mRNA_M-pyrifera_M_contig91950.21291.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91950.21291.1
Unique NamemRNA_M-pyrifera_M_contig91950.21291.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91950.21291.1 vs. uniprot
Match: A0A8F9TZR3_9BACT (Uncharacterized protein n=1 Tax=Oleiharenicola sp. KSB-15 TaxID=2862869 RepID=A0A8F9TZR3_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 2.630e-5
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 1 
Query:   58 GANADANAPLDIDVANLNAATD-TGGIFIRELDGLAIVDASGSGGVDGVRTTGGNADIEITLAAGDLALTAPIVTNGNGDV---IVNVAGNITDADAA------VDIQSAGNTTLIAGGAI--GGA------AANAAIDLDVSALQGTAGN 456
            G  A   A LD+ + +L A    +GGI++    G A    +G+G    VRTTGGN  I +T+  G+L ++AP+  +G+G V       +G+IT + A       + +QS  N TL +GG +  GGA      A N +I L  +A    +GN
Sbjct:  866 GIGAAGLADLDVTIGSLQATNSVSGGIYLAN-QGNAGTTITGTG----VRTTGGNGPISVTVTTGNLTISAPVAADGSGSVQLITAGASGSITSSAATSSATGPILLQSVNNITLNSGGTVATGGAGTIDLEAQNGSIALSAAATASGSGN 1011
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91950.21291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8F9TZR3_9BACT2.630e-533.77Uncharacterized protein n=1 Tax=Oleiharenicola sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91950contigM-pyrifera_M_contig91950:1..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size714
Cds size714
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816832.4822416-CDS-M-pyrifera_M_contig91950:0..7141622816832.4822416-CDS-M-pyrifera_M_contig91950:0..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91950 1..714 +
1692278204.8240201-CDS-M-pyrifera_M_contig91950:0..7141692278204.8240201-CDS-M-pyrifera_M_contig91950:0..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91950 1..714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91950.21291.1prot_M-pyrifera_M_contig91950.21291.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91950 1..714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91950.21291.1

>prot_M-pyrifera_M_contig91950.21291.1 ID=prot_M-pyrifera_M_contig91950.21291.1|Name=mRNA_M-pyrifera_M_contig91950.21291.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=238bp
AAKITTSDTLTLIASGGAIGANADANAPLDIDVANLNAATDTGGIFIREL
DGLAIVDASGSGGVDGVRTTGGNADIEITLAAGDLALTAPIVTNGNGDVI
VNVAGNITDADAAVDIQSAGNTTLIAGGAIGGAAANAAIDLDVSALQGTA
GNTGIFLVELDTITTDGLVINGTGLQTTANDALIDLTVTTGNLQLDEDIT
ANGAGAVTLTLLGPAAELATDNANDDIASSSGDITIIA
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mRNA from alignment at M-pyrifera_M_contig91950:1..714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91950.21291.1 ID=mRNA_M-pyrifera_M_contig91950.21291.1|Name=mRNA_M-pyrifera_M_contig91950.21291.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig91950:1..714+ (Macrocystis pyrifera P11B4 male)
GCGGCGAAAATCACCACGAGCGATACGCTCACGCTGATCGCAAGCGGCGG
CGCTATTGGCGCGAACGCCGATGCGAACGCGCCACTCGATATCGACGTCG
CAAACCTGAATGCAGCGACCGATACGGGCGGCATTTTCATTCGCGAACTC
GACGGGCTCGCGATCGTCGACGCAAGCGGCAGTGGCGGTGTCGATGGCGT
TCGCACGACCGGTGGAAATGCGGACATCGAAATCACCCTCGCCGCCGGGG
ATCTTGCGCTGACCGCCCCGATCGTCACGAACGGCAACGGTGATGTGATC
GTGAACGTGGCCGGGAATATCACCGACGCCGACGCCGCGGTAGACATCCA
AAGCGCGGGCAATACAACACTGATCGCCGGCGGCGCAATCGGCGGCGCCG
CGGCGAACGCCGCGATCGATCTCGATGTCAGCGCACTGCAGGGTACCGCC
GGCAATACCGGCATTTTCCTCGTCGAACTCGACACCATCACTACCGACGG
CCTCGTGATCAACGGTACCGGATTACAGACCACCGCGAACGACGCGCTGA
TCGACCTGACGGTAACCACCGGCAATTTGCAACTCGACGAAGACATCACC
GCGAATGGTGCCGGTGCGGTAACACTCACCTTGCTCGGGCCCGCGGCCGA
ACTCGCAACCGACAATGCAAACGATGACATCGCCTCAAGCTCGGGCGATA
TCACGATCATCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91950:1..714+

>mRNA_M-pyrifera_M_contig91950.21291.1 ID=mRNA_M-pyrifera_M_contig91950.21291.1|Name=mRNA_M-pyrifera_M_contig91950.21291.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1428bp|location=Sequence derived from alignment at M-pyrifera_M_contig91950:1..714+ (Macrocystis pyrifera P11B4 male)
GCGGCGAAAATCACCACGAGCGATACGCTCACGCTGATCGCAAGCGGCGG
CGCTATTGGCGCGAACGCCGATGCGAACGCGCCACTCGATATCGACGTCG
CAAACCTGAATGCAGCGACCGATACGGGCGGCATTTTCATTCGCGAACTC
GACGGGCTCGCGATCGTCGACGCAAGCGGCAGTGGCGGTGTCGATGGCGT
TCGCACGACCGGTGGAAATGCGGACATCGAAATCACCCTCGCCGCCGGGG
ATCTTGCGCTGACCGCCCCGATCGTCACGAACGGCAACGGTGATGTGATC
GTGAACGTGGCCGGGAATATCACCGACGCCGACGCCGCGGTAGACATCCA
AAGCGCGGGCAATACAACACTGATCGCCGGCGGCGCAATCGGCGGCGCCG
CGGCGAACGCCGCGATCGATCTCGATGTCAGCGCACTGCAGGGTACCGCC
GGCAATACCGGCATTTTCCTCGTCGAACTCGACACCATCACTACCGACGG
CCTCGTGATCAACGGTACCGGATTACAGACCACCGCGAACGACGCGCTGA
TCGACCTGACGGTAACCACCGGCAATTTGCAACTCGACGAAGACATCACC
GCGAATGGTGCCGGTGCGGTAACACTCACCTTGCTCGGGCCCGCGGCCGA
ACTCGCAACCGACAATGCAAACGATGACATCGCCTCAAGCTCGGGCGATA
TCACGATCATCGCCGCGGCGAAAATCACCACGAGCGATACGCTCACGCTG
ATCGCAAGCGGCGGCGCTATTGGCGCGAACGCCGATGCGAACGCGCCACT
CGATATCGACGTCGCAAACCTGAATGCAGCGACCGATACGGGCGGCATTT
TCATTCGCGAACTCGACGGGCTCGCGATCGTCGACGCAAGCGGCAGTGGC
GGTGTCGATGGCGTTCGCACGACCGGTGGAAATGCGGACATCGAAATCAC
CCTCGCCGCCGGGGATCTTGCGCTGACCGCCCCGATCGTCACGAACGGCA
ACGGTGATGTGATCGTGAACGTGGCCGGGAATATCACCGACGCCGACGCC
GCGGTAGACATCCAAAGCGCGGGCAATACAACACTGATCGCCGGCGGCGC
AATCGGCGGCGCCGCGGCGAACGCCGCGATCGATCTCGATGTCAGCGCAC
TGCAGGGTACCGCCGGCAATACCGGCATTTTCCTCGTCGAACTCGACACC
ATCACTACCGACGGCCTCGTGATCAACGGTACCGGATTACAGACCACCGC
GAACGACGCGCTGATCGACCTGACGGTAACCACCGGCAATTTGCAACTCG
ACGAAGACATCACCGCGAATGGTGCCGGTGCGGTAACACTCACCTTGCTC
GGGCCCGCGGCCGAACTCGCAACCGACAATGCAAACGATGACATCGCCTC
AAGCTCGGGCGATATCACGATCATCGCC
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