTTGCACATGAATCAGATGGCTAACAACATCTTAG
GAGCCAGTGAATCTGGATTAGAGAACTATGATAGCGCAGTTATTAATCAA
CAAATCATTCGTCAGCTGGATGCGACTATTGCCAGCTTGGAAACCGCGTA
CACAGGTAAAGCGCGCAGTTTTACGGTGGTCTTGAATGAGTTCGAATTAT
TGTCAGTTCAATTTAAAAGCAAACTAGACTTGGATGTGCAAAGTGGTGAT
TATGTCTCCAGTGAAGCAAGTGCAGGTTCGGAGTCAGGTAATACTGGGCC
CGAGTGCGAAAATCAGCGCATGGTCTATGTGCGCTTGTTTCACCGCAATA
TGATTAATTTACTGTCTCCAAGAGGCGCATTAAATTGGATGCGAGCAGTA
CTGGAATCGGTCAAACACTCAGAAAAGCATGGCCTGGCAGTTTATGCGCA
TGAGGAAGAGGTCAAAAGAAGTCTACGTGGCGAGAATTACGGCTATTTGA
CGGTGCGTATTGAGGATGAGCAAGACATCTCAGAGCAGCGTGCACCACGG
CATGATGAACAGTTAGATTGCCCTTTATTGACAATA
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