mRNA_M-pyrifera_M_contig92151.21336.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92151.21336.1
Unique NamemRNA_M-pyrifera_M_contig92151.21336.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: A0A2D4TG60_9GAMM (Sodium:solute symporter n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D4TG60_9GAMM)

HSP 1 Score: 478 bits (1230), Expect = 7.520e-166
Identity = 249/256 (97.27%), Postives = 252/256 (98.44%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPLIV 768
            APWIIG AGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAK+DFV+LKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGL WRRMNRHAAFASMLGGVTTFVVVSEL RLEIVTMP F+DPLIV
Sbjct:  192 APWIIGAAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKNDFVVLKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLQWRRMNRHAAFASMLGGVTTFVVVSELTRLEIVTMPGFIDPLIV 447          
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: A0A4R1BI89_9ACTN (Sodium:solute symporter family protein n=2 Tax=Rubrobacter taiwanensis TaxID=185139 RepID=A0A4R1BI89_9ACTN)

HSP 1 Score: 353 bits (906), Expect = 1.670e-118
Identity = 176/256 (68.75%), Postives = 214/256 (83.59%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPLIV 768
            AP I+   GF  +R L+DS PGYWT+AG   RP+ F++SQFLVW++F +CTPA+VSRVFPAK+DFVIL+AA  G+FL   +QIPVF+AAS MRV++PGIE  DRVMIVAFLEHVP VLGG+GLAALMAAIMSTASTLFVLAGFGLSRDLYENLRS+ ISERHRMI SR  Q+++G++V  IAIA+PAAIYW+SI+AGA+F VGWLPT+VAGL WRRMN  AA  SML GV +F+ ++EL   E+V +P F+DPL+V
Sbjct:   66 APIIMAQVGFADMRALSDSYPGYWTIAGAEGRPLGFSLSQFLVWVLFFTCTPALVSRVFPAKNDFVILRAAIIGIFLVPFMQIPVFLAASAMRVLEPGIEETDRVMIVAFLEHVPAVLGGVGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSERISERHRMIVSRTAQVIVGLVVAAIAIAQPAAIYWISIWAGALFAVGWLPTVVAGLEWRRMNAKAAMVSMLVGVVSFIGITELVNREMVALPLFLDPLMV 321          
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: UPI001F571BCD (sodium:solute symporter family protein n=1 Tax=Aestuariivivens sp. S-DT1-15 TaxID=2913557 RepID=UPI001F571BCD)

HSP 1 Score: 347 bits (890), Expect = 2.210e-114
Identity = 166/254 (65.35%), Postives = 215/254 (84.65%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPL 762
            APW+I  AGF  +++L+++  GYWTLAGT +RP+SFT SQFLVWI+F +CTPA+VSRVFPAK+DFVILK+   GVFLA+ +QIP+F+AASGM+VI PGIE  D VMI+AFLEHVP VLGG+GLAALMAAIMST STLFV+AGFGLSRDLY+NL+ + ISE+  M  +R+ QL+IG IV  IAI+RPAAIYW+SIYAGA+FGVGWLP+++AGL W+RMN  AA  SM+ GV +F+ ++EL+++ ++T+P+ +DPL
Sbjct:  192 APWLIHKAGFTEMKSLSNTLEGYWTLAGTQNRPLSFTFSQFLVWIVFFTCTPALVSRVFPAKNDFVILKSTLIGVFLAAFMQIPIFLAASGMQVIQPGIEQTDSVMIIAFLEHVPSVLGGIGLAALMAAIMSTTSTLFVIAGFGLSRDLYQNLKKETISEKKLMKVNRIAQLIIGAIVAGIAISRPAAIYWISIYAGALFGVGWLPSVIAGLEWKRMNHKAAITSMVLGVLSFICITELEKINLITLPNLLDPL 445          
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: UPI001CFE12C8 (sodium:solute symporter family protein n=1 Tax=Alkalihalobacillus hwajinpoensis TaxID=208199 RepID=UPI001CFE12C8)

HSP 1 Score: 331 bits (849), Expect = 3.360e-108
Identity = 162/256 (63.28%), Postives = 205/256 (80.08%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPLIV 768
            AP IIG AGFE ++ L+D+ P YW++ G   RP+ +TISQFLVWI+F SCTPA+VSRVFPAK+DFV+LKAA  GVF A  +Q+ VFIAA GM+V+ PGIE  DRVM+V FLEHVP +LGGLGLA LMA+IMSTASTLFVL GF L+RDLYENLR++P++E+  +   R  Q+V+  +V  IAI+RP+AIYW+SIYAGA+FGVGWLPT++AGL W+RMN  AA ASML GVT F++V EL   EI+T+P  +D L++
Sbjct:  192 APIIIGKAGFEEMKALSDTIPFYWSIEGANQRPLGWTISQFLVWILFFSCTPALVSRVFPAKNDFVVLKAAVIGVFFAPFMQVIVFIAAGGMQVLQPGIENTDRVMVVGFLEHVPDILGGLGLAGLMASIMSTASTLFVLVGFALARDLYENLRTKPVTEKQSLRIGRWAQVVVAFVVCAIAISRPSAIYWISIYAGAIFGVGWLPTVIAGLEWKRMNSKAAIASMLSGVTVFILVKELATREIITLPVHIDALMI 447          
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: UPI001FD3FD28 (sodium:solute symporter family protein n=1 Tax=Halobacillus sp. SSBR10-3 TaxID=2932257 RepID=UPI001FD3FD28)

HSP 1 Score: 330 bits (847), Expect = 6.730e-108
Identity = 161/256 (62.89%), Postives = 206/256 (80.47%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPLIV 768
            AP+IIG AGFE ++ L+D+ P YWT+ G  +RP+ ++ISQFLVWI+F SCTPA+VSRVFPAK+DFVILKAA  GVF A  +Q+ VFIAA GMRV+ PGIE  D VMI+ FLE VP VLGG+GLA LMA+IMSTASTLFVL GF L+RDLYENLR +P+SE+  +   R  Q+V+G++V +IA++RP+AIYW+SIYAGA+FGVGWLPT++AGL WRRMN  AA +SML GV +F+V+SEL    I+ +P  +D L++
Sbjct:  192 APFIIGKAGFEEMKALSDTIPLYWTIEGAKERPLGWSISQFLVWILFFSCTPALVSRVFPAKNDFVILKAAVIGVFFAPFMQVVVFIAAGGMRVLQPGIENTDNVMIIGFLEQVPDVLGGIGLAGLMASIMSTASTLFVLVGFALARDLYENLRKEPLSEKDSLKVGRWAQVVVGIVVCLIAVSRPSAIYWISIYAGAIFGVGWLPTVIAGLEWRRMNSKAAISSMLSGVVSFIVISELASRGIIHLPVHIDALMI 447          
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: A0A4Z0GZ43_9BACI (Sodium:solute symporter family protein n=1 Tax=Halobacillus salinus TaxID=192814 RepID=A0A4Z0GZ43_9BACI)

HSP 1 Score: 325 bits (834), Expect = 6.110e-106
Identity = 159/256 (62.11%), Postives = 206/256 (80.47%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPLIV 768
            AP IIG AG E ++ L+D+ P YWT+ G  +RP+ ++ISQFLVWI+F SCTPA+VSRVFPAK+DFVILKAA  GVF A  +Q+ VF+AA GMRV+ PGIE  D VMI+ FL+HVP  LGG+GLA LMA+IMSTASTLFVL GF L+RDL+ENLR +P+SE++ +   R  Q+++GV+V +IAI+RPAAIYW+SIYAGA+FGVGWLPT++A L W+RMN  AA ASML GVT+F++VSEL    I+++P  +D L++
Sbjct:  192 APLIIGKAGLEEMKALSDTIPFYWTIEGANERPLGWSISQFLVWILFFSCTPALVSRVFPAKNDFVILKAAIIGVFFAPFMQVIVFLAAGGMRVLQPGIENTDNVMIIGFLQHVPSFLGGIGLAGLMASIMSTASTLFVLVGFALARDLFENLRKEPLSEKNSLKVGRWAQVLVGVVVCLIAISRPAAIYWISIYAGAIFGVGWLPTVIASLEWKRMNSKAAIASMLSGVTSFILVSELASRGIISLPIHIDALMI 447          
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: A0A2T4U4R0_9BACI (Sodium:solute symporter n=1 Tax=Alkalicoccus saliphilus TaxID=200989 RepID=A0A2T4U4R0_9BACI)

HSP 1 Score: 318 bits (814), Expect = 6.090e-103
Identity = 155/256 (60.55%), Postives = 199/256 (77.73%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPLIV 768
            AP IIG AGF  ++ LAD+ P YW++ G   RP+ ++ISQFLVWI+F +CTPA+VSRVFPAK+DFVILKAA  GVFLA  +Q+ VF+AA GMRV++PGIE  D VM++ FL HVP  LGG+GLA LMA+IMSTASTLFVL GF L+RDLYEN+  + +S+   ++A R  Q+++ +IV  IAIARP+AIYW+SIYAGA+F VGWLPT+V GL W+RMN  AA  SML G T+FVV+ EL R E +T+P  +D L++
Sbjct:  192 APMIIGQAGFADMKALADTIPFYWSIEGAEQRPLGWSISQFLVWILFFACTPALVSRVFPAKNDFVILKAAVIGVFLAPFMQVIVFLAAGGMRVLEPGIENTDNVMVIGFLNHVPATLGGIGLAGLMASIMSTASTLFVLTGFALARDLYENVYGKKMSDEKGLLAGRYAQIIVAIIVCAIAIARPSAIYWISIYAGAIFAVGWLPTVVGGLEWKRMNSKAAVGSMLIGTTSFVVIDELARREFITLPVHIDSLMI 447          
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: A0A419V8K4_9BACL (Sodium/pantothenate symporter n=1 Tax=Sinobaca qinghaiensis TaxID=342944 RepID=A0A419V8K4_9BACL)

HSP 1 Score: 317 bits (813), Expect = 8.850e-103
Identity = 156/256 (60.94%), Postives = 199/256 (77.73%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPLIV 768
            AP +IG AGF++++ L+++ P YWT+ G   RP+ ++ISQFLVWI+F SCTPA+VSRVFPAK+DFVILKAA  GVFLA  +Q+ VF+AA GM+VI PGIE  D VMI+ F+ HVP  LGGLGLA LMA+IMSTASTLFVL GF L+RDLYE+L  + +SE+  +   R  Q+++ V+V VIAI +PAAIYW+SIYAGA+FGVGWLPT+V GL W+RMN  AA  SML G T F+VV EL R  ++T+P  +D L+V
Sbjct:  192 APLLIGQAGFDNMKALSETIPFYWTIGGAEQRPLGWSISQFLVWILFFSCTPALVSRVFPAKNDFVILKAAVIGVFLAPFMQVIVFLAAGGMQVIQPGIETTDNVMIIGFMNHVPEALGGLGLAGLMASIMSTASTLFVLTGFALARDLYEHLFDKKLSEKRSLRVGRYAQVLVAVVVCVIAIMQPAAIYWISIYAGAIFGVGWLPTVVGGLEWKRMNSQAAIGSMLAGTTAFIVVDELVRRAVITLPIHIDSLMV 447          
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: UPI00166D821C (sodium:solute symporter family protein n=1 Tax=Caldalkalibacillus thermarum TaxID=296745 RepID=UPI00166D821C)

HSP 1 Score: 316 bits (809), Expect = 3.540e-102
Identity = 155/256 (60.55%), Postives = 199/256 (77.73%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPLIV 768
            AP IIG +GF  ++ LAD+ P YWTL G   RP+ ++ISQFLVWI+F +C PA+VSRVFPAK+DFV+LKAA  GVF A  +Q+ VFIAA  M+V+ PGI P DRVM+VAFL++VPPVLGG+GLAALMA+IMSTASTLFVL GF L+RDLYENL    ++E   +   R  Q+++ ++V +IAI RP+AIYW+SIYAGA+F VGWLPTIVAGL W+RMN  AA  SM+ GVT+F+ +SEL    I+T+P  +D L++
Sbjct:  192 APMIIGQSGFAQMKALADTIPFYWTLGGAEQRPLGWSISQFLVWILFFTCIPALVSRVFPAKNDFVLLKAAVIGVFFAPFMQVLVFIAAGAMQVLQPGITPTDRVMVVAFLDYVPPVLGGVGLAALMASIMSTASTLFVLTGFALARDLYENLFQNKLTEAESLRVGRYAQVIVAIVVCIIAIMRPSAIYWISIYAGAIFAVGWLPTIVAGLEWKRMNSKAAIVSMVAGVTSFISISELASRGIITLPVHIDALMI 447          
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Match: UPI0005D1126F (sodium:solute symporter family protein n=1 Tax=Bacillus alveayuensis TaxID=279215 RepID=UPI0005D1126F)

HSP 1 Score: 311 bits (798), Expect = 1.220e-101
Identity = 153/256 (59.77%), Postives = 202/256 (78.91%), Query Frame = 1
Query:    1 APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSCTPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIEPADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLYENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVFGVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDFVDPLIV 768
            AP IIG AG  +I+ LA++ P YWT+ GT  RPI ++ISQFLVWI+F +CTPA+VSRVFPAK+DFV+LK+A  GVF A  +Q+ VF+AAS M+V+ PGIEPADRVM+V F+++VP  LGG+GLA LMA+IMSTASTLFVL GF L+RDL E+L ++ +SE   MI  R+ Q+V+GVIV VIAIA+P++IYW+S+Y+GA+F VGWLPT+VA L WRRMN  AA  SML GV +FV   E+ +   +T+P+ +D L++
Sbjct:  104 APMIIGQAGLTNIKELAETIPYYWTIGGTEQRPIGWSISQFLVWILFFTCTPALVSRVFPAKNDFVVLKSAVIGVFFAPFMQLLVFLAASAMQVLQPGIEPADRVMVVGFMDYVPNFLGGVGLAGLMASIMSTASTLFVLTGFALARDLIEHLGNKQLSEEKGMIIGRLSQVVVGVIVCVIAIAQPSSIYWISVYSGAIFAVGWLPTVVASLEWRRMNSKAAIGSMLAGVVSFVGTDEMAKRGFITLPENIDSLMI 359          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92151.21336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4TG60_9GAMM7.520e-16697.27Sodium:solute symporter n=1 Tax=Haliea sp. TaxID=1... [more]
A0A4R1BI89_9ACTN1.670e-11868.75Sodium:solute symporter family protein n=2 Tax=Rub... [more]
UPI001F571BCD2.210e-11465.35sodium:solute symporter family protein n=1 Tax=Aes... [more]
UPI001CFE12C83.360e-10863.28sodium:solute symporter family protein n=1 Tax=Alk... [more]
UPI001FD3FD286.730e-10862.89sodium:solute symporter family protein n=1 Tax=Hal... [more]
A0A4Z0GZ43_9BACI6.110e-10662.11Sodium:solute symporter family protein n=1 Tax=Hal... [more]
A0A2T4U4R0_9BACI6.090e-10360.55Sodium:solute symporter n=1 Tax=Alkalicoccus salip... [more]
A0A419V8K4_9BACL8.850e-10360.94Sodium/pantothenate symporter n=1 Tax=Sinobaca qin... [more]
UPI00166D821C3.540e-10260.55sodium:solute symporter family protein n=1 Tax=Cal... [more]
UPI0005D1126F1.220e-10159.77sodium:solute symporter family protein n=1 Tax=Bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92151contigM-pyrifera_M_contig92151:3..770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score312.8
Seed ortholog evalue1.5e-82
Seed eggNOG ortholog1121085.AUCI01000028_gene2339
Preferred namepanF
KEGG koko:K14392
KEGG TC2.A.21.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sodium:solute symporter family
EggNOG OGs1U4V1@1239,1ZDG7@1386,4IEK3@91061,COG0591@1,COG0591@2
COG Functional cat.E
Best tax levelBacillus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size768
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.7178795-CDS-M-pyrifera_M_contig92151:2..7701622816834.7178795-CDS-M-pyrifera_M_contig92151:2..770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92151 3..770 +
1692278206.208491-CDS-M-pyrifera_M_contig92151:2..7701692278206.208491-CDS-M-pyrifera_M_contig92151:2..770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92151 3..770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92151.21336.1prot_M-pyrifera_M_contig92151.21336.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92151 3..770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92151.21336.1

>prot_M-pyrifera_M_contig92151.21336.1 ID=prot_M-pyrifera_M_contig92151.21336.1|Name=mRNA_M-pyrifera_M_contig92151.21336.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=256bp
APWIIGVAGFESIRNLADSAPGYWTLAGTADRPISFTISQFLVWIIFMSC
TPAIVSRVFPAKDDFVILKAAAYGVFLASLLQIPVFIAASGMRVIDPGIE
PADRVMIVAFLEHVPPVLGGLGLAALMAAIMSTASTLFVLAGFGLSRDLY
ENLRSQPISERHRMIASRVGQLVIGVIVIVIAIARPAAIYWMSIYAGAVF
GVGWLPTIVAGLHWRRMNRHAAFASMLGGVTTFVVVSELKRLEIVTMPDF
VDPLIV
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mRNA from alignment at M-pyrifera_M_contig92151:3..770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92151.21336.1 ID=mRNA_M-pyrifera_M_contig92151.21336.1|Name=mRNA_M-pyrifera_M_contig92151.21336.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig92151:3..770+ (Macrocystis pyrifera P11B4 male)
GCCCCCTGGATTATCGGCGTAGCCGGCTTCGAAAGTATCCGCAACCTGGC CGACAGTGCGCCGGGGTACTGGACGCTCGCGGGCACGGCTGACAGGCCGA TATCATTCACGATCTCACAGTTTCTCGTCTGGATCATTTTCATGAGCTGC ACGCCCGCCATCGTTTCTCGGGTGTTCCCGGCCAAGGATGACTTCGTGAT TCTCAAGGCCGCCGCCTACGGTGTCTTCCTGGCCTCGCTACTGCAGATAC CCGTGTTCATCGCGGCGAGCGGCATGCGGGTCATCGACCCCGGAATCGAG CCCGCGGACCGGGTCATGATCGTGGCGTTCCTCGAGCACGTGCCACCAGT GCTCGGTGGTCTGGGCCTTGCTGCACTCATGGCTGCCATCATGTCGACGG CGTCAACACTGTTCGTGCTCGCCGGCTTCGGCCTCTCGCGCGACCTTTAC GAGAACTTGAGGTCGCAACCCATCAGCGAACGTCACCGCATGATCGCCAG CCGGGTCGGTCAGCTCGTGATCGGTGTGATCGTAATCGTCATAGCGATTG CACGCCCGGCTGCCATCTACTGGATGTCGATATATGCGGGCGCCGTCTTC GGCGTCGGCTGGCTACCAACGATCGTTGCGGGCCTGCATTGGCGCCGCAT GAATCGCCATGCGGCGTTTGCGAGCATGCTTGGTGGTGTTACTACATTCG TCGTTGTGAGTGAACTGAAGAGGCTGGAAATCGTTACGATGCCGGACTTT GTCGACCCGCTCATCGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92151:3..770+

>mRNA_M-pyrifera_M_contig92151.21336.1 ID=mRNA_M-pyrifera_M_contig92151.21336.1|Name=mRNA_M-pyrifera_M_contig92151.21336.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1536bp|location=Sequence derived from alignment at M-pyrifera_M_contig92151:3..770+ (Macrocystis pyrifera P11B4 male)
GCCCCCTGGATTATCGGCGTAGCCGGCTTCGAAAGTATCCGCAACCTGGC
CGACAGTGCGCCGGGGTACTGGACGCTCGCGGGCACGGCTGACAGGCCGA
TATCATTCACGATCTCACAGTTTCTCGTCTGGATCATTTTCATGAGCTGC
ACGCCCGCCATCGTTTCTCGGGTGTTCCCGGCCAAGGATGACTTCGTGAT
TCTCAAGGCCGCCGCCTACGGTGTCTTCCTGGCCTCGCTACTGCAGATAC
CCGTGTTCATCGCGGCGAGCGGCATGCGGGTCATCGACCCCGGAATCGAG
CCCGCGGACCGGGTCATGATCGTGGCGTTCCTCGAGCACGTGCCACCAGT
GCTCGGTGGTCTGGGCCTTGCTGCACTCATGGCTGCCATCATGTCGACGG
CGTCAACACTGTTCGTGCTCGCCGGCTTCGGCCTCTCGCGCGACCTTTAC
GAGAACTTGAGGTCGCAACCCATCAGCGAACGTCACCGCATGATCGCCAG
CCGGGTCGGTCAGCTCGTGATCGGTGTGATCGTAATCGTCATAGCGATTG
CACGCCCGGCTGCCATCTACTGGATGTCGATATATGCGGGCGCCGTCTTC
GGCGTCGGCTGGCTACCAACGATCGTTGCGGGCCTGCATTGGCGCCGCAT
GAATCGCCATGCGGCGTTTGCGAGCATGCTTGGTGGTGTTACTACATTCG
TCGTTGTGAGTGAACTGAAGAGGCTGGAAATCGTTACGATGCCGGACTTT
GTCGACCCGCTCATCGTTGCCCCCTGGATTATCGGCGTAGCCGGCTTCGA
AAGTATCCGCAACCTGGCCGACAGTGCGCCGGGGTACTGGACGCTCGCGG
GCACGGCTGACAGGCCGATATCATTCACGATCTCACAGTTTCTCGTCTGG
ATCATTTTCATGAGCTGCACGCCCGCCATCGTTTCTCGGGTGTTCCCGGC
CAAGGATGACTTCGTGATTCTCAAGGCCGCCGCCTACGGTGTCTTCCTGG
CCTCGCTACTGCAGATACCCGTGTTCATCGCGGCGAGCGGCATGCGGGTC
ATCGACCCCGGAATCGAGCCCGCGGACCGGGTCATGATCGTGGCGTTCCT
CGAGCACGTGCCACCAGTGCTCGGTGGTCTGGGCCTTGCTGCACTCATGG
CTGCCATCATGTCGACGGCGTCAACACTGTTCGTGCTCGCCGGCTTCGGC
CTCTCGCGCGACCTTTACGAGAACTTGAGGTCGCAACCCATCAGCGAACG
TCACCGCATGATCGCCAGCCGGGTCGGTCAGCTCGTGATCGGTGTGATCG
TAATCGTCATAGCGATTGCACGCCCGGCTGCCATCTACTGGATGTCGATA
TATGCGGGCGCCGTCTTCGGCGTCGGCTGGCTACCAACGATCGTTGCGGG
CCTGCATTGGCGCCGCATGAATCGCCATGCGGCGTTTGCGAGCATGCTTG
GTGGTGTTACTACATTCGTCGTTGTGAGTGAACTGAAGAGGCTGGAAATC
GTTACGATGCCGGACTTTGTCGACCCGCTCATCGTT
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