mRNA_M-pyrifera_M_contig92025.21307.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92025.21307.1
Unique NamemRNA_M-pyrifera_M_contig92025.21307.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92025.21307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92025contigM-pyrifera_M_contig92025:2..664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1.5e-06
Seed eggNOG ortholog4792.ETI31015
Preferred nameFBXO39
KEGG koko:K10270,ko:K10314,ko:K15081
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.Domain with 2 conserved Trp (W) residues
EggNOG OGs3QF2U@4776,COG4642@1,KOG0231@2759,KOG1947@1,KOG1947@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03400,ko04121
Exons1
Model size663
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.4199004-CDS-M-pyrifera_M_contig92025:1..6641622816833.4199004-CDS-M-pyrifera_M_contig92025:1..664Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92025 2..664 +
1692278205.4477723-CDS-M-pyrifera_M_contig92025:1..6641692278205.4477723-CDS-M-pyrifera_M_contig92025:1..664Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92025 2..664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92025.21307.1prot_M-pyrifera_M_contig92025.21307.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92025 2..664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92025.21307.1

>prot_M-pyrifera_M_contig92025.21307.1 ID=prot_M-pyrifera_M_contig92025.21307.1|Name=mRNA_M-pyrifera_M_contig92025.21307.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
KERKEQLKAVLIIQRVYRGWRERVIRRTLHSMRVARRAALRIQTNFRTLR
AKREAAARRRRRQDAEAYAARVAAQGQLLRTLGVHGRSKQRHFRRRLKTW
FGLDLDTTHATIGGIVADVGSDVASAMLSMQMNIRSAATIGATASERHKK
REALRLRAFAAQLQTYRRGDAVRVVIPGHAYAGETATLLWYTPGVRFGGR
AVLKMDADGRQLTVPLTFGGT
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mRNA from alignment at M-pyrifera_M_contig92025:2..664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92025.21307.1 ID=mRNA_M-pyrifera_M_contig92025.21307.1|Name=mRNA_M-pyrifera_M_contig92025.21307.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=663bp|location=Sequence derived from alignment at M-pyrifera_M_contig92025:2..664+ (Macrocystis pyrifera P11B4 male)
AAAGAACGCAAAGAGCAACTCAAAGCTGTTCTTATCATCCAACGAGTGTA
TCGTGGTTGGAGAGAACGTGTCATTCGTCGTACTCTTCATTCCATGCGAG
TGGCACGCAGAGCAGCATTGCGAATTCAAACCAATTTCAGAACACTTCGT
GCCAAACGTGAAGCAGCTGCAAGGCGTCGACGACGACAAGATGCAGAAGC
ATACGCAGCACGTGTAGCCGCACAGGGTCAATTACTACGAACACTTGGTG
TGCATGGAAGGTCAAAACAGAGACACTTTCGCAGACGACTCAAGACTTGG
TTTGGATTGGACCTAGATACCACACATGCAACCATTGGTGGGATTGTGGC
AGATGTTGGTTCTGATGTTGCTTCCGCCATGCTTTCCATGCAAATGAACA
TTCGCAGTGCAGCAACGATTGGTGCTACTGCAAGTGAACGTCACAAGAAA
CGAGAGGCCCTTCGTCTTCGTGCATTTGCTGCACAACTCCAAACCTACCG
TCGTGGTGATGCAGTTCGTGTTGTCATCCCTGGTCATGCATATGCAGGTG
AAACTGCAACCCTCTTGTGGTACACACCTGGAGTTCGTTTTGGTGGTCGT
GCTGTTCTCAAGATGGATGCAGATGGAAGGCAACTTACAGTCCCTCTTAC
GTTTGGTGGTACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92025:2..664+

>mRNA_M-pyrifera_M_contig92025.21307.1 ID=mRNA_M-pyrifera_M_contig92025.21307.1|Name=mRNA_M-pyrifera_M_contig92025.21307.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig92025:2..664+ (Macrocystis pyrifera P11B4 male)
AAAGAACGCAAAGAGCAACTCAAAGCTGTTCTTATCATCCAACGAGTGTA
TCGTGGTTGGAGAGAACGTGTCATTCGTCGTACTCTTCATTCCATGCGAG
TGGCACGCAGAGCAGCATTGCGAATTCAAACCAATTTCAGAACACTTCGT
GCCAAACGTGAAGCAGCTGCAAGGCGTCGACGACGACAAGATGCAGAAGC
ATACGCAGCACGTGTAGCCGCACAGGGTCAATTACTACGAACACTTGGTG
TGCATGGAAGGTCAAAACAGAGACACTTTCGCAGACGACTCAAGACTTGG
TTTGGATTGGACCTAGATACCACACATGCAACCATTGGTGGGATTGTGGC
AGATGTTGGTTCTGATGTTGCTTCCGCCATGCTTTCCATGCAAATGAACA
TTCGCAGTGCAGCAACGATTGGTGCTACTGCAAGTGAACGTCACAAGAAA
CGAGAGGCCCTTCGTCTTCGTGCATTTGCTGCACAACTCCAAACCTACCG
TCGTGGTGATGCAGTTCGTGTTGTCATCCCTGGTCATGCATATGCAGGTG
AAACTGCAACCCTCTTGTGGTACACACCTGGAGTTCGTTTTGGTGGTCGT
GCTGTTCTCAAGATGGATGCAGATGGAAGGCAACTTACAGTCCCTCTTAC
GTTTGGTGGTACTAAAGAACGCAAAGAGCAACTCAAAGCTGTTCTTATCA
TCCAACGAGTGTATCGTGGTTGGAGAGAACGTGTCATTCGTCGTACTCTT
CATTCCATGCGAGTGGCACGCAGAGCAGCATTGCGAATTCAAACCAATTT
CAGAACACTTCGTGCCAAACGTGAAGCAGCTGCAAGGCGTCGACGACGAC
AAGATGCAGAAGCATACGCAGCACGTGTAGCCGCACAGGGTCAATTACTA
CGAACACTTGGTGTGCATGGAAGGTCAAAACAGAGACACTTTCGCAGACG
ACTCAAGACTTGGTTTGGATTGGACCTAGATACCACACATGCAACCATTG
GTGGGATTGTGGCAGATGTTGGTTCTGATGTTGCTTCCGCCATGCTTTCC
ATGCAAATGAACATTCGCAGTGCAGCAACGATTGGTGCTACTGCAAGTGA
ACGTCACAAGAAACGAGAGGCCCTTCGTCTTCGTGCATTTGCTGCACAAC
TCCAAACCTACCGTCGTGGTGATGCAGTTCGTGTTGTCATCCCTGGTCAT
GCATATGCAGGTGAAACTGCAACCCTCTTGTGGTACACACCTGGAGTTCG
TTTTGGTGGTCGTGCTGTTCTCAAGATGGATGCAGATGGAAGGCAACTTA
CAGTCCCTCTTACGTTTGGTGGTACT
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