mRNA_M-pyrifera_M_contig9211.21329.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9211.21329.1
Unique NamemRNA_M-pyrifera_M_contig9211.21329.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9211.21329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9211contigM-pyrifera_M_contig9211:8008..8330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size325
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.3976898-UTR-M-pyrifera_M_contig9211:8007..80151622816834.3976898-UTR-M-pyrifera_M_contig9211:8007..8015Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9211 8008..8015 +
1692278206.0260632-UTR-M-pyrifera_M_contig9211:8007..80151692278206.0260632-UTR-M-pyrifera_M_contig9211:8007..8015Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9211 8008..8015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.4107592-CDS-M-pyrifera_M_contig9211:8015..83301622816834.4107592-CDS-M-pyrifera_M_contig9211:8015..8330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9211 8016..8330 +
1692278206.037289-CDS-M-pyrifera_M_contig9211:8015..83301692278206.037289-CDS-M-pyrifera_M_contig9211:8015..8330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9211 8016..8330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9211.21329.1prot_M-pyrifera_M_contig9211.21329.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9211 8016..8330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9211.21329.1

>prot_M-pyrifera_M_contig9211.21329.1 ID=prot_M-pyrifera_M_contig9211.21329.1|Name=mRNA_M-pyrifera_M_contig9211.21329.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MHGRSRMTIDARIPTMPGRSTSGLHGPGQRCFGELVGLKKILTMTRLSPE
LARSLESTPRGKDDTRIKRINICTVLWSVLGAWALHIDTSEQGISLYECA
CYRAP
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mRNA from alignment at M-pyrifera_M_contig9211:8008..8330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9211.21329.1 ID=mRNA_M-pyrifera_M_contig9211.21329.1|Name=mRNA_M-pyrifera_M_contig9211.21329.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=323bp|location=Sequence derived from alignment at M-pyrifera_M_contig9211:8008..8330+ (Macrocystis pyrifera P11B4 male)
CTCATGTCATGCATGGCCGTAGTCGTATGACCATAGACGCTCGCATTCCT
ACAATGCCCGGACGGAGCACATCGGGTCTTCACGGACCAGGCCAACGTTG
CTTTGGAGAGTTGGTGGGGTTAAAAAAGATTCTAACGATGACTCGGCTGA
GCCCAGAGCTCGCTAGGTCCCTCGAGTCCACGCCGCGAGGAAAAGACGAT
ACTCGTATAAAGCGTATAAATATATGTACTGTATTATGGAGCGTGCTTGG
CGCTTGGGCTCTGCACATCGACACGTCAGAGCAGGGTATAAGTTTATACG
AATGTGCATGCTATCGGGCACCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9211:8008..8330+

>mRNA_M-pyrifera_M_contig9211.21329.1 ID=mRNA_M-pyrifera_M_contig9211.21329.1|Name=mRNA_M-pyrifera_M_contig9211.21329.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig9211:8008..8330+ (Macrocystis pyrifera P11B4 male)
ATGCATGGCCGTAGTCGTATGACCATAGACGCTCGCATTCCTACAATGCC
CGGACGGAGCACATCGGGTCTTCACGGACCAGGCCAACGTTGCTTTGGAG
AGTTGGTGGGGTTAAAAAAGATTCTAACGATGACTCGGCTGAGCCCAGAG
CTCGCTAGGTCCCTCGAGTCCACGCCGCGAGGAAAAGACGATACTCGTAT
AAAGCGTATAAATATATGTACTGTATTATGGAGCGTGCTTGGCGCTTGGG
CTCTGCACATCGACACGTCAGAGCAGGGTATAAGTTTATACGAATGTGCA
TGCTATCGGGCACCGATGCATGGCCGTAGTCGTATGACCATAGACGCTCG
CATTCCTACAATGCCCGGACGGAGCACATCGGGTCTTCACGGACCAGGCC
AACGTTGCTTTGGAGAGTTGGTGGGGTTAAAAAAGATTCTAACGATGACT
CGGCTGAGCCCAGAGCTCGCTAGGTCCCTCGAGTCCACGCCGCGAGGAAA
AGACGATACTCGTATAAAGCGTATAAATATATGTACTGTATTATGGAGCG
TGCTTGGCGCTTGGGCTCTGCACATCGACACGTCAGAGCAGGGTATAAGT
TTATACGAATGTGCATGCTATCGGGCACCG
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