mRNA_M-pyrifera_M_contig919.21280.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig919.21280.1
Unique NamemRNA_M-pyrifera_M_contig919.21280.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: A0A6H5JEB5_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB5_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 8.760e-44
Identity = 82/98 (83.67%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:    1 PHRGVHSIQELAFLDLKYEVDTVRPGMEAKTLTVLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQ 294
            P+RG  SIQELAFLDLKYEV+ +RPGMEA+TL VL+GVSGQANS EMLALMGPSGSGKTSLLNVLAQR P KSV+GGVFVDG P+S+SFKRRMGFVFQ
Sbjct:   31 PNRG-DSIQELAFLDLKYEVENIRPGMEAETLKVLEGVSGQANSGEMLALMGPSGSGKTSLLNVLAQRVPHKSVTGGVFVDGSPLSKSFKRRMGFVFQ 127
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BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: A0A835YP26_9STRA (ATP-binding cassette superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP26_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.980e-25
Identity = 61/125 (48.80%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    7 RGVHSIQELAFLDLKYEVDTVRPGM-----------------------------EAKTLTVLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQ 294
            +G   IQEL+FLDL Y +D    G                              E   + +LD VSG+A S EMLALMGPSGSGKTSLLNVLAQR P K+V GG +VDG+P++++FKR+MGFVFQ
Sbjct:   41 KGSTRIQELSFLDLCYSIDAPTMGKQRVPRKDGERRRSSLFSRSRNGDAGGKAGEKAKMNILDHVSGEARSGEMLALMGPSGSGKTSLLNVLAQRVPSKNVHGGTYVDGKPLTKAFKRQMGFVFQ 165
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BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: A0A6U1MQ19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MQ19_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.010e-19
Identity = 48/95 (50.53%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:   22 IQELAFLDLKYEVDTVRPGMEAKTLT----VLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQ 294
            +++  F DL Y+V  V+   + +++     +L  VSG  +  +M+ALMGPSGSGKTSLLNVLAQR    SVSG +F++G P+++S+KRRMGFVFQ
Sbjct:   67 VEQFDFQDLSYQV-RVKGAAKQQSVQGMKQILSNVSGTVHRGDMVALMGPSGSGKTSLLNVLAQRVDQSSVSGKIFINGLPVTKSWKRRMGFVFQ 160
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BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: A0A067LFX2_JATCU (ABC transporter domain-containing protein n=3 Tax=Jatropha curcas TaxID=180498 RepID=A0A067LFX2_JATCU)

HSP 1 Score: 73.2 bits (178), Expect = 7.230e-13
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   31 LAFLDLKYEVDTVRPGMEAKTLTVLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQ 294
            L F ++KY+V + +         VL G+SG A+  E+LALMGPSG GKTSLLN+L+ R   K  SG +  +GRP ++S KRR+GFV Q
Sbjct:  115 LKFQEVKYKVYSDK--------YVLHGISGSAHPGEVLALMGPSGGGKTSLLNLLSGRV--KFTSGSIAYNGRPYTKSLKRRIGFVTQ 192
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BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: A0A642V5Q7_9ASCO (ABC transporter domain-containing protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642V5Q7_9ASCO)

HSP 1 Score: 73.2 bits (178), Expect = 7.480e-13
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   82 EAKTLTVLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQARMH 306
            + KT T+L  V G     ++ ALMG SG+GKT+LLNVL+QRA   +V+G ++V+GRP+  +FKRR G+V Q  +H
Sbjct:  535 QEKTRTLLHDVQGYVVPGKLTALMGESGAGKTTLLNVLSQRANLGTVTGDIYVNGRPVDETFKRRTGYVQQQDVH 609
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BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: A0A1E4TST5_PACTA (Uncharacterized protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TST5_PACTA)

HSP 1 Score: 72.4 bits (176), Expect = 1.410e-12
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   82 EAKTLTVLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQARMH 306
            +  T  +LD + G      M ALMG SG+GKT+LLNVLAQR     ++G +FV+GRP+  SFKRR G+V Q  +H
Sbjct:  855 DGATRMLLDNIQGYVKPGTMTALMGESGAGKTTLLNVLAQRVNFGVITGDMFVNGRPIDSSFKRRTGYVQQQDLH 929
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BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: A0A2I0W6P3_9ASPA (ABC transporter G family member 25 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W6P3_9ASPA)

HSP 1 Score: 72.0 bits (175), Expect = 1.820e-12
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:   31 LAFLDLKYEVDTV-----------RPGMEAKTLTVLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQ 294
            L F+DL Y V               P M  +  T+LDG++GQ  S ++LA++GPSGSGK++LL +LA R P +   G V  +GRP SRS  RR+GFV Q
Sbjct:   28 LQFIDLSYRVKLTGKNTCGGLARGTPQMPEER-TILDGITGQVASGQLLAVLGPSGSGKSTLLTILAGRLPGRH-GGSVLANGRPASRSIFRRIGFVPQ 124
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BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: UPI00053C9ADD (LOW QUALITY PROTEIN: ABC transporter G family member 22 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9ADD)

HSP 1 Score: 72.0 bits (175), Expect = 1.850e-12
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   31 LAFLDLKYEVDTVRPGMEAKTLTVLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQ 294
            L F D+ Y+V  ++    ++   +L+G+SG  +  E+LALMGPSGSGKT+LL++L+ R P  SV G V  + +P S+  K ++GFV Q
Sbjct:  156 LKFTDVAYKV-VIKGITSSEEKEILNGISGNVDPGEVLALMGPSGSGKTTLLSLLSGRLPQPSVGGSVTYNDKPYSKFLKSKIGFVTQ 242
[Close]
BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: A0A1B2JH71_PICPA (BA75_04476T0 n=3 Tax=Komagataella TaxID=460517 RepID=A0A1B2JH71_PICPA)

HSP 1 Score: 71.2 bits (173), Expect = 3.570e-12
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   91 TLTVLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQARMH 306
            T  +L+ V G      M ALMG SG+GKT+LLN L+QR    +++G +FV+GRP+  SFKRR GFV Q+ +H
Sbjct:  846 TRQLLNDVQGYVKPGTMTALMGESGAGKTTLLNTLSQRINFGTITGDIFVNGRPLDSSFKRRTGFVQQSDLH 917
[Close]
BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Match: A0A5N5D693_9PEZI (ZEB2-regulated ABC transporter 1 n=2 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=A0A5N5D693_9PEZI)

HSP 1 Score: 70.1 bits (170), Expect = 9.080e-12
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   73 PGMEAKTLTVLDGVSGQANSKEMLALMGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQARMH 306
            P  + ++  +LD VSG      + ALMG SG+GKT+LL++LAQR     V+G +FVDGRP+S SF R++G+  Q  +H
Sbjct:  853 PIRKGQSRRILDDVSGWVQPGTLTALMGVSGAGKTTLLDILAQRRSVGVVTGDLFVDGRPLSASFPRQVGYAQQQDVH 930
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig919.21280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEB5_9PHAE8.760e-4483.67ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835YP26_9STRA1.980e-2548.80ATP-binding cassette superfamily n=1 Tax=Tribonema... [more]
A0A6U1MQ19_9STRA6.010e-1950.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067LFX2_JATCU7.230e-1348.86ABC transporter domain-containing protein n=3 Tax=... [more]
A0A642V5Q7_9ASCO7.480e-1349.33ABC transporter domain-containing protein n=1 Tax=... [more]
A0A1E4TST5_PACTA1.410e-1249.33Uncharacterized protein n=1 Tax=Pachysolen tannoph... [more]
A0A2I0W6P3_9ASPA1.820e-1244.44ABC transporter G family member 25 n=2 Tax=Dendrob... [more]
UPI00053C9ADD1.850e-1243.18LOW QUALITY PROTEIN: ABC transporter G family memb... [more]
A0A1B2JH71_PICPA3.570e-1250.00BA75_04476T0 n=3 Tax=Komagataella TaxID=460517 Rep... [more]
A0A5N5D693_9PEZI9.080e-1246.15ZEB2-regulated ABC transporter 1 n=2 Tax=Lasiodipl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig919contigM-pyrifera_M_contig919:16508..18103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue2e-36
Seed eggNOG ortholog2880.D8LI56
KEGG koko:K05681,ko:K21396
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.8810506-CDS-M-pyrifera_M_contig919:16507..166781622816831.8810506-CDS-M-pyrifera_M_contig919:16507..16678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig919 16508..16678 -
1692278204.46485-CDS-M-pyrifera_M_contig919:16507..166781692278204.46485-CDS-M-pyrifera_M_contig919:16507..16678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig919 16508..16678 -
1622816831.8963428-CDS-M-pyrifera_M_contig919:17953..181031622816831.8963428-CDS-M-pyrifera_M_contig919:17953..18103Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig919 17954..18103 -
1692278204.4764163-CDS-M-pyrifera_M_contig919:17953..181031692278204.4764163-CDS-M-pyrifera_M_contig919:17953..18103Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig919 17954..18103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig919.21280.1prot_M-pyrifera_M_contig919.21280.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig919 16508..18103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig919.21280.1

>prot_M-pyrifera_M_contig919.21280.1 ID=prot_M-pyrifera_M_contig919.21280.1|Name=mRNA_M-pyrifera_M_contig919.21280.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
PHRGVHSIQELAFLDLKYEVDTVRPGMEAKTLTVLDGVSGQANSKEMLAL
MGPSGSGKTSLLNVLAQRAPPKSVSGGVFVDGRPMSRSFKRRMGFVFQAR
MHGQSI*
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mRNA from alignment at M-pyrifera_M_contig919:16508..18103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig919.21280.1 ID=mRNA_M-pyrifera_M_contig919.21280.1|Name=mRNA_M-pyrifera_M_contig919.21280.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at M-pyrifera_M_contig919:16508..18103- (Macrocystis pyrifera P11B4 male)
CCGCACAGGGGGGTCCATTCGATCCAGGAGCTCGCGTTCCTCGACCTTAA
GTACGAGGTGGACACTGTCAGACCGGGCATGGAAGCTAAAACCCTCACCG
TCCTTGACGGCGTGTCTGGCCAGGCCAACTCGAAGGAGATGCTCGCCTTG
GTGAGCTACGTGCAACATCATTGGGATGGCTGACTGTCGCGTATACGGGG
ACTATTACAGTTGGTCGCGTGCGGTAGTTTGCAGCAGAGTTTACCCCTTG
GGGTGTTGAAGATAGCGGCTGTGAAGATGTGATCCTGCCGACGGCGCTAA
GTGTAATACGGCCCGAAGAATGAGGTGAGGGAATGGGGATGCAGGAACTG
GCTCGGAAGGCAGCTTCTCTTCTGCAGGAGACTTCTTTCCTTTGCTGTCG
TGTTGTTGCCGTTTAGGATGAGAGAAAAGGGGGGTAGTCTGAGAGTGATT
CGATTGGGGCGTGATTCGAGGTATCAGGTCCACCCTGCTCCCTTCCGATG
GATTCGAAACCCCCTGTAATTTCACGGGTATGTTCGGGTCCTACCGCCGA
CGCCGAATGTGAAGGTATTACCTAATGAGCTATAGAGGTAAAGGCCGATC
GATTACCCAGCCCACGGTAATCCTCAAAACACGACCACAACAATGACGAT
GAATTATGTTGTCAACCGTCTACGAAAAGCGACGTACGGGTAGGTTCACG
TTGCCCCCGTGCCGTGCGATTCCTTTCGACCATTGTAACTCGGACACTAC
CACCTGTAATCTGCATCATTCCCCATTCACGCGGTGGCCGTTCCCGAAAA
TCGCCGCTTTATACGTATGTATCGTCAATTTTCCCCTGTGAAGTCCTAAG
GGGGTTAACGGTTCTGTGTACTGACTCAGCGCGTTTGTTATTAATAGTAG
TGAAGACGAAGTCGAGCTGTCATAGGTGTCTTGATTCATCGCCCAACTCG
TGTCTAGCCGTCGATCTCGGCCAACTTACAGCCCTATACTCATGGGGGGT
ATCACGCACCCTCCGTATACCGGCCAGCCGGTTTCTACTGCAGCAACACA
GAAGCTGTGAAGAATCCGGTGTGAACAATGGGGAATTCCTCGAAAAAATA
AGTATCCACCAGGTATGCAGTACCGTACACACAGTACGAGTATACATGTA
GAACCCGGTGTAGTAATGGTGGCTGCTTGTTTGTATAGGTGCTGAAAAAA
TCAACGCAAACATGTACTGCTGTAGTAGAATCCGATATACTGGTGAATGC
ATCAAACATAAGCATCCACCACTTTTGAATCCGGTGGCTTTCCACAGGCC
AATATCGGGGTTTCCCACTATATGGAGGGGACCTTCCCGATGCTATGCCT
CGTACAGCAGTAGCACCTGACAAAAACGAATGTACCGCTGCTCTTGCCGT
GACCGGCTCTCTAACCATCGTCCAGATGGGGCCCTCCGGCAGCGGAAAGA
CGAGCCTCCTCAACGTCCTGGCGCAGAGGGCGCCACCGAAGAGCGTGTCC
GGTGGCGTCTTCGTCGACGGTAGGCCTATGTCCAGGTCGTTCAAGCGACG
GATGGGGTTCGTATTTCAGGCGCGTATGCACGGTCAAAGTATATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig919:16508..18103-

>mRNA_M-pyrifera_M_contig919.21280.1 ID=mRNA_M-pyrifera_M_contig919.21280.1|Name=mRNA_M-pyrifera_M_contig919.21280.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig919:16508..18103- (Macrocystis pyrifera P11B4 male)
CCGCACAGGGGGGTCCATTCGATCCAGGAGCTCGCGTTCCTCGACCTTAA
GTACGAGGTGGACACTGTCAGACCGGGCATGGAAGCTAAAACCCTCACCG
TCCTTGACGGCGTGTCTGGCCAGGCCAACTCGAAGGAGATGCTCGCCTTG
CCGCACAGGGGGGTCCATTCGATCCAGGAGCTCGCGTTCCTCGACCTTAA
GTACGAGGTGGACACTGTCAGACCGGGCATGGAAGCTAAAACCCTCACCG
TCCTTGACGGCGTGTCTGGCCAGGCCAACTCGAAGGAGATGCTCGCCTTG
ATGGGGCCCTCCGGCAGCGGAAAGACGAGCCTCCTCAACGTCCTGGCGCA
GAGGGCGCCACCGAAGAGCGTGTCCGGTGGCGTCTTCGTCGACGGTAGGC
CTATGTCCAGGTCGTTCAAGCGACGGATGGGGTTCGTATTTCAGGCGCGT
ATGCACGGTCAAAGTATATAAATGGGGCCCTCCGGCAGCGGAAAGACGAG
CCTCCTCAACGTCCTGGCGCAGAGGGCGCCACCGAAGAGCGTGTCCGGTG
GCGTCTTCGTCGACGGTAGGCCTATGTCCAGGTCGTTCAAGCGACGGATG
GGGTTCGTATTTCAGGCGCGTATGCACGGTCAAAGTATATAA
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