mRNA_M-pyrifera_M_contig91923.21283.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91923.21283.1
Unique NamemRNA_M-pyrifera_M_contig91923.21283.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A6C1P193_9BACT (TonB-dependent receptor n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6C1P193_9BACT)

HSP 1 Score: 168 bits (426), Expect = 5.910e-44
Identity = 97/253 (38.34%), Postives = 138/253 (54.55%), Query Frame = 1
Query:    7 GFTRTNLLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDFFEDNGADASQLGQRVLFGDPQNIAQAFYNNIDNTFFNNLNVNSQVNEGDELTLQTNFTFPFDL-NKVSGYLKVGAKYRTIDRTNDREQLGRG-LYYGGDEGARDALYQSLPQLDLPEGNNLFSLSLFQDDYSRSNFLDSDYPLGYTLDPNKLLLVTSVLEDGYFFYDGQGSLGNDYQGSEEYGAVYAM 759
            G  R N L     RH Y++S  ++ T++ T    +EQDF ++  DVG S  +S  +SP NYY++F E++        +   F  P  +A+ F NNI+ TF N  NV ++    +E+TLQ N   PF   N VSGY K G K+R ++R+ D  Q G   L++GG +  RD +    P L L  G     +S FQD Y RSNFL  DYPLGYT+  + +  + +     +   + Q SLG+DY+G E Y A YAM
Sbjct:  387 GIQRQNQLQVSDTRHRYTMSDFETNTNLLTVGLGVEQDFKFMLIDVGASYVSSDRKSPLNYYYEFSEESAFIDDAFDEIDRFDPPGEMARLFANNIEQTFLNYGNVRTEKTNENEVTLQGNVKVPFRFGNTVSGYFKTGGKFREMNRSYDVSQFGTSQLFFGGGQEHRDFIATEFPDLGLEIGMARLPMSAFQDTYGRSNFLQGDYPLGYTIRGSSMKQIINASRGIFMQQEVQASLGDDYEGMERYTAAYAM 639          
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A2E9UHK7_9BACT (TonB-dependent receptor (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E9UHK7_9BACT)

HSP 1 Score: 151 bits (381), Expect = 6.200e-38
Identity = 90/260 (34.62%), Postives = 138/260 (53.08%), Query Frame = 1
Query:    1 SEGFTRTNLLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDFFEDNGADASQLGQRVLFGDPQNIAQAFYNNIDNTFFNNLNVNSQVNEGDELTLQTNFTFPFDLN-KVSGYLKVGAKYRTIDRTNDREQLGRGL--YYGGDEGARDALYQSLPQLDLPEGNNLFSLSLFQDDYSRSNFLDSDYPLGYTLDPNKLLLVTSVLEDG-YFFYDGQGSLGNDYQGSEEYGAVYAMANF 768
            + GF R N +N  S  H+Y++  N + T I T S  LEQ+F W  +D  IS T S+++SP +Y W+F E++  +A Q     L+    N+   F N++ NT F  ++   +V + DE   Q N   P  ++  +SG+ K G K R ++R N++ QL  G   YYGG    R ++   L +L +        +  F  DYSRSNF+D  + +GYT +P  +  ++ + +D  Y  YD   S G DY G E+Y A Y M+ F
Sbjct:  377 NSGFGRNNFMNVASDIHSYTMEDNFNTTFISTNSLTLEQEFRWFRYDFTISNTMSESKSPHDYSWEFREESARNAVQEDTLGLY----NVPSIFRNDLTNTSFYRMSRTFRVTDEDEKAYQINVEIPITISDNISGFFKTGGKIRYLNRVNNQNQLSSGSTPYYGGGADFRRSVAWGLSELAIDPEVARLPMEPFLADYSRSNFIDGRFEIGYTPEPTLMHQLSIIAQDSLYLSYDNYNSGGRDYSGKEKYDAYYIMSKF 632          
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A3C0ZMC9_9BACT (TonB-dependent receptor n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3C0ZMC9_9BACT)

HSP 1 Score: 129 bits (325), Expect = 1.870e-30
Identity = 89/272 (32.72%), Postives = 134/272 (49.26%), Query Frame = 1
Query:    4 EGFTRTNLLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDFFEDNGADASQLGQRVLFGDPQNIAQAFYNNIDNTFFNNLNVNSQVNEGDELTLQTNFTFPFDLNK-VSGYLKVGAKYRTIDRTNDREQLGR-GLYYGGDEGARDALYQSLPQLD--LPEGNN------------LFSLSLFQDDYSRSNFLDSDYPLGYTLDPNKLLLVTSVLED-GYFFYDGQGSLGNDYQGSEEYGAVYAMANF 768
            +G  R N +N  + RH Y L      TS+FT +   +QDF+W+ +DV  +KT S++ +P++  W F ++N A +    + +    PQ+       NI  T    + +     + ++ ++Q N   PF L   VSG+LK+G K+R +DR+ND  Q GR GL YG   G    L   L +L    P+  N            L  +  F  +Y+RS+FL+ DYPLGY ++   +  +T  L     +     GS G DY G E Y A Y MA F
Sbjct:  365 DGLYRINRMNVNANRHYYDLEDRSGTTSLFTGALGAKQDFDWIRYDVSFAKTASRSNNPEDRTWTFVQENAAFSGVTNETMANEVPQHATVD--TNI--TGLAEMYIYDTTRDENQTSIQFNVQMPFHLGDFVSGHLKMGGKFRWLDRSNDENQYGRNGLQYGSSTGLNQPLTIMLKRLSQQFPDEFNFSTDSTTARKYGLLPIWRFSSNYTRSDFLNGDYPLGYVVESATMNKLTDALNGTAEWLRYAIGSRGRDYDGIERYQAGYFMAEF 632          
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A2H6EWK8_9BACT (Catecholate siderophore receptor CirA n=1 Tax=bacterium BMS3Abin05 TaxID=2005713 RepID=A0A2H6EWK8_9BACT)

HSP 1 Score: 127 bits (318), Expect = 1.590e-29
Identity = 85/272 (31.25%), Postives = 130/272 (47.79%), Query Frame = 1
Query:    4 EGFTRTNLLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDFFEDNGA-DASQLGQRVLFGDPQNIAQAFYNNIDNTFFNNLNVNSQVNEGDELTLQTNFTFPFDLNK-VSGYLKVGAKYRTIDRTNDREQLGR-GLYYGGDEGARDALYQSLPQLD--------------LPEGNNLFSLSLFQDDYSRSNFLDSDYPLGYTLDPNKLL-LVTSVLEDGYFFYDGQGSLGNDYQGSEEYGAVYAMAN 765
            +G    N +     RH Y+L      TSIFT S  ++Q+F W+++D+ +S+T S+NE P    W F ++N A   +++G       P  I      +  NT F +  + +   + +    Q N   PF     +SGY+K+G K+R ++R ND+EQ GR G+ YGG  G    L  +L  L               L   N +  +S     Y+R NFL+ +YPLG+  D   +  ++ ++   G       GS+G DY G E Y A Y MAN
Sbjct:  359 DGLYHINRMAVRYNRHYYNLDDKAGSTSIFTGSLGMQQNFGWIHYDLNLSRTASRNEIPNERTWSFVQENAAFQTTRIGPDTP---PDQIPSLATIDTSNTGFASAFIYNTKLDENTTAFQLNVKMPFHFGTDISGYIKMGGKFRWLNRRNDQEQNGRDGIQYGGSAGVNSVLASALKFLSTNYPARWNWKNDSTLVRRNGVLPISRVLSSYTRHNFLNGEYPLGFVADQTLMNEIMNAIFATGENRRYSVGSIGRDYHGIERYRAGYLMAN 627          
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A7C1HV20_9BACT (TonB-dependent receptor n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1HV20_9BACT)

HSP 1 Score: 122 bits (305), Expect = 8.570e-28
Identity = 83/270 (30.74%), Postives = 131/270 (48.52%), Query Frame = 1
Query:    4 EGFTRTNLLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDFFEDNGADASQLGQRV-LFGDPQNIAQAFYNNIDNTFFNNLNVNSQVNEGDELTLQTNFTFPFDL-NKVSGYLKVGAKYRTIDRTNDREQLGR-GLYYGGDEGARDALYQSLPQLD--------------LPEGNNLFSLSLFQDDYSRSNFLDSDYPLGYTLDPNKL-LLVTSVLEDGYFFYDGQGSLGNDYQGSEEYGAVYAM 759
            +G  R + ++    RH Y L K    TSIFT +  +EQ+F+W+ +D+  ++T+S+  +P    W F ++N A    L  R+  +  P  I      + +NT  +++ +       +E + Q N   PF   N++ G +K+G K+R +DR ND E+ GR G+ YGG  G    L   L  L               L   N +F ++    DY RS+FLD +YPLG+ +D   +  ++ ++ E G        S G DY G E Y A Y M
Sbjct:  364 DGLFRIDRMHVFDNRHYYELEKRGGTTSIFTGTFGMEQNFDWIRYDLSAARTSSRTNNPGERAWSFVQENNA---FLTARIDPYTHPNEIPAFATVDSNNTGLSSMYILDTKRHENETSFQLNAEIPFRFGNRMDGRIKLGGKFRWLDRMNDEERDGRHGIQYGGSTGVNTILTAVLQNLAEEHPDRWNWQSDSALTRQNGIFPITRVLSDYRRSDFLDGEYPLGFVVDQTLMDQMMDALFESGENRRYAIDSRGRDYDGIERYQAGYIM 630          
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A3B8VG60_9BACT (TonB-dependent receptor n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3B8VG60_9BACT)

HSP 1 Score: 121 bits (303), Expect = 1.580e-27
Identity = 83/269 (30.86%), Postives = 135/269 (50.19%), Query Frame = 1
Query:    1 SEGFTRTN-LLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDFFEDNGADASQLGQRVLFGDPQNIAQAFYNNIDNTFFNNLNVNSQVNEGDELTLQTNFTFPFDL-NKVSGYLKVGAKYRTIDRTNDREQLGRGLYYGGDEGARDA---LYQSLPQLDLPEGNNLFSLSLF---------QDDYSRSNFLDSDYPLGYTLDPNKLLLVTSVLED-GYFFYDGQGSLGNDYQGSEEYGAVYAMA 762
            +E   R N L +A + RH Y +   DS+TSI T +   EQDF W+ +D G+S T S+  +P+++ W F ++   +A Q  +R    DP+ +      +   T   ++N+   +    +   Q N   PF + + +SG+LK G K R + R ND+ Q+G G  +     A +    +     Q+    G N++  +LF          D+Y+R NFL+ DYPLGYT+DP      ++ +++ G+       S G DY+G E Y A Y M+
Sbjct:  360 NEALNRVNQLFDAGNGRHHYDMQFYDSKTSIVTSAFSFEQDFKWLRYDAGVSYTFSEVNNPRDFMWRFSQE--GNAYQSFERYPGMDPREVVPFITPDSTRTGLADVNIRELMRNEHQQAAQLNMQTPFRMGDNISGFLKFGGKLRWLQRENDQYQVGEGGMHYNVTAANNTGQLIGCVYDQIGDRFGVNIYDEALFYQMLPIFAFNDNYNRKNFLEGDYPLGYTIDPALAKAFSNAMDECGFTRERVNESRGEDYEGIERYQAAYVMS 626          
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A1G0PCN8_9BACT (Uncharacterized protein n=2 Tax=unclassified Ignavibacteria TaxID=1798416 RepID=A0A1G0PCN8_9BACT)

HSP 1 Score: 116 bits (291), Expect = 6.240e-26
Identity = 86/283 (30.39%), Postives = 132/283 (46.64%), Query Frame = 1
Query:    1 SEGFTRTNLLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDFFEDNGADASQLGQRVLFGDPQNIAQAFYNNIDNTFFNNLNVNSQVNEGDELTLQTNFTFPFDLNK-VSGYLKVGAKYRTIDRTNDREQLGR-GLYYGGDEGARDALYQSLPQL--DLPEGNN------------LFSLSLFQDDYSRSNFLDSDYPLGYTLDPNKLLLVTSVLE---DGY----------FFYDGQGSLGNDYQGSEEYGAVYAMA 762
            +E   R N++N    RH Y+L   D  TSIFT +  +EQDFNW+ +D  +++T+S  ++P NY W+F ++N A     G      DP  I      +   T   N+ ++S   + +E + Q N   PF +   + GY+K+G K+R +DR ND+E+ G   L YGG      ++  +L  L    P+  N             F +S F  +    +FL+ +Y LG+ ++   L   T   +   D Y            Y   GS G DY G E Y A Y M+
Sbjct:  367 NESINRINVMNVAENRHQYTLENKDDVTSIFTGTVGIEQDFNWIKYDFTVARTSSLTDNPGNYEWNFIQENVA--FNTGGVYAGMDPHEIPALQTIDTLTTGLRNVFIHSTTRKENESSFQFNTQLPFMIGSDIKGYVKLGGKFRWLDRLNDQEKWGLDNLQYGGSAYQNASIVAALKYLAEHYPDDWNWESDSALARNYAAFPVSRFLLNEPSPHFLNGEYNLGFMINERILRQFTDAFKSNADQYPNNWLSYSTGTGYGDYGSDGGDYDGIERYQAAYIMS 647          
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A371QK37_9BACT (TonB-dependent receptor n=1 Tax=Rhodohalobacter sp. SW132 TaxID=2293433 RepID=A0A371QK37_9BACT)

HSP 1 Score: 109 bits (273), Expect = 1.540e-23
Identity = 83/291 (28.52%), Postives = 131/291 (45.02%), Query Frame = 1
Query:    1 SEGFTRTNLLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDF-FEDNGADASQLGQRVLFGDPQNIAQAFYNNIDNTFFNNLNVNSQVNEGDELTLQTNFTFPFDL-NKVSGYLKVGAKYRTIDRTNDREQLGRGLYYGG-------------DEGARDALYQSLPQLDLPEGNNLFS-------------LSLFQDDYSRSNFLDSD--YPLGYTLDPNKLLLVTSVLED-------GYFFYDGQGSLGNDYQGSEEYGAVYAMA 762
            +EG  RTN  N ++ R    ++     T+I T +  +EQD+ WV FD G S+T+S +ESP+NYY +F  E  GA A       +   P  +   +Y   D    +N N+N    +    T+Q N TFPF++ +++ G +K G K R  +++N++ Q GR   Y G             +      +Y   P  +L  G N++              +  F   YSR++FL  +  +P+GY + P      T   ++       G  F +   S  NDY G E   A Y M+
Sbjct:  362 NEGVRRTN--NILADRPGSEINIFSGTTTILTSAISVEQDYGWVQFDAGASRTHSASESPRNYYTNFRLETQGAGAPGFPSDSVGMTPAGVLN-YYEPNDAMRLDNTNINETRRDETNYTVQLNATFPFNIGSRIDGEVKTGGKVRWFNKSNEQNQFGRSWAYAGLAYNEQTGEPTGYEADLLRCIYNQFPNGEL-NGYNVYQEQVVNDSDYQYIPIVYFDSGYSRNDFLSGEGGFPIGYNISPEDAKAFTDAADNCVGRDGRGGIFENVNASRNNDYSGEERIDAAYIMS 648          
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A259TU78_9BACT (TonB-dependent receptor n=1 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259TU78_9BACT)

HSP 1 Score: 100 bits (249), Expect = 2.300e-20
Identity = 80/264 (30.30%), Postives = 127/264 (48.11%), Query Frame = 1
Query:   37 VSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDFFEDNGADASQLGQRVLFGDPQNIAQAFYNNIDNTF-FNNLNVNSQVNEGDELTLQTNFTFPFDLNK-VSGYLKVGAKYRTIDRTNDREQLGR-GLYYGGDEGARDALYQSLPQL-DLPEGNNLFSLSLFQDDYSR-SNFLDSDYPLGYTLDPNKLLLVTSVLED-----------------GYFFYDGQGSLGNDYQGSEEYGAVYAMA 762
            V+ R  Y+L +  +ETS+ + +  +EQDF W+ +D   + + S+ +SP+N+ W  F   G    Q  +      P+++       +D+T   + L V+    + D++ +Q N   PF L   +SGY+K G K R +DRT D  + GR GL Y  D    + L Q +P   D     +   +     DY R ++F D  Y LG   D ++L+ +T  L++                 G +  +  GSLG DY+GSE Y A Y MA
Sbjct:  372 VADRLAYNLERQQNETSLLSSALGVEQDFGWIQYDATATLSTSRAKSPENFTW-VFNKEGTGFGQGTEARYNVFPEDVTVL----VDSTTELSQLWVDDSRLDEDQMGVQANLQAPFRLGDFISGYVKTGGKLRWLDRTFDTNRFGRQGLQYP-DAQLYECLAQGVPDFADQFRNGDRLPIGSVLTDYDRGTDFFDGVYGLGLVPDEDRLMELTRALQNPDFCSDPRDVPGAEVYFGEYIPESIGSLGRDYEGSENYQAGYVMA 629          
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Match: A0A7C3D555_9BACT (TonB-dependent receptor n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3D555_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 7.690e-20
Identity = 79/253 (31.23%), Postives = 124/253 (49.01%), Query Frame = 1
Query:   16 RTNLLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGISKTNSKNESPKNYYWDFFEDNGADASQLGQRVLFGDPQNIAQAFYNNIDNTFFNNLNVNSQVNEGDELT--LQTNFTFPFDLNKVSGYLKVGAKYRTIDRTNDREQLGRGLYYGGDEGARDALYQSLPQLD--LPEGNNLFSLSLFQD-DYSRSNFLDSDYPLGYTLDPNKLLLVTSVLEDGYFFYDGQGSLGNDYQGSEEYGAVYAM 759
            RT   +     H Y L+  DS   I T + +LEQ+   +  D GIS T++ N+ P    +   E  GA    +        P  I +   N++++ F N+++      E  E    L   +T  F  +K+ GY+K G K +  +R  D E     + +GG +  RDA+ Q+ P +   +P G+     SLF D DY  SNFL  +Y + +++    L   T+ + DG +FYD Q S+ +DY G+E+Y A YAM
Sbjct:  367 RTETYDVDGFTHHYDLNDADSRLGILTSALKLEQNVGALLADGGISYTSAVNKVPDRLVFSAIE-TGAFQPNIDPTAP---PTKIPEFAKNDLNDAFLNDISRQHSFTEESERAAYLDLKYTLRFT-DKIGGYIKFGGKIKHKERKYDVESRRVPIDWGGRQRERDAVLQAFPWMQEVVPLGSKRLPYSLFMDKDYHPSNFLGGNYVI-HSMPDLDLAWKTAHVLDGMYFYDYQKSIKDDYSGTEDYRAAYAM 613          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91923.21283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6C1P193_9BACT5.910e-4438.34TonB-dependent receptor n=1 Tax=Balneolaceae bacte... [more]
A0A2E9UHK7_9BACT6.200e-3834.62TonB-dependent receptor (Fragment) n=1 Tax=Balneol... [more]
A0A3C0ZMC9_9BACT1.870e-3032.72TonB-dependent receptor n=1 Tax=Bacteroidetes bact... [more]
A0A2H6EWK8_9BACT1.590e-2931.25Catecholate siderophore receptor CirA n=1 Tax=bact... [more]
A0A7C1HV20_9BACT8.570e-2830.74TonB-dependent receptor n=1 Tax=bacterium TaxID=18... [more]
A0A3B8VG60_9BACT1.580e-2730.86TonB-dependent receptor n=1 Tax=Bacteroidetes bact... [more]
A0A1G0PCN8_9BACT6.240e-2630.39Uncharacterized protein n=2 Tax=unclassified Ignav... [more]
A0A371QK37_9BACT1.540e-2328.52TonB-dependent receptor n=1 Tax=Rhodohalobacter sp... [more]
A0A259TU78_9BACT2.300e-2030.30TonB-dependent receptor n=1 Tax=Rubricoccus marinu... [more]
A0A7C3D555_9BACT7.690e-2031.23TonB-dependent receptor n=1 Tax=Bacteroidetes bact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91923contigM-pyrifera_M_contig91923:1..768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score124.8
Seed ortholog evalue5.9e-26
Seed eggNOG ortholog1191523.MROS_2628
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transport
EggNOG OGsCOG1629@1,COG1629@2,COG4771@2
COG Functional cat.P
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size768
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816832.1398087-CDS-M-pyrifera_M_contig91923:0..7681622816832.1398087-CDS-M-pyrifera_M_contig91923:0..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91923 1..768 -
1692278204.6540182-CDS-M-pyrifera_M_contig91923:0..7681692278204.6540182-CDS-M-pyrifera_M_contig91923:0..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91923 1..768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91923.21283.1prot_M-pyrifera_M_contig91923.21283.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91923 1..768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91923.21283.1

>prot_M-pyrifera_M_contig91923.21283.1 ID=prot_M-pyrifera_M_contig91923.21283.1|Name=mRNA_M-pyrifera_M_contig91923.21283.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=256bp
SEGFTRTNLLNAVSRRHTYSLSKNDSETSIFTFSTQLEQDFNWVNFDVGI
SKTNSKNESPKNYYWDFFEDNGADASQLGQRVLFGDPQNIAQAFYNNIDN
TFFNNLNVNSQVNEGDELTLQTNFTFPFDLNKVSGYLKVGAKYRTIDRTN
DREQLGRGLYYGGDEGARDALYQSLPQLDLPEGNNLFSLSLFQDDYSRSN
FLDSDYPLGYTLDPNKLLLVTSVLEDGYFFYDGQGSLGNDYQGSEEYGAV
YAMANF
back to top

mRNA from alignment at M-pyrifera_M_contig91923:1..768-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91923.21283.1 ID=mRNA_M-pyrifera_M_contig91923.21283.1|Name=mRNA_M-pyrifera_M_contig91923.21283.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig91923:1..768- (Macrocystis pyrifera P11B4 male)
AGCGAAGGATTTACTAGGACAAATTTACTGAATGCAGTAAGTAGAAGACA TACTTACAGCTTGTCAAAAAATGATAGTGAAACTTCCATTTTTACATTTT CGACTCAATTAGAACAAGATTTTAACTGGGTTAATTTTGATGTTGGGATT TCAAAGACAAATTCAAAAAATGAGTCACCAAAGAATTATTATTGGGACTT TTTTGAAGATAATGGGGCAGATGCGTCACAATTAGGGCAAAGAGTATTAT TTGGTGATCCACAAAACATTGCACAAGCATTTTATAACAATATTGACAAT ACATTTTTCAATAATCTAAATGTAAATAGTCAAGTAAATGAAGGTGACGA ATTAACATTACAAACAAACTTCACATTCCCTTTCGATTTAAATAAAGTTA GTGGCTACTTAAAAGTTGGAGCTAAGTATAGAACCATTGATAGAACTAAT GACAGAGAACAACTTGGTAGAGGATTATACTATGGTGGAGATGAAGGTGC TCGAGATGCTCTTTACCAAAGTCTACCTCAATTAGATCTTCCAGAAGGTA ACAACCTTTTCTCATTATCCCTTTTCCAAGACGATTATTCGAGAAGTAAC TTTCTGGATAGTGATTATCCACTCGGATATACTCTAGATCCAAATAAGCT ATTACTTGTAACAAGTGTACTTGAAGACGGTTATTTCTTTTATGATGGAC AAGGCTCTTTAGGAAATGACTACCAAGGTTCTGAAGAATATGGAGCTGTT TATGCTATGGCCAATTTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig91923:1..768-

>mRNA_M-pyrifera_M_contig91923.21283.1 ID=mRNA_M-pyrifera_M_contig91923.21283.1|Name=mRNA_M-pyrifera_M_contig91923.21283.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1536bp|location=Sequence derived from alignment at M-pyrifera_M_contig91923:1..768- (Macrocystis pyrifera P11B4 male)
AGCGAAGGATTTACTAGGACAAATTTACTGAATGCAGTAAGTAGAAGACA
TACTTACAGCTTGTCAAAAAATGATAGTGAAACTTCCATTTTTACATTTT
CGACTCAATTAGAACAAGATTTTAACTGGGTTAATTTTGATGTTGGGATT
TCAAAGACAAATTCAAAAAATGAGTCACCAAAGAATTATTATTGGGACTT
TTTTGAAGATAATGGGGCAGATGCGTCACAATTAGGGCAAAGAGTATTAT
TTGGTGATCCACAAAACATTGCACAAGCATTTTATAACAATATTGACAAT
ACATTTTTCAATAATCTAAATGTAAATAGTCAAGTAAATGAAGGTGACGA
ATTAACATTACAAACAAACTTCACATTCCCTTTCGATTTAAATAAAGTTA
GTGGCTACTTAAAAGTTGGAGCTAAGTATAGAACCATTGATAGAACTAAT
GACAGAGAACAACTTGGTAGAGGATTATACTATGGTGGAGATGAAGGTGC
TCGAGATGCTCTTTACCAAAGTCTACCTCAATTAGATCTTCCAGAAGGTA
ACAACCTTTTCTCATTATCCCTTTTCCAAGACGATTATTCGAGAAGTAAC
TTTCTGGATAGTGATTATCCACTCGGATATACTCTAGATCCAAATAAGCT
ATTACTTGTAACAAGTGTACTTGAAGACGGTTATTTCTTTTATGATGGAC
AAGGCTCTTTAGGAAATGACTACCAAGGTTCTGAAGAATATGGAGCTGTT
TATGCTATGGCCAATTTTAGCGAAGGATTTACTAGGACAAATTTACTGAA
TGCAGTAAGTAGAAGACATACTTACAGCTTGTCAAAAAATGATAGTGAAA
CTTCCATTTTTACATTTTCGACTCAATTAGAACAAGATTTTAACTGGGTT
AATTTTGATGTTGGGATTTCAAAGACAAATTCAAAAAATGAGTCACCAAA
GAATTATTATTGGGACTTTTTTGAAGATAATGGGGCAGATGCGTCACAAT
TAGGGCAAAGAGTATTATTTGGTGATCCACAAAACATTGCACAAGCATTT
TATAACAATATTGACAATACATTTTTCAATAATCTAAATGTAAATAGTCA
AGTAAATGAAGGTGACGAATTAACATTACAAACAAACTTCACATTCCCTT
TCGATTTAAATAAAGTTAGTGGCTACTTAAAAGTTGGAGCTAAGTATAGA
ACCATTGATAGAACTAATGACAGAGAACAACTTGGTAGAGGATTATACTA
TGGTGGAGATGAAGGTGCTCGAGATGCTCTTTACCAAAGTCTACCTCAAT
TAGATCTTCCAGAAGGTAACAACCTTTTCTCATTATCCCTTTTCCAAGAC
GATTATTCGAGAAGTAACTTTCTGGATAGTGATTATCCACTCGGATATAC
TCTAGATCCAAATAAGCTATTACTTGTAACAAGTGTACTTGAAGACGGTT
ATTTCTTTTATGATGGACAAGGCTCTTTAGGAAATGACTACCAAGGTTCT
GAAGAATATGGAGCTGTTTATGCTATGGCCAATTTT
back to top