mRNA_M-pyrifera_M_contig92075.21314.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92075.21314.1
Unique NamemRNA_M-pyrifera_M_contig92075.21314.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A2E5ZJX3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5ZJX3_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 7.280e-25
Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1
Query:   43 ATTPADELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFVERTAALKSAAADSGGETE 399
            A  PA+ L+PE++EQA AMA+E+A  + +I  A    ++ANH  G YELA +H++   P++  A +A+D+LGA+VE L GRL EAE  + +ALH +RL +V    A +   A  GG T+
Sbjct:   21 AADPAEALSPEEREQAEAMAREMAAVQEQIASAPAAVVVANHLMGFYELAAIHLSQQPPNLSEASVAIDALGAVVEKLPGRLGEAESTMRDALHQIRLAYVSVEKAARDGEAPGGGGTD 139          
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A6L8H7I5_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L8H7I5_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 3.440e-24
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   58 DELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFVERTAALKSAAA 378
            D+L PE++E+A A+  ELA AR  +  A P A++ANHA G+YELA +H+T D P    ARLA+D++G LVEGL GRL E+E  L EAL  +R+ +V++T+   S AA
Sbjct:   40 DDLDPEERERAEAIMAELAAARERLAAAPPEAVVANHAMGLYELAAIHLTADPPRPAEARLAIDAMGLLVEGLAGRLGESEATLREALQSLRMGYVQQTSGDASDAA 146          
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A7Y2DLK5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DLK5_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 1.270e-23
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   37 PDATTPADELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFVERTA 357
            PD   PA+++ P Q   A AMA+EL+EARA +LEA    ++ NHA G+YELA +H+T  +PD    RLAVD+L ALVE L GRL E E  L +AL  +++ FV+R A
Sbjct:   22 PDGPDPAEDIDPAQ---AEAMAQELSEARARLLEAPVADVVVNHAIGLYELAAIHLTASEPDFDQTRLAVDALKALVENLPGRLGEGEEMLGQALSSLQIAFVQRLA 125          
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A2E1YET4_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1YET4_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 5.540e-23
Identity = 48/97 (49.48%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   58 DELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFVE 348
            D+LTPE+QEQAR MA ELAE R  + E     +IANH  GIYELA +H++N+ P + AA++A+D++ A++ GL+GRL + E  L EAL  +++ FV+
Sbjct:   33 DDLTPEEQEQARMMAAELAEVRKRLSETPAEDVIANHVMGIYELAAIHLSNEPPAVDAAKIAIDAMSAIMTGLQGRLGQNENVLREALQQIQIAFVQ 129          
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A2E4W187_9ACTN (Uncharacterized protein n=4 Tax=Actinobacteria TaxID=201174 RepID=A0A2E4W187_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 8.050e-23
Identity = 47/97 (48.45%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   58 DELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFVE 348
            D+LTPE+QEQAR MA ELAE R  + E     +IANH  GIYELA +H++N+ P + A+++A+D++ A++ GL+GRL + E  L EAL  +++ FV+
Sbjct:   33 DDLTPEEQEQARMMAAELAEVRKRLSETPAEDVIANHVMGIYELAAIHLSNEPPSLDASKIAIDAMSAILTGLQGRLGQNENVLREALQQIQVAFVQ 129          
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A6G2KNE2_9ACTN (DUF1844 domain-containing protein n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2KNE2_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 1.910e-22
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 1
Query:   43 ATTPADELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFVERTAALKSAAADSGGETE 399
            A  P   L+ E++ QA  +A++LAEAR +I     + ++ NHA G+YEL  +H++   P+++ ARLA+D+LG LVEGL+GRL E E  L +ALH +R+ FV+ + A++        ETE
Sbjct:   87 AEDPLTGLSDEERAQAEELAEQLAEAREQIANTPASVVVGNHAMGLYELGAIHLSQQPPNLEEARLAIDALGELVEGLEGRLGEHEATLKDALHQIRMAFVQVSRAMEEPTGGQSEETE 205          
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A7K2CQL0_9ACTN (DUF1844 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2CQL0_9ACTN)

HSP 1 Score: 95.5 bits (236), Expect = 2.150e-22
Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   64 LTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFVERTAALKSA---AADSGGETE 399
            L+ E++ QA  +A++LAEAR +I +   + ++ NHA G+YEL  +H++   P++  ARLA+D+LGALV+GL+GRL E E  L +ALH +R+ FV+ +  ++ +   A D  GE E
Sbjct:   39 LSDEERAQAEELAQQLAEAREQIAQTPASVVVGNHAMGLYELGAIHLSQQPPNLDEARLAIDALGALVDGLEGRLGEHEATLKDALHQIRMAFVQVSRLVEGSDDEAGDEAGEAE 153          
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A2E9LB76_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9LB76_9ACTN)

HSP 1 Score: 94.7 bits (234), Expect = 2.980e-22
Identity = 46/99 (46.46%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   58 DELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFVERT 354
            D+LTPEQQEQA+AMA ELAEAR  + +     +IANH  GIYELA +H+++D P++  A++A+D++  +V  L G+L E EG + +AL  +++ +V+ T
Sbjct:   37 DDLTPEQQEQAKAMATELAEARQRLSQTPAAEVIANHMMGIYELAAIHLSSDIPNLGEAKVAIDAMSGMVSSLDGKLGENEGVIKDALQQIQMAYVQMT 135          
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A3C2DER5_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2DER5_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 4.230e-22
Identity = 45/103 (43.69%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   37 PDATTPADELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFV 345
            P+   P + LTPE++EQA A+A+E+A  + +I  A  + ++ANH  G YELA +H++ + P++  A +A+D+LG+++E L GRL EAE  L +ALH +RL +V
Sbjct:   49 PEEPQPEETLTPEEREQAEALAREMAAVQEQIASAPASVVVANHLMGFYELAAIHLSQEPPNLSEASVAIDALGSVIEKLPGRLGEAESTLRDALHQIRLAYV 151          
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Match: A0A7K2B068_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2B068_9ACTN)

HSP 1 Score: 93.2 bits (230), Expect = 1.320e-21
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   58 DELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFGIYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHGVRLLFVERT 354
            ++L PE +E+A A+  ELA AR  +  A P  ++ANHA G+YEL  +H+T + P   AARLA+D++G LVEGL GRL ++E  L EAL  +R+++V+++
Sbjct:   38 EDLDPEDRERAEAILAELAAARERLAAAPPEVVVANHAMGLYELGAIHLTAEPPRPAAARLAIDAMGVLVEGLAGRLGDSEPTLREALQSLRMVYVQQS 136          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92075.21314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E5ZJX3_9ACTN7.280e-2543.70Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6L8H7I5_9ACTN3.440e-2450.47Uncharacterized protein n=2 Tax=Acidimicrobiia bac... [more]
A0A7Y2DLK5_9ACTN1.270e-2350.47Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A2E1YET4_9ACTN5.540e-2349.48Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A2E4W187_9ACTN8.050e-2348.45Uncharacterized protein n=4 Tax=Actinobacteria Tax... [more]
A0A6G2KNE2_9ACTN1.910e-2242.02DUF1844 domain-containing protein n=4 Tax=Acidimic... [more]
A0A7K2CQL0_9ACTN2.150e-2242.61DUF1844 domain-containing protein n=1 Tax=Acidimic... [more]
A0A2E9LB76_9ACTN2.980e-2246.46Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3C2DER5_9ACTN4.230e-2243.69Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A7K2B068_9ACTN1.320e-2146.46Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92075contigM-pyrifera_M_contig92075:249..647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.3
Seed ortholog evalue4.4e-11
Seed eggNOG ortholog1229780.BN381_290134
Hectar predicted targeting categoryother localisation
EggNOG OGs2FH85@1,2H8HQ@201174,3492H@2
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.6555626-CDS-M-pyrifera_M_contig92075:248..6201622816833.6555626-CDS-M-pyrifera_M_contig92075:248..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92075 249..620 -
1692278205.568267-CDS-M-pyrifera_M_contig92075:248..6201692278205.568267-CDS-M-pyrifera_M_contig92075:248..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92075 249..620 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.6725526-UTR-M-pyrifera_M_contig92075:620..6471622816833.6725526-UTR-M-pyrifera_M_contig92075:620..647Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92075 621..647 -
1692278205.5813015-UTR-M-pyrifera_M_contig92075:620..6471692278205.5813015-UTR-M-pyrifera_M_contig92075:620..647Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92075 621..647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92075.21314.1prot_M-pyrifera_M_contig92075.21314.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92075 249..620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92075.21314.1

>prot_M-pyrifera_M_contig92075.21314.1 ID=prot_M-pyrifera_M_contig92075.21314.1|Name=mRNA_M-pyrifera_M_contig92075.21314.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
MSNPDATTPADELTPEQQEQARAMAKELAEARAEILEADPTAIIANHAFG
IYELAMLHITNDDPDMKAARLAVDSLGALVEGLKGRLDEAEGPLNEALHG
VRLLFVERTAALKSAAADSGGETE
back to top

mRNA from alignment at M-pyrifera_M_contig92075:249..647-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92075.21314.1 ID=mRNA_M-pyrifera_M_contig92075.21314.1|Name=mRNA_M-pyrifera_M_contig92075.21314.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig92075:249..647- (Macrocystis pyrifera P11B4 male)
GAAGAACCCCTCGGTATCCTCTCGCAGATGAGCAATCCAGACGCCACCAC TCCCGCCGACGAACTCACCCCCGAGCAGCAGGAGCAGGCTCGGGCCATGG CCAAGGAGCTCGCCGAGGCGCGAGCCGAGATCCTCGAGGCCGACCCGACC GCCATCATCGCCAACCATGCGTTCGGCATCTACGAACTGGCGATGCTGCA CATCACCAACGACGATCCCGACATGAAGGCCGCCCGGCTGGCCGTCGACT CACTCGGCGCGCTGGTCGAGGGGCTCAAGGGTCGGCTCGACGAAGCAGAG GGTCCTCTCAACGAAGCGCTCCACGGCGTGCGCCTGCTGTTCGTCGAGCG AACCGCGGCCCTGAAATCGGCAGCAGCCGACAGCGGTGGCGAGACCGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig92075:249..647-

>mRNA_M-pyrifera_M_contig92075.21314.1 ID=mRNA_M-pyrifera_M_contig92075.21314.1|Name=mRNA_M-pyrifera_M_contig92075.21314.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig92075:249..647- (Macrocystis pyrifera P11B4 male)
ATGAGCAATCCAGACGCCACCACTCCCGCCGACGAACTCACCCCCGAGCA
GCAGGAGCAGGCTCGGGCCATGGCCAAGGAGCTCGCCGAGGCGCGAGCCG
AGATCCTCGAGGCCGACCCGACCGCCATCATCGCCAACCATGCGTTCGGC
ATCTACGAACTGGCGATGCTGCACATCACCAACGACGATCCCGACATGAA
GGCCGCCCGGCTGGCCGTCGACTCACTCGGCGCGCTGGTCGAGGGGCTCA
AGGGTCGGCTCGACGAAGCAGAGGGTCCTCTCAACGAAGCGCTCCACGGC
GTGCGCCTGCTGTTCGTCGAGCGAACCGCGGCCCTGAAATCGGCAGCAGC
CGACAGCGGTGGCGAGACCGAGATGAGCAATCCAGACGCCACCACTCCCG
CCGACGAACTCACCCCCGAGCAGCAGGAGCAGGCTCGGGCCATGGCCAAG
GAGCTCGCCGAGGCGCGAGCCGAGATCCTCGAGGCCGACCCGACCGCCAT
CATCGCCAACCATGCGTTCGGCATCTACGAACTGGCGATGCTGCACATCA
CCAACGACGATCCCGACATGAAGGCCGCCCGGCTGGCCGTCGACTCACTC
GGCGCGCTGGTCGAGGGGCTCAAGGGTCGGCTCGACGAAGCAGAGGGTCC
TCTCAACGAAGCGCTCCACGGCGTGCGCCTGCTGTTCGTCGAGCGAACCG
CGGCCCTGAAATCGGCAGCAGCCGACAGCGGTGGCGAGACCGAG
back to top