mRNA_M-pyrifera_M_contig91928.21285.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91928.21285.1
Unique NamemRNA_M-pyrifera_M_contig91928.21285.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: A0A1I8A8H1_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8A8H1_9BILA)

HSP 1 Score: 89.0 bits (219), Expect = 1.320e-18
Identity = 55/146 (37.67%), Postives = 77/146 (52.74%), Query Frame = 1 
Query:   10 RVAVATALWYVFVGCFNTVQFYSGSCSNEAIAHPR-HCTREGHEWS-GMDISGHCFLIVFSSLILWSES---KQRPSPQGGGGALRV-----------AVEWAVLVLRLLWFVGLWATCCYFHEVHDKVLGCLFGAMCWYLTYGLL 399
            R+ VAT LWY F   F +++  SG+C+    A  R  C  +G  WS G DISGHCFL+++S LI+  E+   ++ P   G G A  +           +   A+L L LLW   L  T  Y+H   DK+LG L   +CW+ TY +L
Sbjct:  117 RLVVATFLWYFFTSSFVSIEQKSGTCNGAKGAFSRSECKLQGGRWSHGYDISGHCFLMIYSILIICEEAIAFRKWPEYSGQGDARSIEQYRKSTLLVRSFFVAMLALHLLWDFQLVMTVLYYHTFLDKILGALCATLCWFGTYRVL 262
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: A0A4E9FIE5_BRUMA (Protein C20orf142 homolog, putative n=6 Tax=Onchocercidae TaxID=6296 RepID=A0A4E9FIE5_BRUMA)

HSP 1 Score: 85.5 bits (210), Expect = 2.270e-17
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 1 
Query:   10 RVAVATALWYVFVGCFNTVQFYSGSCSNEAIAHPRHCTREGHEW-SGMDISGHCFLIVFSSLILWSES----------KQRPSPQGGGGALRVAVEWAVLVLRLLWFVGLWATCCYFHEVHDKVLGCLFGAMCWYLTY 390
            R+ +AT +WY     F   +  +G C    ++    C  +G +W  G DISGHCF++++SSLI+  E+          + R  P    G L      ++ VL LLW   L  +  Y+H ++ K++G +   +CWY TY
Sbjct:  115 RMVIATTIWYYCTHSFVVFEQMTGHCHGSKLSSRSSCAVDGGKWIPGFDISGHCFILIYSSLIICEEALAFRNITIIHRTRKMPSVKNGNLIRIFFLSMCVLHLLWDFELLISVLYYHHIYHKMMGAIIAVLCWYFTY 252
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: C1BIH7_OSMMO (C20orf142 homolog n=2 Tax=Osmeridae TaxID=8012 RepID=C1BIH7_OSMMO)

HSP 1 Score: 84.0 bits (206), Expect = 5.850e-17
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1 
Query:   19 VATALWYVFVGCFNTVQFYSGSCSNEAIAHPRH--------CTREGHEWSGMDISGHCFLIVFSSLILWSESKQRPSPQGGGGALRVAVEWAVLVLRLLWFVGLWATCC---YFHEVHDKVLGCLFGAMCWYLTY 390
            VAT +WY     FN ++  +G+C   A     H        C + G  W G DISGHCF++ +S+LI+    K+  +P        + ++   + L  +  + +W   C   YFH++  KV G L G +CWYLTY
Sbjct:   96 VATIIWYACTETFNYIEEITGTCDESAPMEDFHEPYTTKVSCRKAGFLWHGFDISGHCFILAYSALII----KEEIAPMDVKKPHSILIDVLFISLNAIVMIWIWMFICTSVYFHDLLHKVFGTLCGILCWYLTY 226
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: A0A1I7VS92_LOALO (Uncharacterized protein n=1 Tax=Loa loa TaxID=7209 RepID=A0A1I7VS92_LOALO)

HSP 1 Score: 84.0 bits (206), Expect = 8.760e-17
Identity = 49/154 (31.82%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:   10 RVAVATALWYVFVGCFNTVQFYSGSCSNEAIAHPRHCTREGHEW-SGMDISGHCFLIVFSSLILWSES----------KQRPSPQGGGGALRVAVEWAVLVLRLLWFVGLWATCCYFHEVHDKVLGCLFGAMCWYLTY-------GLLPLYLDL 417
            R+ +AT +WY     F   +  +G C    ++    C+ +G +W  G DISGHCF++++SSLI+  E+          + R +P      L       + VL LLW   L  +  Y+H ++ KV+G L   +CWY TY       G+ PL L L
Sbjct:  116 RMVIATIVWYYCTHSFVVFEHMTGHCYGSELSPRSSCSVDGGKWVPGFDISGHCFILIYSSLIICEEALAFRSITIVHRTRRTPSVKNENLIRIFFICMCVLHLLWDFELLISVLYYHHIYHKVMGALIAILCWYFTYHIWYRKVGIPPLPLQL 269
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: A0A2K6VJU6_ONCVO (Uncharacterized protein n=2 Tax=Onchocerca TaxID=6281 RepID=A0A2K6VJU6_ONCVO)

HSP 1 Score: 83.2 bits (204), Expect = 1.730e-16
Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = 1 
Query:   10 RVAVATALWYVFVGCFNTVQFYSGSCSNEAIAHPRHCTREGHEW-SGMDISGHCFLIVFSSLILWSES----------KQRPSPQGGGGALRVAVEWAVLVLRLLWFVGLWATCCYFHEVHDKVLGCLFGAMCWYLTY 390
            R+ +AT +WY     F   +  +G C    ++    CT +G +W  G DISGHCF++++SSLI+  E+          + R  P      L      ++  L LLW   L  +  Y+H ++ KV+G L   +CWY TY
Sbjct:  116 RMIIATTIWYYCTHAFVVFEQMTGHCHGSKLSPRSSCTVDGGKWIPGFDISGHCFILIYSSLIICEEALAFRSVTIVHRIRKMPSVKNENLIKIFFISMCALHLLWDFELLISVLYYHHIYHKVMGALVAVLCWYFTY 253
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: A0A8J2MIR3_9BILA (Hypothetical protein n=1 Tax=Cercopithifilaria johnstoni TaxID=2874296 RepID=A0A8J2MIR3_9BILA)

HSP 1 Score: 83.2 bits (204), Expect = 1.910e-16
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   10 RVAVATALWYVFVGCFNTVQFYSGSCSNEAIAHPRHCTREGHEW-SGMDISGHCFLIVFSSLILWSES-----------KQRPSPQGGGGALRVAVEWAVLVLRLLWFVGLWATCCYFHEVHDKVLGCLFGAMCWYLTY 390
            R+ +AT +WY     F   +  +G C    ++    C  +G +W  G DISGHCF++++SSLI+  E+            +R  P      +R+   + + VL LLW   L  +  Y+H ++ KV+G L   +CWY TY
Sbjct:  124 RMVIATTIWYYCTHGFLVFEQITGHCHGSKLSSRTSCAIDGGKWVPGFDISGHCFILIYSSLIICEEALAFRIITTVHRTRRMQPIKNENLIRIFFIF-MCVLHLLWDFELLISVLYYHHIYHKVMGALIAILCWYFTY 261
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: A0A4U5P9T3_STECR (Uncharacterized protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5P9T3_STECR)

HSP 1 Score: 83.2 bits (204), Expect = 1.980e-16
Identity = 54/143 (37.76%), Postives = 75/143 (52.45%), Query Frame = 1 
Query:   10 RVAVATALWYVFVGCFNTVQFYSGSCSNEAIAHPR-HCTREGHEWS-GMDISGHCFLIVFSSLILWSES---KQRPSPQGGGGALRVA--------VEW---AVLVLRLLWFVGLWATCCYFHEVHDKVLGCLFGAMCWYLTY 390
            R+ VAT LWY F   F +++  SGSCS +  +  R  C  +G  W+ G DISGHCFL+++S LI+  E+   ++ P   G G A  +         V W    +L L LLW   L  T  Y+H   DK+LG    A  W++TY
Sbjct:  118 RLVVATFLWYFFTDTFVSIEQKSGSCSIKHGSLSRADCRLKGGSWNRGFDISGHCFLMIYSILIICEEAVAFRRWPEYAGQGDAESIEDYRKNTNRVRWLFVGMLALHLLWDFQLVWTVLYYHTFLDKILGAFCAAASWFVTY 260
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: A0A3P6U8D0_LITSI (Uncharacterized protein n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6U8D0_LITSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.020e-16
Identity = 42/139 (30.22%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   10 RVAVATALWYVFVGCFNTVQFYSGSCSNEAIAHPRHCTREGHEW-SGMDISGHCFLIVFSSLILWSES-----------KQRPSPQGGGGALRVAVEWAVLVLRLLWFVGLWATCCYFHEVHDKVLGCLFGAMCWYLTY 390
            R+ +AT +WY     F   +  +G C    ++    C  +G +W  G DISGHCF++++SSLI+  E+            ++ +       +RV    ++ +L LLW   L  +  Y+H ++ KV+G L   +CWY TY
Sbjct:  110 RMIIATTIWYYCTHAFVVFEQMTGHCHGSKLSSRTSCAIDGGKWIPGFDISGHCFILIYSSLIMCEEALAFRIIAKVHRTRKMTAVKNENLIRVFFV-SMCILHLLWDFELLISALYYHHIYHKVMGALVAVLCWYFTY 247
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: A0A3P9Q8E3_POERE (Fat storage inducing transmembrane protein 2 n=1 Tax=Poecilia reticulata TaxID=8081 RepID=A0A3P9Q8E3_POERE)

HSP 1 Score: 81.3 bits (199), Expect = 6.430e-16
Identity = 48/136 (35.29%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:   16 AVATALWYVFVGCFNTVQFYSGSCSNEAIAHPRH-------CTREGHEWSGMDISGHCFLIVFSSLILWSESKQRPSPQGGGGALRVAVEWAVLVLRLLWFVGLWATCC---YFHEVHDKVLGCLFGAMCWYLTYG 393
            AVATA+WYV  G F  ++  +GSC     A   +       C R G  W G DISGH F++ +SSL++  E       +  G   +  +    + L L+    +W   C   YFH+  DK+LG + G + WYLTYG
Sbjct:   92 AVATAVWYVCTGTFLFIEDVTGSCFESQTAPIANNFTSKAACRRAGFHWQGHDISGHSFILCYSSLLIMEEMSAMTVLKTAG-LHKTLLNLLYVDLNLIVATWVWMFACTSVYFHDPKDKLLGTVCGLLGWYLTYG 226
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BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Match: A0A8B7DWK3_HYDVU (fat storage-inducing transmembrane protein 2-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DWK3_HYDVU)

HSP 1 Score: 81.6 bits (200), Expect = 6.460e-16
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 1 
Query:   10 RVAVATALWYVFVGCFNTVQFYSGSCSNEAIAHPRH-CTREGHEWSGMDISGHCFLIVFSSLILWSE----------------SKQRPSPQG-GGGALRVAVEWAV-------LVLRLLWFVGLWATCCYFHEVHDKVLGCLFGAMCWYLTY 390
            R+ V T  WY+F   F T++ Y+G+C  +   + +  C   G  W+G DISGHCFL+ + +L++  E                +K + + +  G     V  +W +       L+L LLW V L+ TC YFH +  K LG  FG + +Y+ Y
Sbjct:  101 RIFVLTLTWYLFTSFFETIESYTGNCVGDNNLNIKEVCRNSGFLWNGFDISGHCFLLTYCTLVINEELLATMNVVIQINNNDNNKLKKAYKFLGFDFSAVLFDWLIEFFSASLLLLMLLWEVMLFFTCAYFHTLMQKFLGVCFGLLAYYICY 252
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91928.21285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I8A8H1_9BILA1.320e-1837.67Uncharacterized protein n=1 Tax=Steinernema glaser... [more]
A0A4E9FIE5_BRUMA2.270e-1731.16Protein C20orf142 homolog, putative n=6 Tax=Onchoc... [more]
C1BIH7_OSMMO5.850e-1732.59C20orf142 homolog n=2 Tax=Osmeridae TaxID=8012 Rep... [more]
A0A1I7VS92_LOALO8.760e-1731.82Uncharacterized protein n=1 Tax=Loa loa TaxID=7209... [more]
A0A2K6VJU6_ONCVO1.730e-1631.88Uncharacterized protein n=2 Tax=Onchocerca TaxID=6... [more]
A0A8J2MIR3_9BILA1.910e-1631.65Hypothetical protein n=1 Tax=Cercopithifilaria joh... [more]
A0A4U5P9T3_STECR1.980e-1637.76Uncharacterized protein n=1 Tax=Steinernema carpoc... [more]
A0A3P6U8D0_LITSI6.020e-1630.22Uncharacterized protein n=1 Tax=Litomosoides sigmo... [more]
A0A3P9Q8E3_POERE6.430e-1635.29Fat storage inducing transmembrane protein 2 n=1 T... [more]
A0A8B7DWK3_HYDVU6.460e-1631.58fat storage-inducing transmembrane protein 2-like ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91928contigM-pyrifera_M_contig91928:208..636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score94.4
Seed ortholog evalue4.7e-17
Seed eggNOG ortholog10141.ENSCPOP00000013065
Preferred nameFITM2
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0006996,GO:0007010,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009987,GO:0010866,GO:0010876,GO:0010883,GO:0010884,GO:0010889,GO:0010890,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0019216,GO:0019222,GO:0019637,GO:0019725,GO:0019915,GO:0022603,GO:0022604,GO:0030176,GO:0030730,GO:0031224,GO:0031227,GO:0031323,GO:0031326,GO:0031984,GO:0032879,GO:0033036,GO:0034389,GO:0035356,GO:0042175,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046890,GO:0048518,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051235,GO:0055082,GO:0055088,GO:0055090,GO:0065007,GO:0065008,GO:0070328,GO:0071704,GO:0071840,GO:0080090,GO:0090207,GO:0090407,GO:0098827,GO:1901576,GO:1905952,GO:1905954
EggNOG free text desc.Inositol phospholipid synthesis and fat-storage-inducing TM
EggNOG OGs35D2Z@314146,38DTS@33154,3BK1N@33208,3D2GA@33213,3JA5T@40674,481TN@7711,48WZ3@7742,4PTZC@9989,KOG3750@1,KOG3750@2759
COG Functional cat.I
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816832.2158716-CDS-M-pyrifera_M_contig91928:207..6361622816832.2158716-CDS-M-pyrifera_M_contig91928:207..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91928 208..636 -
1692278204.6985147-CDS-M-pyrifera_M_contig91928:207..6361692278204.6985147-CDS-M-pyrifera_M_contig91928:207..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91928 208..636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91928.21285.1prot_M-pyrifera_M_contig91928.21285.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91928 208..636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91928.21285.1

>prot_M-pyrifera_M_contig91928.21285.1 ID=prot_M-pyrifera_M_contig91928.21285.1|Name=mRNA_M-pyrifera_M_contig91928.21285.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
AAARVAVATALWYVFVGCFNTVQFYSGSCSNEAIAHPRHCTREGHEWSGM
DISGHCFLIVFSSLILWSESKQRPSPQGGGGALRVAVEWAVLVLRLLWFV
GLWATCCYFHEVHDKVLGCLFGAMCWYLTYGLLPLYLDLLLP*
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mRNA from alignment at M-pyrifera_M_contig91928:208..636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91928.21285.1 ID=mRNA_M-pyrifera_M_contig91928.21285.1|Name=mRNA_M-pyrifera_M_contig91928.21285.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig91928:208..636- (Macrocystis pyrifera P11B4 male)
GCTGCTGCGCGCGTGGCGGTGGCGACTGCGCTGTGGTACGTGTTCGTGGG
CTGCTTCAACACCGTGCAGTTCTACAGCGGCAGCTGCTCCAACGAGGCGA
TCGCCCACCCCCGCCACTGCACGCGCGAGGGCCACGAGTGGAGTGGCATG
GACATCAGCGGCCATTGCTTCCTCATTGTCTTCTCGTCCCTCATTCTCTG
GTCGGAGTCGAAGCAGAGGCCCAGCCCACAGGGAGGCGGCGGCGCTCTCC
GCGTGGCTGTGGAGTGGGCGGTGCTGGTGCTGCGCCTGCTGTGGTTCGTG
GGCCTGTGGGCGACGTGCTGCTACTTCCACGAGGTGCACGACAAGGTGCT
CGGCTGCCTCTTCGGCGCCATGTGCTGGTACCTCACCTACGGCCTCCTGC
CCCTCTATCTCGACCTCCTTCTGCCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91928:208..636-

>mRNA_M-pyrifera_M_contig91928.21285.1 ID=mRNA_M-pyrifera_M_contig91928.21285.1|Name=mRNA_M-pyrifera_M_contig91928.21285.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig91928:208..636- (Macrocystis pyrifera P11B4 male)
GCTGCTGCGCGCGTGGCGGTGGCGACTGCGCTGTGGTACGTGTTCGTGGG
CTGCTTCAACACCGTGCAGTTCTACAGCGGCAGCTGCTCCAACGAGGCGA
TCGCCCACCCCCGCCACTGCACGCGCGAGGGCCACGAGTGGAGTGGCATG
GACATCAGCGGCCATTGCTTCCTCATTGTCTTCTCGTCCCTCATTCTCTG
GTCGGAGTCGAAGCAGAGGCCCAGCCCACAGGGAGGCGGCGGCGCTCTCC
GCGTGGCTGTGGAGTGGGCGGTGCTGGTGCTGCGCCTGCTGTGGTTCGTG
GGCCTGTGGGCGACGTGCTGCTACTTCCACGAGGTGCACGACAAGGTGCT
CGGCTGCCTCTTCGGCGCCATGTGCTGGTACCTCACCTACGGCCTCCTGC
CCCTCTATCTCGACCTCCTTCTGCCCTAGGCTGCTGCGCGCGTGGCGGTG
GCGACTGCGCTGTGGTACGTGTTCGTGGGCTGCTTCAACACCGTGCAGTT
CTACAGCGGCAGCTGCTCCAACGAGGCGATCGCCCACCCCCGCCACTGCA
CGCGCGAGGGCCACGAGTGGAGTGGCATGGACATCAGCGGCCATTGCTTC
CTCATTGTCTTCTCGTCCCTCATTCTCTGGTCGGAGTCGAAGCAGAGGCC
CAGCCCACAGGGAGGCGGCGGCGCTCTCCGCGTGGCTGTGGAGTGGGCGG
TGCTGGTGCTGCGCCTGCTGTGGTTCGTGGGCCTGTGGGCGACGTGCTGC
TACTTCCACGAGGTGCACGACAAGGTGCTCGGCTGCCTCTTCGGCGCCAT
GTGCTGGTACCTCACCTACGGCCTCCTGCCCCTCTATCTCGACCTCCTTC
TGCCCTAG
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