mRNA_M-pyrifera_M_contig91880.21275.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91880.21275.1
Unique NamemRNA_M-pyrifera_M_contig91880.21275.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91880.21275.1 vs. uniprot
Match: A0A1V5YTU4_9BACT (von Willebrand factor type A domain protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YTU4_9BACT)

HSP 1 Score: 164 bits (415), Expect = 1.960e-42
Identity = 96/257 (37.35%), Postives = 140/257 (54.47%), Query Frame = 1 
Query:    1 WEELNNQSVLTYTTPKEVDFQYLLSGTYRLPDDTIIEGPFQRNAVFTLGDPRIGQVSLRSAGIVEDLSTVDPEQRFRAEVYVYADYVPRNIRSFSFRFMPQAATDLSAANQALLGNALMQIERADGGLLDDDNVGTSDWRLITEADGRVRIFTDDDNFLPVGSFGALLKITFTNLTDYVGAFGTGARQPEFFLSMRMDNRPYISPQSEGQPSSTKFFLYPGGIAHDGRALSIALGESDLASPAQFVEFLSEIPGFDP 771
            W EL+NQ VL+Y TP +   +Y +  T+R P    +   F+ + ++  GD   GQ+SL + GI  + +     +R RAEVYV ADYVPRN+  F  RF+ Q      AA +A    A + +E    GLL   +    +WR+I++ +    + T ++N LP  S G LL+I F NL  +V A        EF+L MR+DN  Y +P S  +PS T +F YP G  +  R+L I    SDLA+PA+ +  L+  PG +P
Sbjct:  883 WNELSNQIVLSYVTPLQRSGKYSIIATWRTPQGKDVRAMFEEDGMYYHGDVHGGQLSLYTTGISLNRTAASDAERARAEVYVRADYVPRNVNFFRMRFISQLDAQAPAAVRAAFDAAALTVEIDQEGLLYFSDGSKPNWRMISKGNHVYELLTTEENPLPYASSGNLLRIRFDNLLPFVDACAVAGIPAEFYLGMRVDNSVYYAPASNTEPSGTVYFTYPSGPLNPDRSLWIG-DASDLAAPARSIADLAA-PGINP 1137
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BLAST of mRNA_M-pyrifera_M_contig91880.21275.1 vs. uniprot
Match: A0A7C8EGR1_9BACT (VWA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8EGR1_9BACT)

HSP 1 Score: 108 bits (270), Expect = 3.790e-23
Identity = 83/248 (33.47%), Postives = 116/248 (46.77%), Query Frame = 1 
Query:    1 WEELNNQSVLTYTTP-KEVDFQYLLSGTYRLPDDTIIEGPFQRNAVFTLGDPRIGQVSLRSAGIVEDLSTVDPEQRFRAEVYVYADYVPRNIRSFSFRFMPQAATDLSAANQALLGNALMQIERADGGLLDDDNVGTSDWRLITE--ADGRVRIFTDDDNFLPVGSFGALLKITFTNLTDYVGAFGTGARQPEFFLSMRMDNRPYISPQSEGQPSSTKFFLYPGGIAH----DGRALSIALGESDLAS 723
            W EL  Q VLTY T   +    Y +   Y++  DT +   F+ + +F LGD R GQ++LR++GI ED           AEV+V A+YVPRN   F  RF+      L+  N  LL +        D GLL       + WR++ +   +G     T++DN +P GSFG L+K+TF  L   V  F  G          R+DN  YI+      P  TK+F YP    +    DG  +      SD A+
Sbjct:  625 WTELERQIVLTYPTLFTDETHTYSIRVEYQMDQDTALSAYFEHDGLFALGDVRAGQITLRTSGISEDGV---------AEVFVRAEYVPRNTSFFRLRFIVPDTITLTTDNFDLLED--------DAGLL-------AGWRMLEDDTCEGAFIFLTEEDNSVPYGSFGNLMKLTFEGLDPDVDRFDIG---------FRVDNAVYIN------PPFTKYFQYPNDFLNNTPGDGDFVLTVRSSSDTAT 833
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BLAST of mRNA_M-pyrifera_M_contig91880.21275.1 vs. uniprot
Match: A0A7Y5CB85_9BACT (VWA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CB85_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 7.040e-13
Identity = 73/225 (32.44%), Postives = 100/225 (44.44%), Query Frame = 1 
Query:    7 ELNNQSVLTYTTP-KEVDFQYLLSGTYRLPDDTIIEGPFQRNAVFTLG-DPRIGQVSLRSAGIVEDLSTVDPEQRFRAEVYVYADYVPRNIRSFSFRFMPQAATDLSAANQALLGNALMQIERADGGLLDDDNVGTSDWRLITEADGRVRIFTDDDNFLPVGSFGALLKITFT--NLTDYVGAFGTGARQPEFFLSMRMDNRPYISPQSEGQPSSTKFFLYPGGI 669
            EL  Q VLTY +  +E    YL++  Y+      I G FQR+AV  +G D R GQ+SLR+AGI  D +         A++++ ADYVPRNI     + +      L+     LL          DG            W L+    G     T +   L  G+FG + ++ FT  N TD V         P  F   R+DN+ Y++      P  TKFF YP GI
Sbjct:  611 ELLRQIVLTYISLFQEGSHNYLITAEYQG-----IMGSFQRDAVIAIGGDVRAGQLSLRTAGIQPDGT---------ADLFIRADYVPRNISQIKIKLLSTEQYTLTIDPDGLL----------DG------------WFLVNNGGGVYTALTSETTPLRYGAFGNMFRVQFTGLNTTDIV---------PVVF---RVDNQIYVN------PPFTKFFQYPDGI 781
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BLAST of mRNA_M-pyrifera_M_contig91880.21275.1 vs. uniprot
Match: A0A7Y5CBB8_9BACT (VWA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CBB8_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.790e-5
Identity = 60/212 (28.30%), Postives = 92/212 (43.40%), Query Frame = 1 
Query:    7 ELNNQSVLTYTTPKE-----VDFQYLLSGTYRLPDDTIIEGPFQR---NAVFTLGDPRIGQVSLRSAGIVEDLSTVDPEQRFRAEVYVYADYVPRNIRSFSFRFMPQAATDLSAANQALLGNALMQIERADGGLLDDDNVGTSDWRLITEADGRVRIFTDD--DNFLPVGSFGALLKITFTNLTDYVGAFGTGARQPEFFLSMRMDNRPYIS 612
            +L + +VL+Y T  E     + F   L+     PD  +I+G       N    +GD  +GQ+S+R+ G+V   +TV           + ADYVPRN+  F F      A             A+  +  A+GGL++        W L T   G V   T     + LP GS+G L+++TF       GA G+      F +++ +DN  Y S
Sbjct:  927 DLASHTVLSYVTLGEEESVPIRFDGALNDPNDDPDQGLIQGISDEQNINLAGIVGDILMGQISMRTTGVVSGSTTVT----------LRADYVPRNVNKFQFTLTTTEAF------------AIGIVPHAEGGLVEG-------WTL-TPLGGGVYSLTSPTPQDVLPYGSYGDLVRLTF-------GAVGS----TPFTVALNVDNTIYSS 1097
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91880.21275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1V5YTU4_9BACT1.960e-4237.35von Willebrand factor type A domain protein n=1 Ta... [more]
A0A7C8EGR1_9BACT3.790e-2333.47VWA domain-containing protein n=1 Tax=Candidatus H... [more]
A0A7Y5CB85_9BACT7.040e-1332.44VWA domain-containing protein n=1 Tax=Candidatus H... [more]
A0A7Y5CBB8_9BACT1.790e-528.30VWA domain-containing protein n=1 Tax=Candidatus H... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91880contigM-pyrifera_M_contig91880:2..772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size771
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.517623-CDS-M-pyrifera_M_contig91880:1..7721622816831.517623-CDS-M-pyrifera_M_contig91880:1..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91880 2..772 +
1692278204.2252944-CDS-M-pyrifera_M_contig91880:1..7721692278204.2252944-CDS-M-pyrifera_M_contig91880:1..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91880 2..772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91880.21275.1prot_M-pyrifera_M_contig91880.21275.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91880 2..772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91880.21275.1

>prot_M-pyrifera_M_contig91880.21275.1 ID=prot_M-pyrifera_M_contig91880.21275.1|Name=mRNA_M-pyrifera_M_contig91880.21275.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
WEELNNQSVLTYTTPKEVDFQYLLSGTYRLPDDTIIEGPFQRNAVFTLGD
PRIGQVSLRSAGIVEDLSTVDPEQRFRAEVYVYADYVPRNIRSFSFRFMP
QAATDLSAANQALLGNALMQIERADGGLLDDDNVGTSDWRLITEADGRVR
IFTDDDNFLPVGSFGALLKITFTNLTDYVGAFGTGARQPEFFLSMRMDNR
PYISPQSEGQPSSTKFFLYPGGIAHDGRALSIALGESDLASPAQFVEFLS
EIPGFDP
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mRNA from alignment at M-pyrifera_M_contig91880:2..772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91880.21275.1 ID=mRNA_M-pyrifera_M_contig91880.21275.1|Name=mRNA_M-pyrifera_M_contig91880.21275.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=771bp|location=Sequence derived from alignment at M-pyrifera_M_contig91880:2..772+ (Macrocystis pyrifera P11B4 male)
TGGGAAGAACTCAACAACCAATCGGTGCTCACCTATACCACCCCGAAGGA
AGTCGACTTTCAGTACTTGCTCTCCGGCACCTATCGTCTCCCCGACGATA
CGATTATTGAAGGCCCCTTCCAACGCAATGCCGTCTTCACGTTGGGCGAC
CCCCGCATTGGACAGGTCTCCCTGCGCTCGGCCGGCATCGTTGAAGACTT
GAGCACTGTAGATCCCGAACAACGTTTTCGGGCTGAAGTCTATGTGTATG
CCGACTACGTGCCGCGAAACATTCGCTCTTTCTCCTTCCGCTTCATGCCG
CAAGCTGCAACGGACCTCAGCGCCGCCAATCAGGCCCTGCTTGGTAACGC
GCTCATGCAAATTGAACGGGCGGACGGTGGTCTCTTGGATGACGATAACG
TGGGCACGTCCGATTGGCGACTGATCACCGAAGCCGATGGGCGGGTGCGC
ATCTTTACCGATGACGACAACTTCCTCCCGGTCGGCTCGTTCGGCGCCTT
GCTGAAAATCACCTTCACCAACCTGACGGACTACGTGGGCGCCTTTGGAA
CTGGTGCACGGCAACCAGAGTTCTTCCTCAGCATGCGCATGGATAACCGC
CCCTACATCTCGCCCCAATCAGAAGGACAACCGTCCAGCACGAAGTTCTT
CCTGTACCCTGGCGGCATTGCCCACGACGGGCGTGCACTTTCCATTGCAC
TGGGCGAAAGCGACCTGGCATCCCCCGCGCAGTTTGTCGAGTTCCTCTCG
GAAATCCCCGGCTTTGACCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91880:2..772+

>mRNA_M-pyrifera_M_contig91880.21275.1 ID=mRNA_M-pyrifera_M_contig91880.21275.1|Name=mRNA_M-pyrifera_M_contig91880.21275.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1542bp|location=Sequence derived from alignment at M-pyrifera_M_contig91880:2..772+ (Macrocystis pyrifera P11B4 male)
TGGGAAGAACTCAACAACCAATCGGTGCTCACCTATACCACCCCGAAGGA
AGTCGACTTTCAGTACTTGCTCTCCGGCACCTATCGTCTCCCCGACGATA
CGATTATTGAAGGCCCCTTCCAACGCAATGCCGTCTTCACGTTGGGCGAC
CCCCGCATTGGACAGGTCTCCCTGCGCTCGGCCGGCATCGTTGAAGACTT
GAGCACTGTAGATCCCGAACAACGTTTTCGGGCTGAAGTCTATGTGTATG
CCGACTACGTGCCGCGAAACATTCGCTCTTTCTCCTTCCGCTTCATGCCG
CAAGCTGCAACGGACCTCAGCGCCGCCAATCAGGCCCTGCTTGGTAACGC
GCTCATGCAAATTGAACGGGCGGACGGTGGTCTCTTGGATGACGATAACG
TGGGCACGTCCGATTGGCGACTGATCACCGAAGCCGATGGGCGGGTGCGC
ATCTTTACCGATGACGACAACTTCCTCCCGGTCGGCTCGTTCGGCGCCTT
GCTGAAAATCACCTTCACCAACCTGACGGACTACGTGGGCGCCTTTGGAA
CTGGTGCACGGCAACCAGAGTTCTTCCTCAGCATGCGCATGGATAACCGC
CCCTACATCTCGCCCCAATCAGAAGGACAACCGTCCAGCACGAAGTTCTT
CCTGTACCCTGGCGGCATTGCCCACGACGGGCGTGCACTTTCCATTGCAC
TGGGCGAAAGCGACCTGGCATCCCCCGCGCAGTTTGTCGAGTTCCTCTCG
GAAATCCCCGGCTTTGACCCCTGGGAAGAACTCAACAACCAATCGGTGCT
CACCTATACCACCCCGAAGGAAGTCGACTTTCAGTACTTGCTCTCCGGCA
CCTATCGTCTCCCCGACGATACGATTATTGAAGGCCCCTTCCAACGCAAT
GCCGTCTTCACGTTGGGCGACCCCCGCATTGGACAGGTCTCCCTGCGCTC
GGCCGGCATCGTTGAAGACTTGAGCACTGTAGATCCCGAACAACGTTTTC
GGGCTGAAGTCTATGTGTATGCCGACTACGTGCCGCGAAACATTCGCTCT
TTCTCCTTCCGCTTCATGCCGCAAGCTGCAACGGACCTCAGCGCCGCCAA
TCAGGCCCTGCTTGGTAACGCGCTCATGCAAATTGAACGGGCGGACGGTG
GTCTCTTGGATGACGATAACGTGGGCACGTCCGATTGGCGACTGATCACC
GAAGCCGATGGGCGGGTGCGCATCTTTACCGATGACGACAACTTCCTCCC
GGTCGGCTCGTTCGGCGCCTTGCTGAAAATCACCTTCACCAACCTGACGG
ACTACGTGGGCGCCTTTGGAACTGGTGCACGGCAACCAGAGTTCTTCCTC
AGCATGCGCATGGATAACCGCCCCTACATCTCGCCCCAATCAGAAGGACA
ACCGTCCAGCACGAAGTTCTTCCTGTACCCTGGCGGCATTGCCCACGACG
GGCGTGCACTTTCCATTGCACTGGGCGAAAGCGACCTGGCATCCCCCGCG
CAGTTTGTCGAGTTCCTCTCGGAAATCCCCGGCTTTGACCCC
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