mRNA_M-pyrifera_M_contig92081.21317.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92081.21317.1
Unique NamemRNA_M-pyrifera_M_contig92081.21317.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: A0A061SJ11_9CHLO (Transferase caf17 mitochondrial-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SJ11_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 1.510e-18
Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   28 PPPAVW--YSDERAPGLGVRALLPIKEAASVSDETLTPGHHTLLRYCAGVIDSH-EAPN--AIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVPV 324
            PPP  W    D R PG+G RA+LP  EA        TP  +  LR   GV +   E P+  A+PLE NL+   +I  +KGCY+GQEL ARTHFQGV+RKR++PV
Sbjct:  147 PPPGXWGWSPDPRLPGIGHRAVLPA-EAVPEGSAAATPAEYARLRMQLGVPEGDAETPSGEALPLEFNLDRLNAISYTKGCYVGQELTARTHFQGVIRKRLMPV 249          
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: G4ZCL2_PHYSP (GCV_T domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZCL2_PHYSP)

HSP 1 Score: 82.8 bits (203), Expect = 2.060e-16
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   40 VWYSDERAPGLGVRALLPIKEAASVSD--ETLTPGHHTLLRYCAGVIDSHEAPNAIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVPVS 327
            V Y+D R    GVRA++PI    S+ +  ET+    +   R   GV +  E  + IPLECNL+    +   KGCY+GQEL ART F+G +RKR+VPV+
Sbjct:  144 VVYADPRGEHFGVRAIVPIDSTLSLPEGYETMETSAYLDHRIALGVAEGKELVDGIPLECNLDLLKGVSFRKGCYVGQELTARTQFKGNIRKRLVPVA 241          
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: A0A2P4YDZ6_9STRA (Mitochondrial protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDZ6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.870e-16
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   40 VWYSDERAPGLGVRALLPIKEAASVSDETLTPGHHTLL--RYCAGVIDSHEAPNAIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVPVS 327
            V Y+D R    GVRA++P  E+ ++ +E  T      L  R   GV +  E  + IPLECNL+    +   KGCY+GQEL ART F+G +RKR+VPV+
Sbjct:  143 VVYADPRGDHFGVRAIVPADESLNMPEEYETMDTSAYLDHRIALGVAEGKELVDGIPLECNLDLMQGVSFRKGCYVGQELTARTQFKGNIRKRLVPVA 240          
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: W2R931_PHYPN (GCV_T domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2R931_PHYPN)

HSP 1 Score: 81.6 bits (200), Expect = 5.380e-16
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   40 VWYSDERAPGLGVRALLPIKEAASVSDE--TLTPGHHTLLRYCAGVIDSHEAPNAIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVPVS 327
            V Y+D R    GVRA++P  E  +V +E  T+    +   R   GV +  E  + IPLECNL+    +   KGCY+GQEL ART F+G +RKR+VP++
Sbjct:  144 VVYADPRGDHFGVRAIVPTDETFNVPEEYETMDTSDYLDHRIALGVAEGKELVDGIPLECNLDLMHGVSFRKGCYVGQELTARTQFKGNIRKRLVPMA 241          
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: A0A0C3M9X4_9AGAM (Uncharacterized protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3M9X4_9AGAM)

HSP 1 Score: 82.0 bits (201), Expect = 5.450e-16
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   37 AVWYSDERAPGLGVRALLPIKEAASVSDETLTPGHHTLLRYCAGV---IDSHEAPNAIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVPVS 327
            A+W  D RAPG+G+RALLP     + SD   +   +TL R   GV   +D     ++ P++ N++  G     KGCY+GQEL  RT+  GVVRKRVVPV+
Sbjct:  241 AIWMVDRRAPGMGIRALLPKGVKPTSSDNVASSDEYTLHRIKLGVPEGVDDIPTQDSFPMDANMDMMGGGE--KGCYVGQELTVRTYHTGVVRKRVVPVT 338          
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: A0A2P6TVT5_CHLSO (Transferase mitochondrial n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVT5_CHLSO)

HSP 1 Score: 80.9 bits (198), Expect = 5.560e-16
Identity = 50/113 (44.25%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 GDAAVASGVPPPAVWYSDERAPGLGVRALLPIKEAASVSDETLTPGHHTLLRYCAGVIDSH-EAPNA--IPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVPVSA 330
            G AA  S   P   W  D R P LG+RA+LP  E    +  +     H   R   GV +   E P+   IPLE NL+    I  +KGCY+GQEL+ARTHF+GVVRKR++P  A
Sbjct:   65 GGAAGDSSAAPSPGWLPDPRLPQLGLRAVLPRGEEGEATGGSADWEAHRRWRMLHGVAEGDSEIPSGEVIPLEFNLDGLNGISFTKGCYVGQELMARTHFKGVVRKRLMPFLA 177          
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: A0A6G0W8W6_9STRA (GCV_T domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8W6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 9.030e-16
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   31 PPAVWYSDERAPGLGVRALLPIKEAAS------VSDETLTPGHHTLLRYCAGVIDSHEAPNAIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVP 321
            P A+ Y D R+   GVRA+LP     S      V +ET    H  +L  C G+    +  + IPLE NL+    I L KGCY+GQELI+RTH++G +RKR+VP
Sbjct:  133 PDAIVYQDPRSALFGVRAILPFSATLSTPSDHDVVNETFVHDHEIVLGACGGL----DLRDGIPLEYNLDLLHGIALRKGCYVGQELISRTHYKGNIRKRIVP 231          
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: I0Z4S9_COCSC (Aminomethyltransferase folate-binding domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z4S9_COCSC)

HSP 1 Score: 80.5 bits (197), Expect = 1.800e-15
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   43 WYSDERAPGLGVRALLPIKEAASVSDETLTPGHHTLLRYCAGVID--------SHEAP-NAIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVPVSA 330
            W  D R P LG R +LP    A++         +   R+  G+ +        +H  P +AIPLE NL+   +I  +KGCY+GQELIARTHF+GVVRKR++PV++
Sbjct:  123 WPLDPRTPELGQRTILPKSAEAALELPAADQEEYRQWRHSLGIAEGPSEIPPGAHPMPWSAIPLEYNLDGLNAISFTKGCYVGQELIARTHFRGVVRKRLLPVTS 227          
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: A0A7S3DZX4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3DZX4_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 2.820e-15
Identity = 49/105 (46.67%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   46 YSDERAPGLGVRALLPIKEAASVSDETLTPG--------HHTLLRYCAGVIDSH-EAPN--AIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVPVS 327
            + D R P LG R L+    A     E  + G        H+T LRY  GV +   E P+  AIPLE N++  G I  +KGCY+GQEL ARTHFQG+VRKR+VPV+
Sbjct:  129 FRDPRHPLLGFRCLVEGGLAGDAEVEASSRGGAPSSSYSHYTGLRYALGVPEGDVEMPSGKAIPLEYNIDALGGISYTKGCYMGQELTARTHFQGLVRKRLVPVA 233          
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Match: D8LC64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC64_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.350e-15
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   46 YSDERAPGLGVRALLPIKEAASVS------DETLTPGHHTLLRYCAGVIDSHEAPNAIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGVVRKRVVPV 324
            + D R+  LGVR + P  E           D  +  G +  LR   GV +  E  ++IPLE NL+  GSI  +KGCY+GQEL ART F+G VRKRV+PV
Sbjct:  134 FPDPRSAALGVRLIRPKDETGPDGADWPDGDPVVPEGRYHALRMANGVGEGSELLDSIPLESNLDLLGSISFTKGCYVGQELTARTQFKGFVRKRVLPV 232          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92081.21317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061SJ11_9CHLO1.510e-1849.04Transferase caf17 mitochondrial-like n=1 Tax=Tetra... [more]
G4ZCL2_PHYSP2.060e-1643.88GCV_T domain-containing protein n=3 Tax=Phytophtho... [more]
A0A2P4YDZ6_9STRA3.870e-1643.88Mitochondrial protein n=1 Tax=Phytophthora palmivo... [more]
W2R931_PHYPN5.380e-1642.86GCV_T domain-containing protein n=10 Tax=Phytophth... [more]
A0A0C3M9X4_9AGAM5.450e-1644.00Uncharacterized protein n=1 Tax=Tulasnella calospo... [more]
A0A2P6TVT5_CHLSO5.560e-1644.25Transferase mitochondrial n=1 Tax=Chlorella soroki... [more]
A0A6G0W8W6_9STRA9.030e-1643.69GCV_T domain-containing protein n=1 Tax=Aphanomyce... [more]
I0Z4S9_COCSC1.800e-1541.90Aminomethyltransferase folate-binding domain-conta... [more]
A0A7S3DZX4_9CHLO2.820e-1546.67Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
D8LC64_ECTSI5.350e-1544.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92081contigM-pyrifera_M_contig92081:66..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue8.4e-14
Seed eggNOG ortholog67593.Physo129061
Preferred nameCAF17
KEGG rclassRC00002,RC00004,RC00014
KEGG koko:K01897,ko:K12613,ko:K14806,ko:K22073
KEGG TC4.C.1.1
KEGG ReactionR01280,R10815
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03018,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03018,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086,M00395
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044572,GO:0051186,GO:0070013,GO:0071840
EggNOG free text desc.Aminomethyltransferase folate-binding domain
EggNOG OGs3QA8X@4776,COG0354@1,KOG2929@2759
EC3.6.1.62,3.6.4.13,6.2.1.3
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko01009,ko03009,ko03019,ko03029,ko04147
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.7665124-CDS-M-pyrifera_M_contig92081:65..3951622816833.7665124-CDS-M-pyrifera_M_contig92081:65..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92081 66..395 +
1692278205.636656-CDS-M-pyrifera_M_contig92081:65..3951692278205.636656-CDS-M-pyrifera_M_contig92081:65..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92081 66..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92081.21317.1prot_M-pyrifera_M_contig92081.21317.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92081 66..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92081.21317.1

>prot_M-pyrifera_M_contig92081.21317.1 ID=prot_M-pyrifera_M_contig92081.21317.1|Name=mRNA_M-pyrifera_M_contig92081.21317.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
GDAAVASGVPPPAVWYSDERAPGLGVRALLPIKEAASVSDETLTPGHHTL
LRYCAGVIDSHEAPNAIPLECNLEWTGSIHLSKGCYIGQELIARTHFQGV
VRKRVVPVSA
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mRNA from alignment at M-pyrifera_M_contig92081:66..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92081.21317.1 ID=mRNA_M-pyrifera_M_contig92081.21317.1|Name=mRNA_M-pyrifera_M_contig92081.21317.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig92081:66..395+ (Macrocystis pyrifera P11B4 male)
GGAGATGCAGCTGTAGCCAGTGGAGTACCACCTCCGGCCGTGTGGTATTC AGATGAGCGTGCTCCCGGCCTGGGCGTGCGCGCGTTGCTGCCGATCAAGG AAGCTGCAAGTGTGTCGGACGAAACGCTCACCCCCGGCCATCACACGTTG CTGCGCTACTGCGCTGGTGTGATCGACAGCCACGAAGCTCCCAATGCCAT CCCTCTGGAGTGTAATCTGGAGTGGACTGGCAGTATCCACTTGTCCAAGG GGTGCTACATCGGACAGGAGCTGATTGCGCGCACGCACTTCCAAGGGGTG GTGCGCAAACGAGTGGTGCCAGTGTCTGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92081:66..395+

>mRNA_M-pyrifera_M_contig92081.21317.1 ID=mRNA_M-pyrifera_M_contig92081.21317.1|Name=mRNA_M-pyrifera_M_contig92081.21317.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig92081:66..395+ (Macrocystis pyrifera P11B4 male)
GGAGATGCAGCTGTAGCCAGTGGAGTACCACCTCCGGCCGTGTGGTATTC
AGATGAGCGTGCTCCCGGCCTGGGCGTGCGCGCGTTGCTGCCGATCAAGG
AAGCTGCAAGTGTGTCGGACGAAACGCTCACCCCCGGCCATCACACGTTG
CTGCGCTACTGCGCTGGTGTGATCGACAGCCACGAAGCTCCCAATGCCAT
CCCTCTGGAGTGTAATCTGGAGTGGACTGGCAGTATCCACTTGTCCAAGG
GGTGCTACATCGGACAGGAGCTGATTGCGCGCACGCACTTCCAAGGGGTG
GTGCGCAAACGAGTGGTGCCAGTGTCTGCAGGAGATGCAGCTGTAGCCAG
TGGAGTACCACCTCCGGCCGTGTGGTATTCAGATGAGCGTGCTCCCGGCC
TGGGCGTGCGCGCGTTGCTGCCGATCAAGGAAGCTGCAAGTGTGTCGGAC
GAAACGCTCACCCCCGGCCATCACACGTTGCTGCGCTACTGCGCTGGTGT
GATCGACAGCCACGAAGCTCCCAATGCCATCCCTCTGGAGTGTAATCTGG
AGTGGACTGGCAGTATCCACTTGTCCAAGGGGTGCTACATCGGACAGGAG
CTGATTGCGCGCACGCACTTCCAAGGGGTGGTGCGCAAACGAGTGGTGCC
AGTGTCTGCA
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