mRNA_M-pyrifera_M_contig92090.21319.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92090.21319.1
Unique NamemRNA_M-pyrifera_M_contig92090.21319.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92090.21319.1 vs. uniprot
Match: W8ZG31_9BACL (Phosphoesterase PA-phosphatase related protein n=4 Tax=unclassified Paenibacillus TaxID=185978 RepID=W8ZG31_9BACL)

HSP 1 Score: 57.8 bits (138), Expect = 1.250e-6
Identity = 56/173 (32.37%), Postives = 74/173 (42.77%), Query Frame = 1 
Query:   73 GRNPLQVFGGAFVALRTHRGGKWLLGCFLFVTLTNLVQAIYDPALSEWLGYDFTYKVRAVEGAFVERVQDGVLGLPGGWQLTWVLALAYTAGYVAWLLYPAFAFQ---ALGLPRTAGSYAAAFAGNYLFALPFYLFFPVREVAWSGISGARPLLEEHFPGITAQLRLESALDN 582
            GRNPL+  G     L  +     L G  L +   N ++ I +  +      DFT  V+ +EG FVE  Q         W LT VLA  Y   + + L+     +      G   +A  YA     NYL A+PFYLF PV+EV W+        + E FP      R  S LDN
Sbjct:   27 GRNPLRAAGVFARNLAVNPRYLLLFGSLLAILFMNKLELIIESKMKHQT--DFTPFVQRLEGGFVEGFQQL---FHAAW-LTPVLAFFYVVVFQSLLVASLAVYMYRDKTGRQFSATCYAIML--NYLIAIPFYLFMPVKEV-WAYNPNVHFYMLEAFPAFETVYRGLSGLDN 190
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BLAST of mRNA_M-pyrifera_M_contig92090.21319.1 vs. uniprot
Match: A0A3D9KP30_9BACL (PAP2 superfamily protein n=2 Tax=Cohnella TaxID=329857 RepID=A0A3D9KP30_9BACL)

HSP 1 Score: 55.8 bits (133), Expect = 6.180e-6
Identity = 58/178 (32.58%), Postives = 82/178 (46.07%), Query Frame = 1 
Query:   73 GRNPLQVFGGAFVALRTHRGGKWLLGCFLFVTLTNLVQAIYDPALSEWLG--YDFTYKVRAVEGAFVERVQDGVLGLPGGWQLTWVLALAYTAGYVAWLLYPAFAFQALGLPRTAGS----YAAAFA--GNYLFALPFYLFFPVREVAWSGISGARPLLEEHFPGITAQLRLESALDN 582
            GR PL V    F AL   R  ++LL     + +  L +  Y+  L  WL   YD T  +   EGA+  ++Q     LP          + +TA +   +L+ A    + G+   AG+    YA +FA  GNYL A+PFYL+ PV E AW   S  R L+   FP      R  S ++N
Sbjct:   27 GRQPLAVGMAFFRALFQSR--QYLLVFIAVIAILFLNK--YELHLENWLNVSYDLTAALTGWEGAWQAKLQAS---LPSD------TLIGFTAIFYL-VLFQATMMASFGIYTYAGNMKLYYALSFAILGNYLLAVPFYLYVPVNE-AWYADSQIRFLMLNVFPTFEQHYRALSGINN 189
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BLAST of mRNA_M-pyrifera_M_contig92090.21319.1 vs. uniprot
Match: UPI001B28F3A2 (Inositol phosphorylceramide synthase n=2 Tax=Paenibacillaceae TaxID=186822 RepID=UPI001B28F3A2)

HSP 1 Score: 55.1 bits (131), Expect = 1.120e-5
Identity = 53/174 (30.46%), Postives = 75/174 (43.10%), Query Frame = 1 
Query:   79 NPLQVFGGAFVALRTHRGGKWLLGCFLFVTLTNLVQAIYDPALSEWLGY------DFTYKVRAVEGAFVERVQDGVLGLPGGWQLTWVLALAYTAGYVAWLLYPAFAFQALGLPRTAGSYAAAFAGNYLFALPFYLFFPVREVAWSGISGARPLLEEHFPGITAQLRLESALDN 582
            NP    G     + T R  K+LL        T ++  ++   +  WL        DFT ++ A+EG FV  +Q            T+   + +T+  +A  L+  +  Q       A  YA  F  NYL A+PFYLFFPVREV WS       L+ + FP      R  S +DN
Sbjct:   30 NPFFAAGAYVQEMFTSR--KYLLH------FTAMIAILFSNKMELWLEQHMHSRADFTDQIYALEGNFVASIQTWFRNDALTQASTFFYVVVFTSVMIASTLFYTYTKQYKLF--YAVCYALIF--NYLIAIPFYLFFPVREV-WSFHPNVSMLIHDLFPTFEQDYRPLSGIDN 190
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BLAST of mRNA_M-pyrifera_M_contig92090.21319.1 vs. uniprot
Match: A0A0D5NLQ4_9BACL (Phosphoesterase PA-phosphatase n=1 Tax=Paenibacillus beijingensis TaxID=1126833 RepID=A0A0D5NLQ4_9BACL)

HSP 1 Score: 54.3 bits (129), Expect = 2.070e-5
Identity = 61/183 (33.33%), Postives = 87/183 (47.54%), Query Frame = 1 
Query:   49 ALLAVTLPGRNPLQVFGGAFVALRTHRGGKWLLGCFLFVTLTNLVQAI-YDPALSEWLGY--DFTYKVRAVEGAFVERVQDGVLGLPGGWQLTWVLALAYTAGYVAWLLYPAFAFQALGLPRTAGSYAAAFAG--NYLFALPFYLFFPVREVAWSGISGARPLLEEHFPGITAQLRLESALDN 582
            ALL     GRNP +  G     L   R  ++L   F FV L  ++    Y+  + + + Y  DFT+ ++++EG FV   Q  +   P  W LT VLA  Y   + + L+     +  +   +    YA  +A   NYL A+PFYLFFPV+EV W+        + E FP    Q R  S LDN
Sbjct:   19 ALLIAYGTGRNPFRAAGLFIRNLFVSR--RYL---FHFVALIAILFCNKYELLIEKKMQYHADFTHAIQSMEGNFVMLFQQ-LFHTP--W-LTPVLAFFYIVVFQSLLIASIGVYTYMDKSKKL-YYATCYAVMLNYLIAIPFYLFFPVKEV-WAFNPSVHFYMLESFPDFENQYRGLSGLDN 190
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92090.21319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
W8ZG31_9BACL1.250e-632.37Phosphoesterase PA-phosphatase related protein n=4... [more]
A0A3D9KP30_9BACL6.180e-632.58PAP2 superfamily protein n=2 Tax=Cohnella TaxID=32... [more]
UPI001B28F3A21.120e-530.46Inositol phosphorylceramide synthase n=2 Tax=Paeni... [more]
A0A0D5NLQ4_9BACL2.070e-533.33Phosphoesterase PA-phosphatase n=1 Tax=Paenibacill... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92090contigM-pyrifera_M_contig92090:2..583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.0
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog1196323.ALKF01000198_gene2475
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Phosphoesterase PA-phosphatase
EggNOG OGs1VBSU@1239,26S0G@186822,4HPN8@91061,COG0671@1,COG0671@2
COG Functional cat.I
Best tax levelPaenibacillaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size582
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.8341534-CDS-M-pyrifera_M_contig92090:1..5831622816833.8341534-CDS-M-pyrifera_M_contig92090:1..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92090 2..583 -
1692278205.671423-CDS-M-pyrifera_M_contig92090:1..5831692278205.671423-CDS-M-pyrifera_M_contig92090:1..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92090 2..583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92090.21319.1prot_M-pyrifera_M_contig92090.21319.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92090 2..583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92090.21319.1

>prot_M-pyrifera_M_contig92090.21319.1 ID=prot_M-pyrifera_M_contig92090.21319.1|Name=mRNA_M-pyrifera_M_contig92090.21319.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
MHFYLHYLVFAPLLLLALLAVTLPGRNPLQVFGGAFVALRTHRGGKWLLG
CFLFVTLTNLVQAIYDPALSEWLGYDFTYKVRAVEGAFVERVQDGVLGLP
GGWQLTWVLALAYTAGYVAWLLYPAFAFQALGLPRTAGSYAAAFAGNYLF
ALPFYLFFPVREVAWSGISGARPLLEEHFPGITAQLRLESALDN
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mRNA from alignment at M-pyrifera_M_contig92090:2..583-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92090.21319.1 ID=mRNA_M-pyrifera_M_contig92090.21319.1|Name=mRNA_M-pyrifera_M_contig92090.21319.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig92090:2..583- (Macrocystis pyrifera P11B4 male)
ATGCACTTCTACCTGCACTATCTGGTGTTCGCGCCGCTCCTCCTGCTGGC
GCTCCTGGCCGTGACGCTGCCCGGGCGGAATCCATTGCAGGTGTTCGGCG
GGGCGTTCGTGGCGCTGCGCACGCATCGCGGGGGCAAGTGGCTGCTCGGG
TGCTTTCTGTTCGTGACGCTGACCAACCTGGTGCAGGCGATCTACGACCC
GGCGCTGAGCGAGTGGCTCGGGTACGACTTCACGTACAAGGTGCGGGCCG
TGGAAGGGGCGTTCGTCGAGCGCGTGCAGGACGGGGTGCTCGGGCTGCCG
GGTGGATGGCAGTTGACGTGGGTGTTGGCGCTGGCGTACACGGCCGGCTA
CGTGGCGTGGCTCTTGTATCCGGCGTTCGCGTTCCAGGCCCTGGGCCTGC
CGCGCACCGCAGGGAGCTACGCGGCGGCGTTCGCAGGCAACTACCTGTTC
GCGCTGCCCTTCTACCTGTTCTTCCCGGTGCGCGAGGTCGCGTGGTCGGG
CATCTCGGGCGCGCGGCCGCTGCTCGAGGAGCACTTCCCCGGCATCACCG
CGCAGCTGCGGCTGGAGAGCGCGCTCGACAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92090:2..583-

>mRNA_M-pyrifera_M_contig92090.21319.1 ID=mRNA_M-pyrifera_M_contig92090.21319.1|Name=mRNA_M-pyrifera_M_contig92090.21319.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig92090:2..583- (Macrocystis pyrifera P11B4 male)
ATGCACTTCTACCTGCACTATCTGGTGTTCGCGCCGCTCCTCCTGCTGGC
GCTCCTGGCCGTGACGCTGCCCGGGCGGAATCCATTGCAGGTGTTCGGCG
GGGCGTTCGTGGCGCTGCGCACGCATCGCGGGGGCAAGTGGCTGCTCGGG
TGCTTTCTGTTCGTGACGCTGACCAACCTGGTGCAGGCGATCTACGACCC
GGCGCTGAGCGAGTGGCTCGGGTACGACTTCACGTACAAGGTGCGGGCCG
TGGAAGGGGCGTTCGTCGAGCGCGTGCAGGACGGGGTGCTCGGGCTGCCG
GGTGGATGGCAGTTGACGTGGGTGTTGGCGCTGGCGTACACGGCCGGCTA
CGTGGCGTGGCTCTTGTATCCGGCGTTCGCGTTCCAGGCCCTGGGCCTGC
CGCGCACCGCAGGGAGCTACGCGGCGGCGTTCGCAGGCAACTACCTGTTC
GCGCTGCCCTTCTACCTGTTCTTCCCGGTGCGCGAGGTCGCGTGGTCGGG
CATCTCGGGCGCGCGGCCGCTGCTCGAGGAGCACTTCCCCGGCATCACCG
CGCAGCTGCGGCTGGAGAGCGCGCTCGACAACATGCACTTCTACCTGCAC
TATCTGGTGTTCGCGCCGCTCCTCCTGCTGGCGCTCCTGGCCGTGACGCT
GCCCGGGCGGAATCCATTGCAGGTGTTCGGCGGGGCGTTCGTGGCGCTGC
GCACGCATCGCGGGGGCAAGTGGCTGCTCGGGTGCTTTCTGTTCGTGACG
CTGACCAACCTGGTGCAGGCGATCTACGACCCGGCGCTGAGCGAGTGGCT
CGGGTACGACTTCACGTACAAGGTGCGGGCCGTGGAAGGGGCGTTCGTCG
AGCGCGTGCAGGACGGGGTGCTCGGGCTGCCGGGTGGATGGCAGTTGACG
TGGGTGTTGGCGCTGGCGTACACGGCCGGCTACGTGGCGTGGCTCTTGTA
TCCGGCGTTCGCGTTCCAGGCCCTGGGCCTGCCGCGCACCGCAGGGAGCT
ACGCGGCGGCGTTCGCAGGCAACTACCTGTTCGCGCTGCCCTTCTACCTG
TTCTTCCCGGTGCGCGAGGTCGCGTGGTCGGGCATCTCGGGCGCGCGGCC
GCTGCTCGAGGAGCACTTCCCCGGCATCACCGCGCAGCTGCGGCTGGAGA
GCGCGCTCGACAAC
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