mRNA_M-pyrifera_M_contig92106.21326.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92106.21326.1
Unique NamemRNA_M-pyrifera_M_contig92106.21326.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92106.21326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92106contigM-pyrifera_M_contig92106:46..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.265789-CDS-M-pyrifera_M_contig92106:45..2661622816834.265789-CDS-M-pyrifera_M_contig92106:45..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92106 46..266 +
1692278205.960667-CDS-M-pyrifera_M_contig92106:45..2661692278205.960667-CDS-M-pyrifera_M_contig92106:45..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92106 46..266 +
1622816834.2803497-CDS-M-pyrifera_M_contig92106:347..5311622816834.2803497-CDS-M-pyrifera_M_contig92106:347..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92106 348..531 +
1692278205.9714215-CDS-M-pyrifera_M_contig92106:347..5311692278205.9714215-CDS-M-pyrifera_M_contig92106:347..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92106 348..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92106.21326.1prot_M-pyrifera_M_contig92106.21326.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92106 46..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92106.21326.1

>prot_M-pyrifera_M_contig92106.21326.1 ID=prot_M-pyrifera_M_contig92106.21326.1|Name=mRNA_M-pyrifera_M_contig92106.21326.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
NLHLRKAVDLATLILRPHPSPTSTTPSTPALYIRKTDQVFETFVVRTLQK
CLADHFTVIHRGRKKLPTKLSSDLAEPDFVILDKEEQLLAVGDAKFKSGS
DVQMADRWQFLSYSSLWKVPLIAVYLCGDGMVSTY
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mRNA from alignment at M-pyrifera_M_contig92106:46..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92106.21326.1 ID=mRNA_M-pyrifera_M_contig92106.21326.1|Name=mRNA_M-pyrifera_M_contig92106.21326.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig92106:46..531+ (Macrocystis pyrifera P11B4 male)
AATCTGCACCTCCGCAAGGCAGTTGACCTTGCGACCCTCATCCTCCGGCC
GCATCCCTCCCCAACGTCCACCACTCCTTCCACCCCTGCGCTCTACATAC
GAAAAACCGACCAAGTCTTTGAAACCTTTGTCGTCCGCACACTTCAAAAG
TGTCTCGCTGATCACTTTACAGTGATCCACAGAGGCCGCAAGAAGCTTCC
TACAAAGCTCTCCAGTGACCTGTTGGGAGATGAAGGAGGAGGAGGAGAAG
GGGAAGGAGGAGGAGGAGGAGAAGGAGGGAAGAGGAAGGGGAAGTCGTGG
AGGGCTGAGCCAGATTTTGTGATTTTGGATAAAGAAGAGCAGTTGTTGGC
AGTGGGTGATGCCAAGTTCAAGTCGGGAAGCGACGTTCAAATGGCCGATC
GTTGGCAGTTTCTATCTTACTCTTCCCTGTGGAAGGTTCCCTTGATTGCT
GTTTACCTTTGCGGAGATGGAATGGTCTCTACCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92106:46..531+

>mRNA_M-pyrifera_M_contig92106.21326.1 ID=mRNA_M-pyrifera_M_contig92106.21326.1|Name=mRNA_M-pyrifera_M_contig92106.21326.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig92106:46..531+ (Macrocystis pyrifera P11B4 male)
AATCTGCACCTCCGCAAGGCAGTTGACCTTGCGACCCTCATCCTCCGGCC
GCATCCCTCCCCAACGTCCACCACTCCTTCCACCCCTGCGCTCTACATAC
GAAAAACCGACCAAGTCTTTGAAACCTTTGTCGTCCGCACACTTCAAAAG
TGTCTCGCTGATCACTTTACAGTGATCCACAGAGGCCGCAAGAAGCTTCC
TACAAAGCTCTCCAGTGACCTAATCTGCACCTCCGCAAGGCAGTTGACCT
TGCGACCCTCATCCTCCGGCCGCATCCCTCCCCAACGTCCACCACTCCTT
CCACCCCTGCGCTCTACATACGAAAAACCGACCAAGTCTTTGAAACCTTT
GTCGTCCGCACACTTCAAAAGTGTCTCGCTGATCACTTTACAGTGATCCA
CAGAGGCCGCAAGAAGCTTCCTACAAAGCTCTCCAGTGACCTGGCTGAGC
CAGATTTTGTGATTTTGGATAAAGAAGAGCAGTTGTTGGCAGTGGGTGAT
GCCAAGTTCAAGTCGGGAAGCGACGTTCAAATGGCCGATCGTTGGCAGTT
TCTATCTTACTCTTCCCTGTGGAAGGTTCCCTTGATTGCTGTTTACCTTT
GCGGAGATGGAATGGTCTCTACCTACGGCTGAGCCAGATTTTGTGATTTT
GGATAAAGAAGAGCAGTTGTTGGCAGTGGGTGATGCCAAGTTCAAGTCGG
GAAGCGACGTTCAAATGGCCGATCGTTGGCAGTTTCTATCTTACTCTTCC
CTGTGGAAGGTTCCCTTGATTGCTGTTTACCTTTGCGGAGATGGAATGGT
CTCTACCTAC
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