mRNA_M-pyrifera_M_contig91541.21213.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91541.21213.1
Unique NamemRNA_M-pyrifera_M_contig91541.21213.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: A0A7S1CQ62_9STRA (L-2,4-diaminobutyric acid acetyltransferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ62_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.340e-23
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    4 IVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            I+R+ +DVR AGNVVEAAT TWESRRYLLR DG GFSFH TF+R G +TLIWYRNHVE
Sbjct:   58 ILRTLDDVRAAGNVVEAATKTWESRRYLLRSDGCGFSFHQTFLRAGETTLIWYRNHVE 115          
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: A0A813B307_9DINO (L-ectoine synthase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B307_9DINO)

HSP 1 Score: 93.6 bits (231), Expect = 2.390e-22
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    4 IVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            I+R+ EDV+ AG V +AATGTW+S+RYL RKDG+GFS H T ++EGTSTLIWY+NHVE
Sbjct:   32 IIRTFEDVQAAGGVKDAATGTWQSQRYLTRKDGMGFSMHRTIVKEGTSTLIWYQNHVE 89          
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: A0A5A8EGT0_CAFRO (L-ectoine synthase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGT0_CAFRO)

HSP 1 Score: 92.0 bits (227), Expect = 9.300e-22
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    4 IVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            I R+ +D+ +AG V EAAT TW SRRY LRKDG+GFSFHWT ++EGTSTLIWY+NH E
Sbjct:   34 IHRTLQDITDAGQVHEAATKTWISRRYTLRKDGMGFSFHWTTLKEGTSTLIWYKNHHE 91          
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: A0A7S4RLJ3_9DINO (L-2,4-diaminobutyric acid acetyltransferase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RLJ3_9DINO)

HSP 1 Score: 93.2 bits (230), Expect = 6.260e-21
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    4 IVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            ++RS EDVR  GNV +AATGTWESRRYLLR DG GFSFH T IR GTST I Y+NHVE
Sbjct:   39 VIRSLEDVRQMGNVKQAATGTWESRRYLLRADGFGFSFHNTIIRAGTSTRIHYKNHVE 96          
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: A0A850KEQ1_9HYPH (L-ectoine synthase n=2 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A850KEQ1_9HYPH)

HSP 1 Score: 83.6 bits (205), Expect = 4.380e-19
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LIVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            +IVR+ ED+      V+A TGTW SRR LLRKDG+GFSFH T I  GT TLIWY+NH+E
Sbjct:    1 MIVRNVEDIIGTEREVKADTGTWTSRRLLLRKDGMGFSFHETIIHAGTETLIWYKNHLE 59          
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: UPI00048E8F68 (ectoine synthase n=1 Tax=Terasakiella pusilla TaxID=64973 RepID=UPI00048E8F68)

HSP 1 Score: 82.8 bits (203), Expect = 8.350e-19
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 LIVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            +IVR  ED++     V+A TGTW SRR LLR DG+GFSFH T I  GT TLIWY+NH+E
Sbjct:    1 MIVRDIEDIKGTEREVKADTGTWTSRRMLLRSDGMGFSFHETIIHAGTETLIWYKNHLE 59          
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: A0A6U6PVV6_9DINO (L-ectoine synthase n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A6U6PVV6_9DINO)

HSP 1 Score: 83.6 bits (205), Expect = 2.660e-18
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   22 DVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            DV   GNV  AATGTWESRRY LRKDGLGFSFH T +  G+ T IWY+NHVE
Sbjct:   76 DVEAEGNVKRAATGTWESRRYALRKDGLGFSFHHTVLYAGSETYIWYKNHVE 127          
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: A0A1G5QP27_9GAMM (L-ectoine synthase n=1 Tax=Thiohalomonas denitrificans TaxID=415747 RepID=A0A1G5QP27_9GAMM)

HSP 1 Score: 80.9 bits (198), Expect = 5.150e-18
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LIVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            +IVR+ +D+R     VEA  G W SRR+LLRKDG+GFSF+ T IR GT T IWY+NH+E
Sbjct:    1 MIVRTLDDIRGTDREVEAENGNWVSRRFLLRKDGMGFSFNETIIRAGTETHIWYQNHLE 59          
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: A0A142BYL2_9BACT (L-ectoine synthase (Fragment) n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A142BYL2_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 2.270e-17
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 LIVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            +IV++ E++    N V+A TGTW SRR LL+KDG+GFSFH T I  GT TLIWY+NH+E
Sbjct:    1 MIVKTLEEIIATENDVKAETGTWVSRRMLLKKDGMGFSFHDTTIFAGTETLIWYKNHLE 59          
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Match: A0A3A4SYV0_9DELT (L-ectoine synthase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4SYV0_9DELT)

HSP 1 Score: 78.6 bits (192), Expect = 3.860e-17
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LIVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTSTLIWYRNHVE 177
            +IVR+ E++    N ++A TGTW SRR LL+ DG+GFSFH T I  GT TLIWY+NH+E
Sbjct:    1 MIVRTLEEIIGTENDIQAETGTWASRRMLLKNDGMGFSFHDTTIFAGTETLIWYKNHLE 59          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91541.21213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CQ62_9STRA4.340e-2377.59L-2,4-diaminobutyric acid acetyltransferase n=1 Ta... [more]
A0A813B307_9DINO2.390e-2268.97L-ectoine synthase n=1 Tax=Symbiodinium sp. KB8 Ta... [more]
A0A5A8EGT0_CAFRO9.300e-2268.97L-ectoine synthase n=2 Tax=Cafeteria roenbergensis... [more]
A0A7S4RLJ3_9DINO6.260e-2174.14L-2,4-diaminobutyric acid acetyltransferase n=1 Ta... [more]
A0A850KEQ1_9HYPH4.380e-1962.71L-ectoine synthase n=2 Tax=Methylocystaceae bacter... [more]
UPI00048E8F688.350e-1961.02ectoine synthase n=1 Tax=Terasakiella pusilla TaxI... [more]
A0A6U6PVV6_9DINO2.660e-1871.15L-ectoine synthase n=1 Tax=Alexandrium andersonii ... [more]
A0A1G5QP27_9GAMM5.150e-1859.32L-ectoine synthase n=1 Tax=Thiohalomonas denitrifi... [more]
A0A142BYL2_9BACT2.270e-1759.32L-ectoine synthase (Fragment) n=1 Tax=uncultured b... [more]
A0A3A4SYV0_9DELT3.860e-1757.63L-ectoine synthase n=1 Tax=Desulfobacteraceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91541contigM-pyrifera_M_contig91541:446..738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.3
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog1123355.JHYO01000010_gene3484
Preferred nameectC
KEGG rclassRC01729
KEGG koko:K06720
KEGG ReactionR06979
KEGG Pathwayko00260,ko01100,ko01120,map00260,map01100,map01120
KEGG ModuleM00033
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the circularization of gamma-N-acetyl- alpha,gamma-diaminobutyric acid (ADABA) to ectoine (1,4,5,6- tetrahydro-2-methyl-4-pyrimidine carboxylic acid), which is an excellent osmoprotectant
EggNOG OGs1RDGQ@1224,2U994@28211,COG1917@1,COG1917@2
EC4.2.1.108
COG Functional cat.S
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.4925678-CDS-M-pyrifera_M_contig91541:445..5071622816828.4925678-CDS-M-pyrifera_M_contig91541:445..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91541 446..507 -
1692278202.5779495-CDS-M-pyrifera_M_contig91541:445..5071692278202.5779495-CDS-M-pyrifera_M_contig91541:445..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91541 446..507 -
1622816828.5051217-CDS-M-pyrifera_M_contig91541:599..7381622816828.5051217-CDS-M-pyrifera_M_contig91541:599..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91541 600..738 -
1692278202.5963397-CDS-M-pyrifera_M_contig91541:599..7381692278202.5963397-CDS-M-pyrifera_M_contig91541:599..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91541 600..738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91541.21213.1prot_M-pyrifera_M_contig91541.21213.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91541 446..738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91541.21213.1

>prot_M-pyrifera_M_contig91541.21213.1 ID=prot_M-pyrifera_M_contig91541.21213.1|Name=mRNA_M-pyrifera_M_contig91541.21213.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
LIVRSAEDVRNAGNVVEAATGTWESRRYLLRKDGLGFSFHWTFIREGTST
LIWYRNHVEVRRKKRV*
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mRNA from alignment at M-pyrifera_M_contig91541:446..738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91541.21213.1 ID=mRNA_M-pyrifera_M_contig91541.21213.1|Name=mRNA_M-pyrifera_M_contig91541.21213.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=293bp|location=Sequence derived from alignment at M-pyrifera_M_contig91541:446..738- (Macrocystis pyrifera P11B4 male)
CTGATTGTGCGCAGCGCTGAGGACGTGAGGAACGCAGGAAACGTGGTCGA GGCTGCCACCGGCACTTGGGAGAGCCGCAGATACCTGCTGCGCAAGGATG GGCTCGGCTTTTCGTTCCATTGGACCTTCATTCGGGAAGGTAAGCGGGGG GTTGGGTGGTACGGATGCGCTCGTGGCGTGGCAAAAATTGCTGCCATTTT CCAATTCACACTCGCGTTTCCCCACGTGCAGGTACATCCACGCTCATTTG GTACCGCAACCATGTAGAGGTACGCAGAAAGAAGCGGGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91541:446..738-

>mRNA_M-pyrifera_M_contig91541.21213.1 ID=mRNA_M-pyrifera_M_contig91541.21213.1|Name=mRNA_M-pyrifera_M_contig91541.21213.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig91541:446..738- (Macrocystis pyrifera P11B4 male)
CTGATTGTGCGCAGCGCTGAGGACGTGAGGAACGCAGGAAACGTGGTCGA
GGCTGCCACCGGCACTTGGGAGAGCCGCAGATACCTGCTGCGCAAGGATG
GGCTCGGCTTTTCGTTCCATTGGACCTTCATTCGGGAAGCTGATTGTGCG
CAGCGCTGAGGACGTGAGGAACGCAGGAAACGTGGTCGAGGCTGCCACCG
GCACTTGGGAGAGCCGCAGATACCTGCTGCGCAAGGATGGGCTCGGCTTT
TCGTTCCATTGGACCTTCATTCGGGAAGGTACATCCACGCTCATTTGGTA
CCGCAACCATGTAGAGGTACGCAGAAAGAAGCGGGTGTGAGTACATCCAC
GCTCATTTGGTACCGCAACCATGTAGAGGTACGCAGAAAGAAGCGGGTGT
GA
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