mRNA_M-pyrifera_M_contig91946.21289.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91946.21289.1
Unique NamemRNA_M-pyrifera_M_contig91946.21289.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: A0A518A7C0_9PLAN (Uncharacterized protein n=9 Tax=Gimesia TaxID=1649453 RepID=A0A518A7C0_9PLAN)

HSP 1 Score: 363 bits (931), Expect = 1.490e-123
Identity = 179/202 (88.61%), Postives = 189/202 (93.56%), Query Frame = 1
Query:    1 SPNVKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNPGVPSDVWGLPQIPGYPVLDLAAGLPQVRHQEASIRHRPTPIESRVAERVEPAWADSPGPEPQWRATQEEP-QFGFEEPDTFPASDTMPAPEENPFRAPGSFEGAAEEPPGRVKL 603
            SPNVKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCG TNAVLPHVIKLDWPQAGIVMTMTMSQISVNPGVP+DVWGLPQIPGYPVLDLAAG+P+  H EAS+R RPTPIESRVAERVEPAWADSPGPEPQWR  Q +P +FGFEEP TFPASD++P PEENPFR+PGSFE  AEEPPGRV+L
Sbjct:  180 SPNVKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGGTNAVLPHVIKLDWPQAGIVMTMTMSQISVNPGVPADVWGLPQIPGYPVLDLAAGMPRPSHPEASLRQRPTPIESRVAERVEPAWADSPGPEPQWRPAQSQPPEFGFEEPATFPASDSLPTPEENPFRSPGSFEETAEEPPGRVRL 381          
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: A0A517VWK5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VWK5_9PLAN)

HSP 1 Score: 266 bits (681), Expect = 1.340e-85
Identity = 143/204 (70.10%), Postives = 164/204 (80.39%), Query Frame = 1
Query:    1 SPNVKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNP-GVPSDVWGLPQIPGYPVLDLAAGLP-QVRHQEASIRHRPTPIESRVAERVEPAWAD-SPGPEPQWRATQEEPQFGFEEPDTFPASDTMPAPEENPFRAPGSFEGAAEEPPGRVKL 603
            SPN+KLISDRLLPNGKLVQKI+VVNLCTG+IIEQSLYDS+GQRIATATLGEYR C  + A LPHVIKLDWPQAGIV+TMTM+ I VNP G+P++VWGLPQIPGYPVLDL +G P Q   +EAS+R RPT IESRVAE  EP W+  +PG EP+W+ TQ     GFEEP+T PA+D    P ENPFR+P SF    EE PGRV+L
Sbjct:  189 SPNIKLISDRLLPNGKLVQKILVVNLCTGNIIEQSLYDSRGQRIATATLGEYRVCNNSGATLPHVIKLDWPQAGIVLTMTMANIDVNPVGIPNEVWGLPQIPGYPVLDLGSGFPNQPPQREASLR-RPTRIESRVAELEEPDWSQGNPGFEPEWKPTQ----IGFEEPETIPANDIQDEPLENPFRSPDSFS-EPEEAPGRVRL 386          
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: A0A517RGI4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RGI4_9PLAN)

HSP 1 Score: 265 bits (678), Expect = 3.580e-85
Identity = 142/203 (69.95%), Postives = 159/203 (78.33%), Query Frame = 1
Query:    1 SPNVKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNP-GVPSDVWGLPQIPGYPVLDLAAGLPQVRHQEASIRHRPTPIESRVAERVEPAWADSP-GPEPQWRATQEEPQFGFEEPDTFPASDTMPAPEENPFRAPGSFEGAAEEPPGRVKL 603
            SPNVKLISDRLLPNGKLVQKI+VVNLCTGHIIEQSLYDSQGQRIATATLGEYR C  + A LPHVIKLDWPQAGIV+TMTMS I VNP GVP +VWGLPQIPGYPVLDL +  P  R  EASI  RPT I+SR+AE  EP W++S    EPQW+  Q     GFE+ +TFP ++  P P +NPFR PGSF+   EE PGRV+L
Sbjct:  189 SPNVKLISDRLLPNGKLVQKILVVNLCTGHIIEQSLYDSQGQRIATATLGEYRVCSNSGATLPHVIKLDWPQAGIVLTMTMSNIEVNPAGVPPEVWGLPQIPGYPVLDLGSSFPVQR--EASIGPRPTRIDSRIAELEEPDWSNSTLSEEPQWKPAQ----TGFEKSETFPVNELQPLPRDNPFRPPGSFD-EPEEAPGRVRL 384          
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: A0A2E2BYZ8_9PLAN (Uncharacterized protein n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BYZ8_9PLAN)

HSP 1 Score: 258 bits (659), Expect = 2.810e-82
Identity = 136/204 (66.67%), Postives = 158/204 (77.45%), Query Frame = 1
Query:    1 SPNVKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNPG-VPSDVWGLPQIPGYPVLDLAAGLPQVRHQEASIRH-RPTPIESRVAERVEPAWADSPGPEPQWRATQEEPQFGFEEPDTFPASDTMPAPE-ENPFRAPGSFEGAAEEPPGRVKL 603
            SPNVKLISDRLLPNGKLVQKI+VVNLCTG+IIEQSLYDSQGQRIATAT GEYR C  TNA+LPHVIKLDWPQ GIV+TMTM+ I VNP  VP++VW +PQ PGYPVLDL A LP     +AS+   RP  I+SR+AER EP W++     PQW+        GFEE +TFPA+D++P P+ +NPFR PGSF+   EE PGRVKL
Sbjct:  190 SPNVKLISDRLLPNGKLVQKILVVNLCTGYIIEQSLYDSQGQRIATATFGEYRNCSNTNAILPHVIKLDWPQTGIVLTMTMANIDVNPANVPTEVWEVPQYPGYPVLDLGAHLPS---GQASLEETRPMRIDSRIAERAEPNWSEPTDTVPQWKPAN----VGFEEAETFPANDSVPLPDHQNPFRPPGSFDEEPEEAPGRVKL 386          
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: A0A257WN56_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257WN56_9BACT)

HSP 1 Score: 108 bits (270), Expect = 1.840e-24
Identity = 52/126 (41.27%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   10 VKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNP-GVPSDVWGLPQIPGYPVLDLAAGLPQVRHQEASIRHRPTP 384
            ++L+S   +P+G  V+K++VVN C G+++E S YD  G+ +  A L +YR   A+ AVLPH +KLDWPQA + + M +  + VNP  +P+ VW +PQIP  P++DL  G P++   + + R R  P
Sbjct:  195 IRLVSSHTMPDGVEVKKVVVVNACHGYVMEHSTYDRDGRPLVRALLQDYRRDQASGAVLPHYVKLDWPQAEMSLAMNLGHVEVNPPAIPAGVWEMPQIPQTPLVDL--GDPRLGGPQYAARRRSEP 318          
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: UPI0019AA5ABE (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI0019AA5ABE)

HSP 1 Score: 85.5 bits (210), Expect = 1.580e-16
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 SPNVKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNP-GVPSDVWGLPQIPGYPVLDL 324
            S  V  ++D++ P GK VQ+ ++V+ C G ++E SL D  G+ IA ATL  Y+    +   LPH + L WP +G+ +TM M  I VNP  +    W +P  P  PV+DL
Sbjct:  175 SRRVLFVADQITPQGKRVQRTMLVDACQGVVLEHSLRDPTGRLIARATLSNYQR-EPSGVRLPHRVDLFWPDSGVDLTMRMGHIEVNPTAISEQTWSMPSYPDAPVIDL 282          
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: A0A2E8FD02_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8FD02_9PLAN)

HSP 1 Score: 80.5 bits (197), Expect = 1.040e-14
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   16 LISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNPGVPSD-VWGLPQIPGYPVLDLA 327
            L+++R  P G  V++ +VV+ C G ++EQSL+D   Q IA A L  +RT   T  V+P   +L+WP+AG+ + +++S I VNP V ++  W +P   G    DLA
Sbjct:  172 LVAERRSPRGTRVRRQLVVDTCLGVVVEQSLFDDSSQLIARARLNGHRTDQDTGIVVPRRFELEWPEAGMSLMISLSDIEVNPTVVTESTWQVPHALGAGTFDLA 276          
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: A0A3M1VHA6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1VHA6_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 1.060e-11
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   10 VKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNPG-VPSDVWGLP 294
            V L+ DR    G  V +++ V+L +G I+  ++YD QG+ +  A L ++RT   T   LPH + L+WP AGI M++ + +I VNP  +P  VW  P
Sbjct:  195 VFLVDDRATLAGVPVYRVMTVDLFSGVIVAHTVYDRQGRVLLRARLTDFRTDERTGVPLPHRVALEWPPAGIAMSIGLREIEVNPTEIPESVWQRP 290          
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: A0A518D9E7_9BACT (Uncharacterized protein n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518D9E7_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 3.030e-10
Identity = 66/208 (31.73%), Postives = 98/208 (47.12%), Query Frame = 1
Query:   37 PNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNPGV--PSDVWGLPQIPGYPVLDL--AAGLPQVRHQEASIRHRPTPIESRVAERVEPAWADSPGPEPQ-----WRATQEEPQFGFEEPDTFPASDT-MPAPEENPFRAPGSFEGAAEE---------PPGRVKL 603
            P G L +++ VV+   G ++EQ LYD+ GQ +A+AT  ++R      A LP  + +  P+A +  T+ M+ +S+N  V  P+ ++GLP   G P +DL  A G P      +S       + S     V  A+  SP P PQ      +AT E P    + P+T P  D    A E+  +R+ GS     E          PPG V L
Sbjct:  192 PAGPL-KRVTVVDPTRGWVVEQHLYDTAGQLLASATARKFRYDVTAQASLPSTVSIRVPRANLAFTLDMANVSINQPVSDPAAIYGLPTFEGTPQIDLGRAGGAPIGAAPPSSNAAPVGQLRSPAGYTVPTAYT-SPLPAPQRELIPLQATGEPPSV-TQAPETMPVVDLGRTATEQTQWRSSGSINADIEADGGPQVERLPPGGVAL 396          
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Match: A0A2E3RCE5_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3RCE5_9PLAN)

HSP 1 Score: 65.1 bits (157), Expect = 6.170e-9
Identity = 30/97 (30.93%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   37 PNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLGEYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNPGVP-SDVWGLPQIPGYPVLDL 324
            P G +  ++++++  +G+I E  L D+QGQ +A A   ++     + A+LP    +DWP AG+ +T+ +  + + P  P SD+W  P  PG+P + +
Sbjct:  168 PAGAMT-RVLIIDSASGYINEIQLIDAQGQLVAAARNSDHFRDPESGAILPRKTDIDWPAAGMQLTLRLGDVQIAPLDPQSDLWAKPSYPGFPXVSV 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91946.21289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A518A7C0_9PLAN1.490e-12388.61Uncharacterized protein n=9 Tax=Gimesia TaxID=1649... [more]
A0A517VWK5_9PLAN1.340e-8570.10Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A517RGI4_9PLAN3.580e-8569.95Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A2E2BYZ8_9PLAN2.810e-8266.67Uncharacterized protein n=10 Tax=Planctomycetaceae... [more]
A0A257WN56_9BACT1.840e-2441.27Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
UPI0019AA5ABE1.580e-1639.45Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E8FD02_9PLAN1.040e-1439.05Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3M1VHA6_9BACT1.060e-1138.54Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518D9E7_9BACT3.030e-1031.73Uncharacterized protein n=1 Tax=Pirellulimonas nud... [more]
A0A2E3RCE5_9PLAN6.170e-930.93Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91946contigM-pyrifera_M_contig91946:166..771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score261.2
Seed ortholog evalue4.1e-67
Seed eggNOG ortholog344747.PM8797T_28814
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3Q1@1,2J0KM@203682,32YN0@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size606
Cds size606
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816832.4066863-CDS-M-pyrifera_M_contig91946:165..7711622816832.4066863-CDS-M-pyrifera_M_contig91946:165..771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91946 166..771 -
1692278204.78858-CDS-M-pyrifera_M_contig91946:165..7711692278204.78858-CDS-M-pyrifera_M_contig91946:165..771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91946 166..771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91946.21289.1prot_M-pyrifera_M_contig91946.21289.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91946 166..771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91946.21289.1

>prot_M-pyrifera_M_contig91946.21289.1 ID=prot_M-pyrifera_M_contig91946.21289.1|Name=mRNA_M-pyrifera_M_contig91946.21289.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
SPNVKLISDRLLPNGKLVQKIIVVNLCTGHIIEQSLYDSQGQRIATATLG
EYRTCGATNAVLPHVIKLDWPQAGIVMTMTMSQISVNPGVPSDVWGLPQI
PGYPVLDLAAGLPQVRHQEASIRHRPTPIESRVAERVEPAWADSPGPEPQ
WRATQEEPQFGFEEPDTFPASDTMPAPEENPFRAPGSFEGAAEEPPGRVK
L*
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mRNA from alignment at M-pyrifera_M_contig91946:166..771-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91946.21289.1 ID=mRNA_M-pyrifera_M_contig91946.21289.1|Name=mRNA_M-pyrifera_M_contig91946.21289.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig91946:166..771- (Macrocystis pyrifera P11B4 male)
TCACCGAACGTGAAACTGATCTCCGATCGCCTGCTGCCAAACGGCAAACT GGTACAGAAGATTATTGTCGTCAATCTCTGTACCGGGCATATCATCGAAC AGTCCCTATATGACAGCCAGGGACAACGAATCGCGACCGCAACACTGGGT GAATATCGCACCTGCGGTGCCACGAATGCGGTTCTGCCCCACGTCATCAA GCTCGACTGGCCACAGGCGGGAATCGTGATGACGATGACCATGTCGCAGA TCAGCGTCAATCCAGGCGTTCCTTCCGATGTCTGGGGACTGCCACAGATT CCGGGCTACCCCGTGCTGGACCTTGCTGCAGGACTGCCCCAGGTCAGGCA TCAGGAAGCCTCCATAAGACATCGCCCGACACCGATTGAGTCACGGGTTG CCGAGCGGGTCGAACCCGCCTGGGCCGATTCACCGGGTCCGGAGCCTCAA TGGAGAGCGACACAGGAAGAACCTCAGTTCGGTTTCGAAGAACCGGATAC CTTCCCTGCCAGCGATACGATGCCTGCCCCCGAGGAAAATCCCTTCCGGG CGCCAGGCTCGTTTGAAGGGGCTGCAGAAGAACCACCGGGGCGCGTGAAG CTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91946:166..771-

>mRNA_M-pyrifera_M_contig91946.21289.1 ID=mRNA_M-pyrifera_M_contig91946.21289.1|Name=mRNA_M-pyrifera_M_contig91946.21289.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig91946:166..771- (Macrocystis pyrifera P11B4 male)
TCACCGAACGTGAAACTGATCTCCGATCGCCTGCTGCCAAACGGCAAACT
GGTACAGAAGATTATTGTCGTCAATCTCTGTACCGGGCATATCATCGAAC
AGTCCCTATATGACAGCCAGGGACAACGAATCGCGACCGCAACACTGGGT
GAATATCGCACCTGCGGTGCCACGAATGCGGTTCTGCCCCACGTCATCAA
GCTCGACTGGCCACAGGCGGGAATCGTGATGACGATGACCATGTCGCAGA
TCAGCGTCAATCCAGGCGTTCCTTCCGATGTCTGGGGACTGCCACAGATT
CCGGGCTACCCCGTGCTGGACCTTGCTGCAGGACTGCCCCAGGTCAGGCA
TCAGGAAGCCTCCATAAGACATCGCCCGACACCGATTGAGTCACGGGTTG
CCGAGCGGGTCGAACCCGCCTGGGCCGATTCACCGGGTCCGGAGCCTCAA
TGGAGAGCGACACAGGAAGAACCTCAGTTCGGTTTCGAAGAACCGGATAC
CTTCCCTGCCAGCGATACGATGCCTGCCCCCGAGGAAAATCCCTTCCGGG
CGCCAGGCTCGTTTGAAGGGGCTGCAGAAGAACCACCGGGGCGCGTGAAG
CTCTAATCACCGAACGTGAAACTGATCTCCGATCGCCTGCTGCCAAACGG
CAAACTGGTACAGAAGATTATTGTCGTCAATCTCTGTACCGGGCATATCA
TCGAACAGTCCCTATATGACAGCCAGGGACAACGAATCGCGACCGCAACA
CTGGGTGAATATCGCACCTGCGGTGCCACGAATGCGGTTCTGCCCCACGT
CATCAAGCTCGACTGGCCACAGGCGGGAATCGTGATGACGATGACCATGT
CGCAGATCAGCGTCAATCCAGGCGTTCCTTCCGATGTCTGGGGACTGCCA
CAGATTCCGGGCTACCCCGTGCTGGACCTTGCTGCAGGACTGCCCCAGGT
CAGGCATCAGGAAGCCTCCATAAGACATCGCCCGACACCGATTGAGTCAC
GGGTTGCCGAGCGGGTCGAACCCGCCTGGGCCGATTCACCGGGTCCGGAG
CCTCAATGGAGAGCGACACAGGAAGAACCTCAGTTCGGTTTCGAAGAACC
GGATACCTTCCCTGCCAGCGATACGATGCCTGCCCCCGAGGAAAATCCCT
TCCGGGCGCCAGGCTCGTTTGAAGGGGCTGCAGAAGAACCACCGGGGCGC
GTGAAGCTCTAA
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