mRNA_M-pyrifera_M_contig92116.21331.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92116.21331.1
Unique NamemRNA_M-pyrifera_M_contig92116.21331.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: A0A5A8ECF5_CAFRO (TYR_PHOSPHATASE_2 domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8ECF5_CAFRO)

HSP 1 Score: 115 bits (287), Expect = 1.650e-30
Identity = 56/99 (56.57%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFGKGGSGKEGGKAKGAIAVHCVAGLGRAPVLV 300
            PTDR+VEAY+REY  +  ++LVR C  TY  +RV   GI VHEL +PDG PPP+ +IDAWL++C+  F      K G K   A+ VHCVAGLGRAPVLV
Sbjct:   26 PTDRNVEAYVREYKAHHVSHLVRTCDPTYALTRVKAEGIVVHELAYPDGDPPPERVIDAWLEVCNTAF------KGGNKDGKAVTVHCVAGLGRAPVLV 118
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: A0A2H9TGN4_9FUNG (Uncharacterized protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TGN4_9FUNG)

HSP 1 Score: 107 bits (267), Expect = 4.320e-27
Identity = 54/99 (54.55%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFGKGGSGKEGGKAKGAIAVHCVAGLGRAPVLV 300
            P+D +++ Y+RE  K+G T +VR C  TY   RV Q GI+VHE+ FPDG  PPD I+ AW+ L + TF      KEG  +  AIAVHCVAGLGRAPVLV
Sbjct:   62 PSDGNIDLYLRELKKHGVTEIVRVCDPTYSRERVEQQGIRVHEMLFPDGDAPPDSIVSAWMTLVETTF------KEG--SHDAIAVHCVAGLGRAPVLV 152
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: A0A7S0MTS6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MTS6_9CRYP)

HSP 1 Score: 103 bits (257), Expect = 9.260e-26
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFG-------------KGGSGKEGGKAKGAIAVHCVAGLGRAPVLV 300
            P + +V  YI+E L  G  ++VR C  TY    + +AGI VH+  +PDG PPPD IID+WLDL  +TF              K  S  +G   KG IA+HC+AGLGRAPVLV
Sbjct:   27 PNESNVHHYIKELLAQGVKHVVRVCEPTYSMKSMEEAGIHVHDWPYPDGDPPPDQIIDSWLDLTHSTFSGEQSKSKIVRVLSKAASSSKGTSDKGIIAIHCIAGLGRAPVLV 138
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: K3X7X2_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X7X2_GLOUD)

HSP 1 Score: 101 bits (252), Expect = 3.310e-25
Identity = 53/99 (53.54%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFGKGGSGKEGGKAKGAIAVHCVAGLGRAPVLV 300
            P D ++  Y++E  K+  T+LVRAC  TY    V  AGI VHEL FPDG PP  DI+D WLDL    F      K   K+  +IAVHCVAGLGRAPVLV
Sbjct:   24 PNDSNLHLYLKELKKHNVTDLVRACEVTYSRESVEAAGIHVHELEFPDGEPPDGDILDKWLDLVSDCFK---DNKIDSKSNKSIAVHCVAGLGRAPVLV 119
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: A0A8K1FCX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCX2_PYTOL)

HSP 1 Score: 100 bits (250), Expect = 6.630e-25
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFGKGGSGKEGGKAKGAIAVHCVAGLGRAPVLV 300
            P + ++  Y++E  K   T LVRAC  TY    V  AGI+VHE+ FPDG PP  +I+D WLDL   TF      K G ++  +IAVHCVAGLGRAPVLV
Sbjct:   24 PNNSNLHLYLKELKKYNVTELVRACEVTYGREGVEAAGIRVHEMEFPDGEPPDAEILDKWLDLVSETFK---DNKAGSRSNKSIAVHCVAGLGRAPVLV 119
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: A0A2C6KXK6_9APIC (Protein tyrosine phosphatase (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KXK6_9APIC)

HSP 1 Score: 107 bits (266), Expect = 7.200e-25
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFGKGGSGKEGGKAKGAIAVHCVAGLGRAPVLV 300
            P+  ++ AYI E      T+LVR C  TYD + V  AGI+ HEL FPDG  PPDD+ID WLDLCDA            + KGAIAVHCVAGLGRAPVLV
Sbjct:  627 PSHENLAAYIAEMKAFEVTDLVRTCEPTYDEAVVHAAGIQTHELIFPDGEAPPDDVIDEWLDLCDAVS----------QRKGAIAVHCVAGLGRAPVLV 715
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: A0A024UJZ6_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UJZ6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 7.360e-25
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFGKGGSGKEGGKAKG-AIAVHCVAGLGRAPVLV 300
            P D ++  YI+E+ K   T++VRAC  TY  S V  AG K+HE+ FPDG PP  +II+ WLDL + TF        G       IAVHCVAGLGRAPVLV
Sbjct:   24 PNDTNLPLYIKEFKKYQVTDIVRACEPTYSRSTVETAGFKLHEMEFPDGEPPSGEIINQWLDLVETTFKDNAKQNAGNNTNDKTIAVHCVAGLGRAPVLV 123
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: A0A2D4C6K3_PYTIN (Protein tyrosine phosphatase type IVA protein 1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6K3_PYTIN)

HSP 1 Score: 99.8 bits (247), Expect = 1.880e-24
Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFGKGGSGKEGGKAKGAIAVHCVAGLGRAPVLV 300
            P D ++  Y++E  K+  T+LVRAC  TY+ + V  AGI+VHEL FPDG PP  +I+D WLDL           K   K   AIAVHCVAGLGRAPVLV
Sbjct:   24 PNDSNLHLYLKELKKHNVTDLVRACEVTYNRTAVEAAGIRVHELEFPDGEPPDAEILDQWLDLVSDVLK---DNKLDSKNNKAIAVHCVAGLGRAPVLV 119
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: A0A0G4EMY1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EMY1_VITBC)

HSP 1 Score: 99.0 bits (245), Expect = 3.770e-24
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFGKGGSGKEGGKAKGAIAVHCVAGLGRAPVLV 300
            P + ++ AYI+E  + G T+LVR C  TY    + Q+GI+ HEL FPDG PPPD +I  W+ L + T       ++ G  K A+AVHCVAGLGRAPVLV
Sbjct:   24 PNNDNLNAYIKEMRQFGVTDLVRTCEATYSDEILEQSGIRTHELLFPDGEPPPDHVIKEWMSLVNDT-------QKRGNEKSAVAVHCVAGLGRAPVLV 115
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BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Match: A0A485KIA3_9STRA (Aste57867_5759 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIA3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 8.350e-24
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    4 PTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDGAPPPDDIIDAWLDLCDATFGKGGSGKEGGKAKG-AIAVHCVAGLGRAPVLV 300
            P D ++  Y++E+ K   T++VRAC  TY  + V  AG ++HE+ FPDG PP  +II+ WLDL + TF        G       IAVHCVAGLGRAPVLV
Sbjct:   24 PNDTNLPLYVKEFKKYQVTDIVRACESTYSCTSVESAGFRLHEMEFPDGDPPSAEIINQWLDLVETTFKDNSKVNAGNNPNDKTIAVHCVAGLGRAPVLV 123
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92116.21331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8ECF5_CAFRO1.650e-3056.57TYR_PHOSPHATASE_2 domain-containing protein n=3 Ta... [more]
A0A2H9TGN4_9FUNG4.320e-2754.55Uncharacterized protein n=1 Tax=Paramicrosporidium... [more]
A0A7S0MTS6_9CRYP9.260e-2646.43Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
K3X7X2_GLOUD3.310e-2553.54Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A8K1FCX2_PYTOL6.630e-2551.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2C6KXK6_9APIC7.200e-2556.57Protein tyrosine phosphatase (Fragment) n=1 Tax=Cy... [more]
A0A024UJZ6_9STRA7.360e-2551.00Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A2D4C6K3_PYTIN1.880e-2452.53Protein tyrosine phosphatase type IVA protein 1 n=... [more]
A0A0G4EMY1_VITBC3.770e-2449.49Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A485KIA3_9STRA8.350e-2448.00Aste57867_5759 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92116contigM-pyrifera_M_contig92116:287..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue2e-22
Seed eggNOG ortholog42099.EPrPV00000021634
Preferred namePTP4A2
KEGG koko:K01104,ko:K18041
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001667,GO:0003008,GO:0003013,GO:0003018,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0004727,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005768,GO:0005769,GO:0005773,GO:0005783,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006355,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0008015,GO:0008138,GO:0008150,GO:0008152,GO:0009889,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010631,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0016020,GO:0016311,GO:0016477,GO:0016787,GO:0016788,GO:0016791,GO:0018995,GO:0019219,GO:0019222,GO:0019538,GO:0020016,GO:0020023,GO:0023051,GO:0023052,GO:0023056,GO:0030334,GO:0030335,GO:0030430,GO:0031323,GO:0031326,GO:0031410,GO:0031910,GO:0031982,GO:0032501,GO:0032879,GO:0032880,GO:0033643,GO:0033646,GO:0034097,GO:0035335,GO:0036211,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042578,GO:0042995,GO:0043114,GO:0043117,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043412,GO:0043542,GO:0043656,GO:0043657,GO:0043687,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051252,GO:0051270,GO:0051272,GO:0051674,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070062,GO:0070201,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0080090,GO:0090130,GO:0090132,GO:0090287,GO:0097708,GO:0098552,GO:0098562,GO:0120025,GO:0120038,GO:0140096,GO:1900746,GO:1901222,GO:1901224,GO:1901564,GO:1902531,GO:1902533,GO:1902547,GO:1903506,GO:1903561,GO:1904951,GO:1990823,GO:1990830,GO:2000112,GO:2000145,GO:2000147,GO:2001141
EggNOG free text desc.Protein tyrosine phosphatase type IVA protein 1. Source PGD
EggNOG OGs1MDFX@121069,KOG2836@1,KOG2836@2759
EC3.1.3.48
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.4725804-CDS-M-pyrifera_M_contig92116:286..4151622816834.4725804-CDS-M-pyrifera_M_contig92116:286..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92116 287..415 +
1692278206.0626023-CDS-M-pyrifera_M_contig92116:286..4151692278206.0626023-CDS-M-pyrifera_M_contig92116:286..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92116 287..415 +
1622816834.4847662-CDS-M-pyrifera_M_contig92116:596..7671622816834.4847662-CDS-M-pyrifera_M_contig92116:596..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92116 597..767 +
1692278206.0852215-CDS-M-pyrifera_M_contig92116:596..7671692278206.0852215-CDS-M-pyrifera_M_contig92116:596..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92116 597..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92116.21331.1prot_M-pyrifera_M_contig92116.21331.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92116 287..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92116.21331.1

>prot_M-pyrifera_M_contig92116.21331.1 ID=prot_M-pyrifera_M_contig92116.21331.1|Name=mRNA_M-pyrifera_M_contig92116.21331.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
QPTDRHVEAYIREYLKNGATNLVRACHGTYDASRVSQAGIKVHELGFPDG
APPPDDIIDAWLDLCDATFGKGGSGKEGGKAKGAIAVHCVAGLGRAPVLV
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mRNA from alignment at M-pyrifera_M_contig92116:287..767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92116.21331.1 ID=mRNA_M-pyrifera_M_contig92116.21331.1|Name=mRNA_M-pyrifera_M_contig92116.21331.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=481bp|location=Sequence derived from alignment at M-pyrifera_M_contig92116:287..767+ (Macrocystis pyrifera P11B4 male)
CAGCCAACGGATCGACATGTAGAGGCGTATATTCGAGAATATCTGAAGAA
TGGTGCTACAAACCTCGTGAGAGCATGCCATGGGACTTATGACGCTTCAA
GAGTGTCGCAAGCAGGAATTAAAGTCCATGTAAGTAGGGGGAACAGGGGG
GATGGTGGGAGGAGAGGGGCTTTGGGGTGGTGTTTGGGAGTTGTTGTTGT
TGGTTGTGGGGTATTTGGAGTTGATTTTTGCCTTTCGTTTTCAATCACCT
TTTCTTATCTGGATTCTCTGCAAACCTCCCTCTTCTTCACCCTTTTCTCT
GTTCTTGTAGGAGTTGGGTTTTCCTGATGGCGCTCCTCCGCCTGACGATA
TCATTGACGCATGGTTGGATTTGTGTGACGCTACGTTTGGGAAGGGCGGG
AGTGGGAAGGAAGGGGGCAAAGCGAAAGGAGCGATCGCAGTGCATTGCGT
GGCTGGGTTGGGGAGAGCGCCAGTGTTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92116:287..767+

>mRNA_M-pyrifera_M_contig92116.21331.1 ID=mRNA_M-pyrifera_M_contig92116.21331.1|Name=mRNA_M-pyrifera_M_contig92116.21331.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig92116:287..767+ (Macrocystis pyrifera P11B4 male)
CAGCCAACGGATCGACATGTAGAGGCGTATATTCGAGAATATCTGAAGAA
TGGTGCTACAAACCTCGTGAGAGCATGCCATGGGACTTATGACGCTTCAA
GAGTGTCGCAAGCAGGAATTAAAGTCCATCAGCCAACGGATCGACATGTA
GAGGCGTATATTCGAGAATATCTGAAGAATGGTGCTACAAACCTCGTGAG
AGCATGCCATGGGACTTATGACGCTTCAAGAGTGTCGCAAGCAGGAATTA
AAGTCCATGAGTTGGGTTTTCCTGATGGCGCTCCTCCGCCTGACGATATC
ATTGACGCATGGTTGGATTTGTGTGACGCTACGTTTGGGAAGGGCGGGAG
TGGGAAGGAAGGGGGCAAAGCGAAAGGAGCGATCGCAGTGCATTGCGTGG
CTGGGTTGGGGAGAGCGCCAGTGTTGGTGGAGTTGGGTTTTCCTGATGGC
GCTCCTCCGCCTGACGATATCATTGACGCATGGTTGGATTTGTGTGACGC
TACGTTTGGGAAGGGCGGGAGTGGGAAGGAAGGGGGCAAAGCGAAAGGAG
CGATCGCAGTGCATTGCGTGGCTGGGTTGGGGAGAGCGCCAGTGTTGGTG
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