mRNA_M-pyrifera_M_contig91785.21254.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91785.21254.1
Unique NamemRNA_M-pyrifera_M_contig91785.21254.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A0A6I6ANP9_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ANP9_9PLAN)

HSP 1 Score: 495 bits (1274), Expect = 8.320e-159
Identity = 256/257 (99.61%), Postives = 257/257 (100.00%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVLLALAIGA 771
            LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEI+DSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVLLALAIGA
Sbjct:  291 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEITDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVLLALAIGA 547          
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A0A518A8W6_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A8W6_9PLAN)

HSP 1 Score: 414 bits (1064), Expect = 1.090e-129
Identity = 206/255 (80.78%), Postives = 233/255 (91.37%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVLLALAI 765
            LG+GF AFGWMVHS+SRIL+SFGRW LL IVLGTSAGQILISRLG  ATTFLQIN LALLPV CFV G+  VLR    W+EISDSRARELVTL+GLAVFS+LAPCWL+IWNAPERLETFA LTPLFSLMESLL+GFGLLLHHRK  DESPHWSLTGSSLAIF++IMLL+NFAIAWPRV+IL+ALGIVN +SL+ LAFRGRFPLCH+PALASLT+S LLGFHVL GTLPL+G TQRM+++A+LLGRSA+VL+A+A+
Sbjct:  296 LGIGFGAFGWMVHSASRILVSFGRWQLLTIVLGTSAGQILISRLGGQATTFLQINLLALLPVVCFVAGMASVLRTALHWDEISDSRARELVTLVGLAVFSILAPCWLIIWNAPERLETFACLTPLFSLMESLLIGFGLLLHHRKDGDESPHWSLTGSSLAIFSSIMLLMNFAIAWPRVEILLALGIVNGLSLSFLAFRGRFPLCHIPALASLTVSALLGFHVLTGTLPLQGATQRMVIDAVLLGRSAMVLIAIAV 550          
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A0A2E2C1W6_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C1W6_9PLAN)

HSP 1 Score: 350 bits (899), Expect = 2.390e-107
Identity = 171/249 (68.67%), Postives = 210/249 (84.34%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIV 747
            + VGFAAFGWMV S+SRIL+SFGR  LLAIVLGTSAGQ++ISR+     +FLQ N LALLP GCF+ G+  +LR T +W EI+DSRARELVTL GLAVFSVLAPCWL++WN   RLETF+ LTPLFSLME LL+G GL+LHHRK  DE+PHW+LTGSS+A+F+A+M+LVNFAIAWPRVDIL+ LGI+N ISL++LA +GRFPLCH+PAL + TI+ LLGFH+L GT+  EG +Q  L+E++LLGRS+IV
Sbjct:  294 ISVGFAAFGWMVSSASRILVSFGRLHLLAIVLGTSAGQLIISRVASSEPSFLQTNLLALLPAGCFIIGMALILRQTLNWNEITDSRARELVTLGGLAVFSVLAPCWLLVWNTTNRLETFSCLTPLFSLMEILLLGLGLVLHHRKNGDETPHWALTGSSIAVFSALMILVNFAIAWPRVDILVVLGIINCISLSILAIQGRFPLCHIPALIAATIAGLLGFHLLTGTITWEGTSQTALIESLLLGRSSIV 542          
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A0A517VGG1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VGG1_9PLAN)

HSP 1 Score: 345 bits (885), Expect = 1.830e-105
Identity = 168/249 (67.47%), Postives = 207/249 (83.13%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIV 747
            +G+GFAAFGWMV S+SRIL+SFGR PLLA+VLGTSAGQ++ISR+     +FLQ N LALLP GCF+ G+  +L+ T  WEE++DSRARELVTL GLAVF+VLAPCWL++WN   RLETF+ LTPLFSLME LL+G GL+LHHRK  DE+PHW+LTGSS+AI A +M+L+NFAI+WPRVDILI LGIVN ISL++LA + RF LCH+PAL S  I+ LLGFH+L GT+  EG TQ  L+E++LLGRS+IV
Sbjct:  294 IGIGFAAFGWMVSSASRILVSFGRLPLLAMVLGTSAGQLIISRVASSNPSFLQTNLLALLPAGCFIIGMALILKQTLKWEEVTDSRARELVTLGGLAVFAVLAPCWLLVWNTTNRLETFSCLTPLFSLMEILLLGLGLVLHHRKNGDETPHWALTGSSIAILAGLMILINFAISWPRVDILIVLGIVNCISLSILAIQARFALCHIPALISAAIAGLLGFHLLTGTIAWEGTTQSALIESLLLGRSSIV 542          
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A0A350K466_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K466_9PLAN)

HSP 1 Score: 344 bits (882), Expect = 2.180e-105
Identity = 170/250 (68.00%), Postives = 207/250 (82.80%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVL 750
            + +GFAAFGWMV S+SRIL+SFGR+PLL IVLGTSAGQ++ISR+     TFLQ N LA+LP GCF+ G+  +L+ T  W+E++DSRARELVTL GL+VF+VLAPCWL+IWN   RLETF+ LTPLFSLME LL+G GL+LHHRK  D +PHW+LTGSS+AIF+A+M+LVNFAIAWPRVDILI LGIVN ISL+ LA +GRF LC +PAL S  I+ LLGFH+L GT+  EG +Q  L+EAMLLGRS+IVL
Sbjct:  290 ISIGFAAFGWMVSSASRILVSFGRFPLLGIVLGTSAGQLIISRVASSEPTFLQTNLLAILPAGCFIVGMALILKQTLKWKEVTDSRARELVTLGGLSVFAVLAPCWLLIWNTTNRLETFSCLTPLFSLMEILLLGLGLVLHHRKNGDATPHWALTGSSIAIFSALMILVNFAIAWPRVDILIVLGIVNCISLSSLAIQGRFALCQIPALISAAIAGLLGFHLLTGTINWEGTSQTALIEAMLLGRSSIVL 539          
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A6C4I3_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A6C4I3_9PLAN)

HSP 1 Score: 342 bits (878), Expect = 1.600e-104
Identity = 168/250 (67.20%), Postives = 207/250 (82.80%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVL 750
            + +GFAAFGWMV S+SRIL+SFGR+PLL IVLGTSAGQ++ISR+     TFLQ N LA+LP GCF+ G+  +L+ T  W+E++DSRARELVTL GL+VF+VLAPCWL+IWN   RLETF+ LTPLFSLME LL+G GL+LHHRK  D +PHW+LTGSS+AIF+A+M+L+NFAIAWPRVDILI LGIVN ISL+ LA +GRF LC +PAL S  I+ LLGFH+L GT+  EG +Q  L+EA+LLGRS+IVL
Sbjct:  290 ISIGFAAFGWMVSSASRILVSFGRFPLLGIVLGTSAGQLIISRVASSEPTFLQTNLLAILPAGCFIVGVALILKQTLKWKEVTDSRARELVTLGGLSVFAVLAPCWLLIWNTTNRLETFSCLTPLFSLMEILLLGLGLVLHHRKNGDATPHWALTGSSIAIFSALMILINFAIAWPRVDILIVLGIVNCISLSSLAIQGRFALCQIPALISAAIAGLLGFHLLTGTITWEGTSQTALIEALLLGRSSIVL 539          
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A0A517RI45_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RI45_9PLAN)

HSP 1 Score: 337 bits (863), Expect = 1.660e-102
Identity = 167/255 (65.49%), Postives = 210/255 (82.35%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVLLALAI 765
            L +GFAAF WMV S+SRIL+SFGRW LL  VLG+SAGQI+ISR+       L+ N LA LPVGCF+  L  +L++TF W+EISD+ ARELVTL GL++F+VLAPCWL++WN+  RLETFA LTPL S+ME LL+G GL+LHHRK  D++PHWSL GSS+A+F+A+M+L+NFAI+WPRVDI++ LGIVNAISLTLLA  GRF +CH+PAL S  I+ LLGFHVL  T+ L+G +QRML+EA+LLGRSAIVL++ AI
Sbjct:  281 LSIGFAAFSWMVLSASRILVSFGRWQLLIAVLGSSAGQIIISRMSISEPILLRTNLLAALPVGCFIVALASILKHTFRWKEISDALARELVTLGGLSLFAVLAPCWLLVWNSSSRLETFACLTPLVSIMEILLLGMGLVLHHRKENDDAPHWSLAGSSIAVFSALMMLMNFAISWPRVDIMLVLGIVNAISLTLLAIYGRFAVCHIPALISAAIAGLLGFHVLTDTIALQGTSQRMLIEALLLGRSAIVLISFAI 535          
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A0A518IEY5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IEY5_9PLAN)

HSP 1 Score: 337 bits (863), Expect = 1.660e-102
Identity = 165/255 (64.71%), Postives = 210/255 (82.35%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVLLALAI 765
            + +GFAAFGWMV S+SRIL+SFGRW LL  VLG+SAGQI+ISR+       L+   LA LPVGCF+  +  +L++TF W+EISD+ ARELVTL GL++F+VLAPCWL++WN+  RLETFA LTPL S+ME LL+G GL+LHHRK  D++PHWSL GSS+A+F+A+M+L+NFAIAWPRVDI+I LGIVN ISLTLLA  GRF +CH+PAL S +++ LLGFHVL  T+ L+G +QRML+EA+LLGRSAIVL++ AI
Sbjct:  282 ISIGFAAFGWMVLSASRILVSFGRWQLLIAVLGSSAGQIIISRMSISEPVLLRTTLLAALPVGCFIVAMASILKHTFTWKEISDALARELVTLGGLSLFAVLAPCWLLVWNSTSRLETFACLTPLVSIMELLLLGMGLVLHHRKENDDAPHWSLAGSSIAVFSALMMLMNFAIAWPRVDIIIVLGIVNGISLTLLAINGRFAVCHIPALISASLAGLLGFHVLTDTIALQGTSQRMLIEALLLGRSAIVLISFAI 536          
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A0A517WYY3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WYY3_9PLAN)

HSP 1 Score: 323 bits (829), Expect = 6.150e-98
Identity = 162/255 (63.53%), Postives = 204/255 (80.00%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVLLALAI 765
            L +GFAAFGWMV+S+SRIL+SFGRW LL  VLG+SAGQI+ISR+     +FLQ   LALLP+GCF+  +  +L++TF W E SDS++RELVT+ GL+VF+VLAPCWL+IW++  RLETFA LTPL S+ME +L+G GL+LH+RK  D SPHWSL GSS+AIF+A+M+LVNF IAWPRV+I+I LGIVN ISLTLLA + RF LCH+PAL S  I+ LLGFHV   T+ L G +Q  L+E++LLGRSA VL+  AI
Sbjct:  280 LSIGFAAFGWMVYSASRILVSFGRWQLLTTVLGSSAGQIMISRMSVDDPSFLQTILLALLPIGCFIVAMSSILQSTFRWIEFSDSQSRELVTIGGLSVFAVLAPCWLLIWSSTSRLETFAYLTPLLSIMEIILMGMGLVLHYRKENDHSPHWSLAGSSIAIFSALMMLVNFVIAWPRVEIMIVLGIVNCISLTLLATKARFALCHIPALVSGAIAGLLGFHVFTNTIELLGTSQNTLIESLLLGRSAAVLITFAI 534          
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Match: A0A847GWT2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GWT2_9BACT)

HSP 1 Score: 175 bits (443), Expect = 3.760e-46
Identity = 99/256 (38.67%), Postives = 152/256 (59.38%), Query Frame = 1
Query:    1 LGVGFAAFGWMVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALLPVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIWNAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLAIFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALASLTISVLLGFHVLGGTLPLEG-VTQRMLMEAMLLGRSAIVLLALAI 765
            +G+G  A GW+ +S+ R LL    W L +++L TSAGQ+LI RLG       + + LA LP+G F+   V  +     W  +S  RAR+L+ +LG++ F++ AP  L+I  +       A+L P FSL+ ++++  GLL+H R            G++LA+  A+M+     +AWPR ++LIA+G+ NA  L LLA RG  P+ H  A+  L +++L+GFH + G LP E     R L+EA+LLGRS++VL  LA+
Sbjct:  337 VGLGLLAGGWVTYSAGRALLPHDWWRLTSVILATSAGQLLIDRLGRPGLNLAETSLLAALPLGGFLVATVTQIGRAMPWWHLSGRRARQLLLVLGVSAFALAAPLGLLISESGPLHAAIAQLGPTFSLVAAVILATGLLIHRRITAPRLAALRTVGTTLALAGAMMMGAAVVVAWPRSELLIAVGLTNAAILILLALRGGLPILHPVAVGCLALALLVGFHAVQGNLPAESDALGRQLLEALLLGRSSLVLTGLAL 592          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91785.21254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6I6ANP9_9PLAN8.320e-15999.61Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A8W6_9PLAN1.090e-12980.78Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A2E2C1W6_9PLAN2.390e-10768.67Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A517VGG1_9PLAN1.830e-10567.47Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A350K466_9PLAN2.180e-10568.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A6C4I3_9PLAN1.600e-10467.20Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A517RI45_9PLAN1.660e-10265.49Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A0A518IEY5_9PLAN1.660e-10264.71Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517WYY3_9PLAN6.150e-9863.53Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A847GWT2_9BACT3.760e-4638.67Uncharacterized protein n=1 Tax=Candidatus Anammox... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91785contigM-pyrifera_M_contig91785:3..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score325.5
Seed ortholog evalue2.2e-86
Seed eggNOG ortholog344747.PM8797T_25501
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs2IZTX@203682,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size771
Cds size741
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.558038-UTR-M-pyrifera_M_contig91785:2..321622816830.558038-UTR-M-pyrifera_M_contig91785:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91785 3..32 +
1692278203.7360773-UTR-M-pyrifera_M_contig91785:2..321692278203.7360773-UTR-M-pyrifera_M_contig91785:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91785 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.5735188-CDS-M-pyrifera_M_contig91785:32..7731622816830.5735188-CDS-M-pyrifera_M_contig91785:32..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91785 33..773 +
1692278203.7516098-CDS-M-pyrifera_M_contig91785:32..7731692278203.7516098-CDS-M-pyrifera_M_contig91785:32..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91785 33..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91785.21254.1prot_M-pyrifera_M_contig91785.21254.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91785 33..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91785.21254.1

>prot_M-pyrifera_M_contig91785.21254.1 ID=prot_M-pyrifera_M_contig91785.21254.1|Name=mRNA_M-pyrifera_M_contig91785.21254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=247bp
MVHSSSRILLSFGRWPLLAIVLGTSAGQILISRLGDHATTFLQINFLALL
PVGCFVGGLVYVLRNTFDWEEISDSRARELVTLLGLAVFSVLAPCWLMIW
NAPERLETFARLTPLFSLMESLLVGFGLLLHHRKGKDESPHWSLTGSSLA
IFAAIMLLVNFAIAWPRVDILIALGIVNAISLTLLAFRGRFPLCHVPALA
SLTISVLLGFHVLGGTLPLEGVTQRMLMEAMLLGRSAIVLLALAIGA
back to top

mRNA from alignment at M-pyrifera_M_contig91785:3..773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91785.21254.1 ID=mRNA_M-pyrifera_M_contig91785.21254.1|Name=mRNA_M-pyrifera_M_contig91785.21254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=771bp|location=Sequence derived from alignment at M-pyrifera_M_contig91785:3..773+ (Macrocystis pyrifera P11B4 male)
CTCGGTGTCGGCTTTGCCGCGTTCGGGTGGATGGTCCATTCGTCCAGCCG CATCCTGCTCAGTTTCGGACGCTGGCCTTTACTGGCGATCGTCCTGGGTA CCTCAGCCGGGCAGATTCTGATCTCCCGCCTCGGGGATCACGCTACGACG TTTCTGCAAATCAATTTCCTCGCACTGTTACCGGTCGGCTGCTTTGTCGG TGGATTGGTGTATGTGCTGCGCAATACGTTCGACTGGGAAGAAATATCTG ATTCCCGCGCCCGCGAACTGGTTACGCTGCTCGGGCTGGCGGTCTTTTCC GTGCTGGCTCCCTGCTGGCTGATGATCTGGAATGCCCCCGAACGCCTGGA AACCTTTGCGAGACTGACGCCGCTGTTCAGCCTGATGGAAAGTCTGCTGG TCGGATTCGGTCTGCTGCTCCATCACCGGAAAGGGAAAGACGAATCGCCG CACTGGTCCCTGACGGGCTCGTCCCTCGCGATCTTTGCTGCGATCATGCT GCTGGTTAACTTCGCGATCGCCTGGCCGCGCGTCGACATTCTGATCGCCC TGGGAATCGTCAACGCCATTAGTCTGACACTGCTCGCCTTTCGCGGACGT TTTCCTTTGTGCCATGTACCGGCACTCGCATCGCTTACGATTTCAGTCCT GCTCGGATTTCACGTTCTGGGCGGTACCCTGCCTCTGGAAGGTGTCACAC AGCGGATGCTGATGGAAGCGATGCTGCTGGGCCGTTCTGCCATCGTATTA CTGGCATTGGCGATCGGTGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig91785:3..773+

>mRNA_M-pyrifera_M_contig91785.21254.1 ID=mRNA_M-pyrifera_M_contig91785.21254.1|Name=mRNA_M-pyrifera_M_contig91785.21254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1482bp|location=Sequence derived from alignment at M-pyrifera_M_contig91785:3..773+ (Macrocystis pyrifera P11B4 male)
ATGGTCCATTCGTCCAGCCGCATCCTGCTCAGTTTCGGACGCTGGCCTTT
ACTGGCGATCGTCCTGGGTACCTCAGCCGGGCAGATTCTGATCTCCCGCC
TCGGGGATCACGCTACGACGTTTCTGCAAATCAATTTCCTCGCACTGTTA
CCGGTCGGCTGCTTTGTCGGTGGATTGGTGTATGTGCTGCGCAATACGTT
CGACTGGGAAGAAATATCTGATTCCCGCGCCCGCGAACTGGTTACGCTGC
TCGGGCTGGCGGTCTTTTCCGTGCTGGCTCCCTGCTGGCTGATGATCTGG
AATGCCCCCGAACGCCTGGAAACCTTTGCGAGACTGACGCCGCTGTTCAG
CCTGATGGAAAGTCTGCTGGTCGGATTCGGTCTGCTGCTCCATCACCGGA
AAGGGAAAGACGAATCGCCGCACTGGTCCCTGACGGGCTCGTCCCTCGCG
ATCTTTGCTGCGATCATGCTGCTGGTTAACTTCGCGATCGCCTGGCCGCG
CGTCGACATTCTGATCGCCCTGGGAATCGTCAACGCCATTAGTCTGACAC
TGCTCGCCTTTCGCGGACGTTTTCCTTTGTGCCATGTACCGGCACTCGCA
TCGCTTACGATTTCAGTCCTGCTCGGATTTCACGTTCTGGGCGGTACCCT
GCCTCTGGAAGGTGTCACACAGCGGATGCTGATGGAAGCGATGCTGCTGG
GCCGTTCTGCCATCGTATTACTGGCATTGGCGATCGGTGCGATGGTCCAT
TCGTCCAGCCGCATCCTGCTCAGTTTCGGACGCTGGCCTTTACTGGCGAT
CGTCCTGGGTACCTCAGCCGGGCAGATTCTGATCTCCCGCCTCGGGGATC
ACGCTACGACGTTTCTGCAAATCAATTTCCTCGCACTGTTACCGGTCGGC
TGCTTTGTCGGTGGATTGGTGTATGTGCTGCGCAATACGTTCGACTGGGA
AGAAATATCTGATTCCCGCGCCCGCGAACTGGTTACGCTGCTCGGGCTGG
CGGTCTTTTCCGTGCTGGCTCCCTGCTGGCTGATGATCTGGAATGCCCCC
GAACGCCTGGAAACCTTTGCGAGACTGACGCCGCTGTTCAGCCTGATGGA
AAGTCTGCTGGTCGGATTCGGTCTGCTGCTCCATCACCGGAAAGGGAAAG
ACGAATCGCCGCACTGGTCCCTGACGGGCTCGTCCCTCGCGATCTTTGCT
GCGATCATGCTGCTGGTTAACTTCGCGATCGCCTGGCCGCGCGTCGACAT
TCTGATCGCCCTGGGAATCGTCAACGCCATTAGTCTGACACTGCTCGCCT
TTCGCGGACGTTTTCCTTTGTGCCATGTACCGGCACTCGCATCGCTTACG
ATTTCAGTCCTGCTCGGATTTCACGTTCTGGGCGGTACCCTGCCTCTGGA
AGGTGTCACACAGCGGATGCTGATGGAAGCGATGCTGCTGGGCCGTTCTG
CCATCGTATTACTGGCATTGGCGATCGGTGCG
back to top