mRNA_M-pyrifera_M_contig92009.21301.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92009.21301.1
Unique NamemRNA_M-pyrifera_M_contig92009.21301.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: A0A152A5X9_9MYCE (Dynein light intermediate chain n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A5X9_9MYCE)

HSP 1 Score: 123 bits (308), Expect = 1.840e-29
Identity = 60/118 (50.85%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:    1 VRLLTWADGAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADALISAEDDQEFLQRHKDTLE 354
            +R ++   GAGL+YTS R  +NCDV LEYLE++L+GF+   + QL E+D IFVP GWD+  K+TLDFE+Q+VC D    +E VVKKP+S+ ++E      I+A++DQEFLQ+ K ++E
Sbjct:  257 LRRISLQYGAGLIYTSARKEINCDVALEYLENMLFGFELKSKTQLIEKDQIFVPSGWDTYGKITLDFENQKVCKDAQELYENVVKKPSSIKRREMNQQTTITADEDQEFLQKLKSSME 374
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: F4Q459_CAVFA (Dynein light intermediate chain n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q459_CAVFA)

HSP 1 Score: 120 bits (302), Expect = 1.260e-28
Identity = 58/118 (49.15%), Postives = 88/118 (74.58%), Query Frame = 1 
Query:   25 GAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADALISAEDDQEFLQRHKDTLEKKDLVKAK 378
            GAGL+YTS R  +NCDV LEY+E++L+GF+   + QL E+D IFVP GWD+  K+TLDF++Q+VC DV   +E VVKKP+ + ++E    + + AEDDQEFL + K++L+++  +++K
Sbjct:  265 GAGLIYTSARKEINCDVALEYIENILFGFELKSRTQLLEKDQIFVPSGWDTLAKITLDFDNQKVCRDVEELYENVVKKPSIIKRREMNQASAVLAEDDQEFLNKIKNSLDQESPMQSK 382
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: UPI0006448ADE (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448ADE)

HSP 1 Score: 120 bits (300), Expect = 2.170e-28
Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:   25 GAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADALISAEDDQEFLQRHKDTLE 354
            GAGL+YTS R  +NCDV LEY+E++L+G++   + QL E+D +FVP GWDS  K+T+DFE+Q+VC DV   +E VVKKP+ + ++E   +A + A+DDQEFL + K+ +E
Sbjct:  258 GAGLIYTSARKDINCDVALEYIENMLFGYELKSRTQLLEKDQLFVPAGWDSLAKITMDFENQKVCKDVEELYENVVKKPSIIKRREMNQNANVIADDDQEFLAKIKNNVE 367
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: F0ZN51_DICPU (Dynein light intermediate chain n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZN51_DICPU)

HSP 1 Score: 117 bits (293), Expect = 2.520e-27
Identity = 53/111 (47.75%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:   25 GAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADALISAEDDQEFLQRHKDTLEK 357
            GAGL+YTS +  +NCDV LEY+E++L+GF+   + QL E+D IFVP GWD+  K+ +DF++Q+VC D + P+E +VKKP+ + ++E   + L+ A++DQEFL + K  L+K
Sbjct:  269 GAGLIYTSAKKEINCDVSLEYIENILFGFELKSKTQLIEKDQIFVPAGWDTLAKIQVDFDNQKVCKDADEPYENIVKKPSIIKRREMTQNNLLIADEDQEFLSKIKSMLDK 379
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: A0A8J4PJ69_9MYCE (Dynein light intermediate chain n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PJ69_9MYCE)

HSP 1 Score: 114 bits (286), Expect = 2.110e-26
Identity = 55/110 (50.00%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:   25 GAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADALISAEDDQEFLQRHKDTLE 354
            GAGL+YTS R  +NCDV LEY+E+ L+GF+   + QL E+D IFVP GWD+  K+T+DFE+Q+VC D + P+E +VKKP+ V ++E    + I A++DQE+L + K+ L+
Sbjct:  269 GAGLIYTSARKEINCDVALEYIENTLFGFELRAKNQLLEKDQIFVPAGWDTLGKITVDFENQKVCKDADEPYENIVKKPSIVKRREMNQVSAIVADEDQEYLIKIKNQLD 378
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: A0A2P6NNT3_9EUKA (Dynein light intermediate chain n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NNT3_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 2.800e-21
Identity = 52/116 (44.83%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:   25 GAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDF-ESQRVCTDVNTPFEEVVKKPASVVQQEEAADALIS-AEDDQEFLQRHKDTLEKKDL 366
            GA L+Y+S R  +NCD+LL YL H +YG +   +PQL E+++IF+P G DS  K+ LDF E+Q +  D + PF  V+  P  +   ++A   + S AEDDQEFL +H++TL+K+D+
Sbjct:  259 GAALIYSSARKDINCDLLLSYLRHRMYGTEITSKPQLMEKEAIFIPAGADSLTKIKLDFNENQSLTKDFDAPFSSVIPIPKRLQNTDKANLEIPSVAEDDQEFLMKHRETLDKEDV 374
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: D3B0Y6_POLPP (Dynein light intermediate chain n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B0Y6_POLPP)

HSP 1 Score: 96.7 bits (239), Expect = 5.920e-20
Identity = 68/195 (34.87%), Postives = 98/195 (50.26%), Query Frame = 1 
Query:   25 GAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADALISAEDDQEFLQRHKDTLEKKDLVKAKGKKASEPAAQFAAVIEGAKAAGSVPSSXXXXXXXXXXAASP------SAGGASPGKDAAMERDQISSFFTNLLKKGK 591
            GAGL+YTS R  +NCDV LEY+E+ L+GF+   + QL E+D IF+P GWDS  K+T+DFE+Q+VC D    +E V         +E+   A I A+DDQ      K+ L+++      G               G  AAG   S           + SP      + G  SP    + E+  ++SFFT+L+ K +
Sbjct:  256 GAGLIYTSARKDINCDVALEYIENQLFGFELKSRTQLLEKDQIFIPSGWDSLAKITMDFENQKVCKDAEELYENV---------REQNQSATIIADDDQ-----IKNNLDQEVPEAPSG--------------SGGSAAGGDVSKQEKPKVVETGSPSPLRSSTGATGSNSPSTAPSAEKAVLTSFFTSLISKDR 422
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: R7UJC4_CAPTE (Dynein light intermediate chain n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UJC4_CAPTE)

HSP 1 Score: 86.7 bits (213), Expect = 2.280e-16
Identity = 46/111 (41.44%), Postives = 72/111 (64.86%), Query Frame = 1 
Query:   25 GAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADALISAEDDQEFLQRHKDTLEK 357
            GA L YTS R+  NCD+L +Y+ H +YGF F    Q+ ERDS+F+P GWD+ +K+++ +E+    +  N P+E+V+ +P S  ++    DA I+AED+Q FL + +  L K
Sbjct:  262 GAALCYTSVRDDRNCDLLNKYIAHRIYGFPFTADAQVVERDSVFIPTGWDNEKKISILYENMSGMSP-NDPYEDVIARPMS--RKPMQRDAEIAAEDEQLFLMKLQTQLSK 369
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: A0A368EVY3_ANCCA (Dynein light intermediate chain n=1 Tax=Ancylostoma caninum TaxID=29170 RepID=A0A368EVY3_ANCCA)

HSP 1 Score: 81.3 bits (199), Expect = 1.210e-15
Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    1 VRLLTWADGAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADALISAEDDQEFLQR 336
            VR L    GA LVYTS +N  N  VL +Y+ H  YGF F    QL ERDS+FVP GWD  +K+ +  E     +DV+T  E   +KP  + +Q      L+ AED+Q FLQR
Sbjct:   56 VRRLCLQLGAALVYTSAKNVKNIQVLYKYIVHRAYGFPFTSTAQLIERDSVFVPAGWDGEKKIEIVKEG---LSDVDTVLEPTREKPTIIREQ------LVEAEDEQVFLQR 158
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BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Match: A0A368F2D7_ANCCA (Dynein light intermediate chain (Fragment) n=2 Tax=Strongylida TaxID=6308 RepID=A0A368F2D7_ANCCA)

HSP 1 Score: 81.3 bits (199), Expect = 1.060e-14
Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    1 VRLLTWADGAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDSIFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADALISAEDDQEFLQR 336
            VR L    GA LVYTS +N  N  VL +Y+ H  YGF F    QL ERDS+FVP GWD  +K+ +  E     +DV+T  E   +KP  + +Q      L+ AED+Q FLQR
Sbjct:  187 VRRLCLQLGAALVYTSAKNVKNIQVLYKYIVHRAYGFPFTSTAQLIERDSVFVPAGWDGEKKIEIVKEG---LSDVDTVLEPTREKPTIIREQ------LVEAEDEQVFLQR 289
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92009.21301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A152A5X9_9MYCE1.840e-2950.85Dynein light intermediate chain n=1 Tax=Tieghemost... [more]
F4Q459_CAVFA1.260e-2849.15Dynein light intermediate chain n=1 Tax=Cavenderia... [more]
UPI0006448ADE2.170e-2850.91hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZN51_DICPU2.520e-2747.75Dynein light intermediate chain n=1 Tax=Dictyostel... [more]
A0A8J4PJ69_9MYCE2.110e-2650.00Dynein light intermediate chain n=1 Tax=Polysphond... [more]
A0A2P6NNT3_9EUKA2.800e-2144.83Dynein light intermediate chain n=1 Tax=Planoproto... [more]
D3B0Y6_POLPP5.920e-2034.87Dynein light intermediate chain n=1 Tax=Polysphond... [more]
R7UJC4_CAPTE2.280e-1641.44Dynein light intermediate chain n=1 Tax=Capitella ... [more]
A0A368EVY3_ANCCA1.210e-1544.64Dynein light intermediate chain n=1 Tax=Ancylostom... [more]
A0A368F2D7_ANCCA1.060e-1444.64Dynein light intermediate chain (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92009contigM-pyrifera_M_contig92009:32..625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog5786.XP_003288843.1
Preferred namedync1li1
KEGG koko:K10416
KEGG Pathwayko04145,ko04962,ko05132,map04145,map04962,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005868,GO:0005874,GO:0005875,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0008088,GO:0008090,GO:0008150,GO:0009987,GO:0010769,GO:0010970,GO:0010975,GO:0015630,GO:0016043,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030286,GO:0030705,GO:0031344,GO:0032501,GO:0032502,GO:0032991,GO:0035371,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045504,GO:0045595,GO:0045664,GO:0046907,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050773,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051960,GO:0060284,GO:0065007,GO:0071840,GO:0097458,GO:0098930,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0120025,GO:0120035,GO:1902494,GO:1990752,GO:2000026
EggNOG free text desc.Cytoplasmic dynein 1 light intermediate chain
EggNOG OGs3XAZ7@554915,KOG3905@1,KOG3905@2759
COG Functional cat.N
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04812
Exons1
Model size594
Cds size594
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.1546245-CDS-M-pyrifera_M_contig92009:31..6251622816833.1546245-CDS-M-pyrifera_M_contig92009:31..625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92009 32..625 -
1692278205.3121138-CDS-M-pyrifera_M_contig92009:31..6251692278205.3121138-CDS-M-pyrifera_M_contig92009:31..625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92009 32..625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92009.21301.1prot_M-pyrifera_M_contig92009.21301.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92009 32..625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92009.21301.1

>prot_M-pyrifera_M_contig92009.21301.1 ID=prot_M-pyrifera_M_contig92009.21301.1|Name=mRNA_M-pyrifera_M_contig92009.21301.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=198bp
VRLLTWADGAGLVYTSYRNGVNCDVLLEYLEHLLYGFDFVHQPQLQERDS
IFVPVGWDSPEKVTLDFESQRVCTDVNTPFEEVVKKPASVVQQEEAADAL
ISAEDDQEFLQRHKDTLEKKDLVKAKGKKASEPAAQFAAVIEGAKAAGSV
PSSPAKPAGPSSPAASPSAGGASPGKDAAMERDQISSFFTNLLKKGK*
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mRNA from alignment at M-pyrifera_M_contig92009:32..625-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92009.21301.1 ID=mRNA_M-pyrifera_M_contig92009.21301.1|Name=mRNA_M-pyrifera_M_contig92009.21301.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig92009:32..625- (Macrocystis pyrifera P11B4 male)
GTGCGGTTGCTGACGTGGGCAGACGGCGCGGGCCTGGTGTACACGTCGTA
CAGGAACGGCGTGAACTGCGACGTGCTGCTGGAGTACCTCGAGCACCTCC
TCTACGGCTTTGACTTTGTTCACCAGCCGCAGCTGCAAGAGAGGGACTCG
ATCTTCGTGCCGGTTGGCTGGGACTCGCCCGAGAAGGTCACACTGGACTT
TGAGAGCCAGAGAGTTTGCACAGACGTAAACACTCCCTTTGAGGAGGTGG
TGAAGAAGCCTGCCTCCGTTGTACAGCAGGAGGAGGCGGCTGACGCCCTC
ATCTCTGCTGAGGACGACCAGGAGTTCCTGCAGCGCCACAAGGACACCCT
CGAGAAGAAGGACCTCGTCAAGGCAAAGGGAAAGAAGGCCTCCGAGCCTG
CGGCACAGTTTGCCGCTGTCATCGAGGGCGCCAAGGCCGCAGGGTCGGTG
CCCTCTTCTCCCGCCAAGCCCGCGGGCCCCTCCAGCCCTGCCGCCTCGCC
CTCTGCTGGAGGCGCCAGCCCCGGCAAGGACGCCGCCATGGAGAGGGACC
AGATCAGCAGCTTCTTCACCAACCTCCTCAAGAAGGGAAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92009:32..625-

>mRNA_M-pyrifera_M_contig92009.21301.1 ID=mRNA_M-pyrifera_M_contig92009.21301.1|Name=mRNA_M-pyrifera_M_contig92009.21301.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1188bp|location=Sequence derived from alignment at M-pyrifera_M_contig92009:32..625- (Macrocystis pyrifera P11B4 male)
GTGCGGTTGCTGACGTGGGCAGACGGCGCGGGCCTGGTGTACACGTCGTA
CAGGAACGGCGTGAACTGCGACGTGCTGCTGGAGTACCTCGAGCACCTCC
TCTACGGCTTTGACTTTGTTCACCAGCCGCAGCTGCAAGAGAGGGACTCG
ATCTTCGTGCCGGTTGGCTGGGACTCGCCCGAGAAGGTCACACTGGACTT
TGAGAGCCAGAGAGTTTGCACAGACGTAAACACTCCCTTTGAGGAGGTGG
TGAAGAAGCCTGCCTCCGTTGTACAGCAGGAGGAGGCGGCTGACGCCCTC
ATCTCTGCTGAGGACGACCAGGAGTTCCTGCAGCGCCACAAGGACACCCT
CGAGAAGAAGGACCTCGTCAAGGCAAAGGGAAAGAAGGCCTCCGAGCCTG
CGGCACAGTTTGCCGCTGTCATCGAGGGCGCCAAGGCCGCAGGGTCGGTG
CCCTCTTCTCCCGCCAAGCCCGCGGGCCCCTCCAGCCCTGCCGCCTCGCC
CTCTGCTGGAGGCGCCAGCCCCGGCAAGGACGCCGCCATGGAGAGGGACC
AGATCAGCAGCTTCTTCACCAACCTCCTCAAGAAGGGAAAGTAGGTGCGG
TTGCTGACGTGGGCAGACGGCGCGGGCCTGGTGTACACGTCGTACAGGAA
CGGCGTGAACTGCGACGTGCTGCTGGAGTACCTCGAGCACCTCCTCTACG
GCTTTGACTTTGTTCACCAGCCGCAGCTGCAAGAGAGGGACTCGATCTTC
GTGCCGGTTGGCTGGGACTCGCCCGAGAAGGTCACACTGGACTTTGAGAG
CCAGAGAGTTTGCACAGACGTAAACACTCCCTTTGAGGAGGTGGTGAAGA
AGCCTGCCTCCGTTGTACAGCAGGAGGAGGCGGCTGACGCCCTCATCTCT
GCTGAGGACGACCAGGAGTTCCTGCAGCGCCACAAGGACACCCTCGAGAA
GAAGGACCTCGTCAAGGCAAAGGGAAAGAAGGCCTCCGAGCCTGCGGCAC
AGTTTGCCGCTGTCATCGAGGGCGCCAAGGCCGCAGGGTCGGTGCCCTCT
TCTCCCGCCAAGCCCGCGGGCCCCTCCAGCCCTGCCGCCTCGCCCTCTGC
TGGAGGCGCCAGCCCCGGCAAGGACGCCGCCATGGAGAGGGACCAGATCA
GCAGCTTCTTCACCAACCTCCTCAAGAAGGGAAAGTAG
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