mRNA_M-pyrifera_M_contig91371.21176.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91371.21176.1
Unique NamemRNA_M-pyrifera_M_contig91371.21176.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: A0A517PT31_9PLAN (Calx-beta domain protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PT31_9PLAN)

HSP 1 Score: 442 bits (1137), Expect = 2.980e-139
Identity = 249/259 (96.14%), Postives = 250/259 (96.53%), Query Frame = 1
Query:    1 APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDASGIIDNGTSL 777
            APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVID NGGVVAQSVTITVTGVNDAPTVSA VTSEVTEDAG FSL+LLT A DVDLSD L VS LTLVSGDASGI DNGTSL
Sbjct: 8453 APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDGNGGVVAQSVTITVTGVNDAPTVSAAVTSEVTEDAGSFSLDLLTGAADVDLSDILSVSGLTLVSGDASGITDNGTSL 8711          
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: UPI00118C4F13 (cadherin-like domain-containing protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00118C4F13)

HSP 1 Score: 409 bits (1051), Expect = 1.070e-127
Identity = 225/237 (94.94%), Postives = 232/237 (97.89%), Query Frame = 1
Query:    1 APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTL 711
            APVLSIITEND+SYSLNLLSGAADVD+TDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAA+TS VSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSL VGETEV+T+SY+V+D NGGVVAQSVTITVTGVNDAPTVSA VTSEVTEDAGGFSLNLLTNA DVDLSDTL
Sbjct: 7629 APVLSIITENDDSYSLNLLSGAADVDVTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAAVTSTVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLVVGETEVITFSYSVVDGNGGVVAQSVTITVTGVNDAPTVSAAVTSEVTEDAGGFSLNLLTNASDVDLSDTL 7865          
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: A0A517RJG7_9PLAN (tRNA3(Ser)-specific nuclease WapA n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RJG7_9PLAN)

HSP 1 Score: 342 bits (877), Expect = 2.570e-104
Identity = 186/259 (71.81%), Postives = 220/259 (84.94%), Query Frame = 1
Query:    1 APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDASGIIDNGTSL 777
            A V S +TE+D SYSL+LL+ A+DVD +D L+V+GL+LVSGDA+GI DNG +L +DPS YN+LA  ETEVITY+YN+ DGNGGVVAQT TITI G+ND PTVSAA++S V+EDDG+YSLDLLT A+DVD SD L+VSGL+LVSGDA+GI DNG SL IDPSAYN+LAVGETEV+TY+YNVID NGG+VAQ+ TIT+TGVNDAPTVSA VTS +TED G  +L+LLTNA DVDLSD L +S L LVSGDASGI  NG SL
Sbjct: 4160 AAVSSTVTEDDGSYSLDLLTSASDVDTSDILNVSGLSLVSGDATGIIDNGNSLSIDPSAYNNLAVSETEVITYSYNVTDGNGGVVAQTATITITGVNDAPTVSAAVSSTVTEDDGSYSLDLLTSASDVDTSDILNVSGLSLVSGDATGIIDNGNSLSIDPSAYNNLAVGETEVITYTYNVIDGNGGIVAQTATITITGVNDAPTVSAGVTSTLTEDDGAANLDLLTNASDVDLSDVLNISDLVLVSGDASGIAQNGNSL 4418          
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: A0A2E7KJ70_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KJ70_9PLAN)

HSP 1 Score: 328 bits (840), Expect = 2.340e-99
Identity = 180/254 (70.87%), Postives = 209/254 (82.28%), Query Frame = 1
Query:   19 ITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTS-AVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDASGIIDNGTSL 777
            +TE+D S SL+LL+ A+DVDL+D LS+  LT VSGD SGIT+NGT+LG+DPS YNSLAAGET VI Y+YN+ DGNGGVVAQT TIT+ G+ND+P V A +T+ A +EDDG++SLDLLTGA+D D SD L VS LTLVSGDASGIT+NGTSLGIDPSAY SLA GET V+TY+YNV D NGGV AQ+  IT+TGVNDAP VS +VTS VTED   FSL+LL NA D DLSD LGVS LTLVSGD SG+ DNGTSL
Sbjct:  177 VTEDDGSTSLDLLTNASDVDLSDLLSITDLTYVSGDNSGITENGTSLGIDPSAYNSLAAGETAVIVYSYNVTDGNGGVVAQTATITVTGVNDSPVVGAVVTNDATTEDDGSFSLDLLTGASDADTSDVLGVSSLTLVSGDASGITENGTSLGIDPSAYISLAAGETAVITYNYNVTDGNGGVTAQTAVITITGVNDAPIVSGIVTSNVTEDDSNFSLDLLENASDADLSDNLGVSGLTLVSGDDSGVTDNGTSL 430          
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: A0A517WUW9_9PLAN (Calx-beta domain protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WUW9_9PLAN)

HSP 1 Score: 326 bits (835), Expect = 1.120e-98
Identity = 183/257 (71.21%), Postives = 210/257 (81.71%), Query Frame = 1
Query:    7 VLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDASGIIDNGTSL 777
            V S  TE+D S+SL+LL+GA D+D TD L V GLTLVSGDASGITDNGT+LG+DP+ Y  LAAGE E+ITY YN+ DGNGG V QT+TITI G+ND PTVSA L +A +EDD ++SLDLLTGA DVD +D L V+GLTLVSGDASGITDNGTSLGIDPSAY SLA  E+EV+ Y YNVID+NGG VAQ+ TIT+TGVNDAPTV   V SE TEDA  FSL+LLT A D+D +D LGV+ LTLVSGDASGI DNGTSL
Sbjct: 3377 VNSEFTEDDVSFSLDLLTGANDLDTTDILGVNGLTLVSGDASGITDNGTSLGIDPNAYTGLAAGEIEIITYTYNVTDGNGGSVPQTVTITITGVNDVPTVSA-LNTAATEDDVSFSLDLLTGANDVDTTDILGVNGLTLVSGDASGITDNGTSLGIDPSAYQSLAANESEVIVYHYNVIDNNGGSVAQTATITITGVNDAPTVGVAVNSEFTEDAVSFSLDLLTGANDLDTTDILGVNGLTLVSGDASGITDNGTSL 3632          
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: A0A518IJC7_9PLAN (Calx-beta domain protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IJC7_9PLAN)

HSP 1 Score: 322 bits (824), Expect = 3.370e-97
Identity = 176/259 (67.95%), Postives = 212/259 (81.85%), Query Frame = 1
Query:    1 APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDASGIIDNGTSL 777
            A V S +TE+D + +L+LL+ A+DVDL+D L+++ L LVSGDASGI  NG +L + PS YN LA GETEVITY YN++DGNGG+VAQT TITI G+ND PTVSAA++S ++EDDG  +LDLLT A+DVDLSD L++S L LVSGDASGI  NG SL I P+AYNSLAVGETEV+TY+YNVID NGG+VAQ+ TIT+TGVNDAPTVSA V+S +TED G  +L+LLTNA DVDLSDTL + SL LVSGDASGI  NG SL
Sbjct: 6009 AGVSSTLTEDDGAANLDLLTNASDVDLSDVLNISDLILVSGDASGIAQNGNSLDITPSAYNGLAVGETEVITYTYNVIDGNGGIVAQTATITITGVNDAPTVSAAVSSTLTEDDGNANLDLLTNASDVDLSDVLNISDLILVSGDASGIAQNGNSLDITPNAYNSLAVGETEVITYTYNVIDGNGGIVAQTATITITGVNDAPTVSAAVSSTLTEDDGAANLDLLTNATDVDLSDTLNIESLVLVSGDASGIAQNGNSL 6267          
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: A6CFF1_9PLAN (Polyhydroxyalkanoate synthesis repressor PhaR (Fragment) n=4 Tax=Gimesia maris TaxID=122 RepID=A6CFF1_9PLAN)

HSP 1 Score: 297 bits (760), Expect = 1.330e-88
Identity = 162/259 (62.55%), Postives = 205/259 (79.15%), Query Frame = 1
Query:    1 APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDASGIIDNGTSL 777
            A + S +TE   +YSLNLLS A D D  D+L+V+GLTLVSGDA+GIT NG TL +DP  Y SLA  E+EVI+Y+YN++DGNGG VAQT TITI G+N+TPTVSA L+S+V+EDDG +SLDLL+GA+D+DLSD+L++SGL LVSGDA+G+T NG  L I+P  Y SL  GE+ V++YSY+++D NGG VAQ+ TIT+TG+ND PTVSA ++S VTED G FSL+LL  A D D + TL VS LTLVSGDA+GI  NG +L
Sbjct: 1213 AALSSTVTEEAGAYSLNLLSDAVDADTNDSLNVSGLTLVSGDAAGITVNGNTLEIDPGAYTSLAEEESEVISYSYNVIDGNGGTVAQTATITITGLNNTPTVSAELSSSVTEDDGVFSLDLLSGASDIDLSDSLNISGLVLVSGDATGVTVNGNMLDINPIIYTSLNTGESAVISYSYDIVDGNGGTVAQTATITITGMNDNPTVSAALSSTVTEDDGSFSLDLLAGASDADANATLNVSGLTLVSGDAAGITVNGNTL 1471          
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: A0A518IFY6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IFY6_9PLAN)

HSP 1 Score: 280 bits (715), Expect = 1.430e-82
Identity = 157/259 (60.62%), Postives = 192/259 (74.13%), Query Frame = 1
Query:    1 APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDASGIIDNGTSL 777
            A V + +TE+D  +SL+LL+ A+D D TD L+V+ L L  GD SG+T NG  L +DPS YN LA GE+ VITY+YN++DG GGVVAQT TITI G+ND+P VSAA+T+ V+EDD  +SLDLLT A+D D +D L+VS L L  GD SG+T NG  L IDPSAYN LA GE+ V+TYSYNVID  GGVVAQ+ TIT+TGVND+P VSA VT+ VTED   FSL+LLTNA D D +D L VS+L L  GD SG+  NG  L
Sbjct: 1188 AAVTTTVTEDDADFSLDLLTNASDPDTTDMLNVSNLMLTGGDDSGVTVNGNQLDIDPSAYNYLAFGESAVITYSYNVIDGEGGVVAQTATITITGVNDSPAVSAAVTTTVTEDDADFSLDLLTNASDPDTTDMLNVSNLMLTGGDDSGVTVNGNQLDIDPSAYNYLAFGESAVITYSYNVIDGEGGVVAQTATITITGVNDSPAVSAAVTTTVTEDDADFSLDLLTNASDPDTTDMLNVSNLMLTGGDDSGVTVNGNQL 1446          
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: A0A249NY65_9HYPH (Alkaline phosphatase n=3 Tax=Sinorhizobium sp. CCBAU 05631 TaxID=794846 RepID=A0A249NY65_9HYPH)

HSP 1 Score: 275 bits (704), Expect = 3.070e-81
Identity = 154/259 (59.46%), Postives = 191/259 (73.75%), Query Frame = 1
Query:    1 APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDASGIIDNGTSL 777
            A V    +E++  +S++LL+GA+D D +D L+V+GLTL  GDASG+T NG  L VDPSVYN LA GET VITY+Y+++D +GG VAQT TITI G ND P VSAA++ + SED+  +S+DLL GA+D D SD L+VSGLTL  GDASG+T NG  L +DPSAYN LAVGET V+TYSY+VIDS+GG VAQ+ TIT+ G ND P VSA V+   +ED  GFS++LL  A D D SD L VS LTL  GDASG+  NG  L
Sbjct:  584 AAVSGSASEDEAGFSVDLLAGASDADASDVLNVSGLTLTGGDASGVTVNGDGLSVDPSVYNYLAVGETAVITYSYDVIDSHGGSVAQTATITIEGRNDQPAVSAAVSGSASEDEAGFSVDLLAGASDADASDVLNVSGLTLTGGDASGVTVNGDGLSVDPSAYNYLAVGETAVITYSYDVIDSHGGSVAQTATITIEGRNDQPAVSAAVSGSASEDEAGFSVDLLAGASDADASDVLNVSGLTLTGGDASGVTVNGDGL 842          
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Match: Q21L73_SACD2 (VCBS domain protein n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) TaxID=203122 RepID=Q21L73_SACD2)

HSP 1 Score: 271 bits (693), Expect = 1.310e-79
Identity = 150/224 (66.96%), Postives = 184/224 (82.14%), Query Frame = 1
Query:  106 LTLVSGDASGITDNGTTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTPTVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGITDNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVNDAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDASGIIDNGTSL 777
            L L SGDASG+T +G +L +DP+ YN+LA+GE+EVITY+Y++ DGNGG VAQT TITI G ND PTVS+A+TS+ SEDD AYSLDLLT A+D D SDTL+V+ LTLVSGDASGIT +G +L IDP+AYN+LA GE+EV+TYSY+V D NGG VAQ+ TIT+TG NDAPTVS+ VTS  +ED   +SL+LLTNA D D SDTL V++LTLVSGDASG+  +G SL
Sbjct: 2992 LVLDSGDASGVTVSGNSLSIDPNAYNALASGESEVITYSYDVEDGNGGSVAQTATITITGSNDAPTVSSAVTSSASEDDAAYSLDLLTNASDADTSDTLNVNNLTLVSGDASGITVSGNALSIDPNAYNALAAGESEVITYSYDVEDGNGGSVAQTATITITGSNDAPTVSSAVTSSASEDDAAYSLDLLTNASDADSSDTLNVNNLTLVSGDASGVTVSGNSL 3215          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91371.21176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PT31_9PLAN2.980e-13996.14Calx-beta domain protein n=1 Tax=Gimesia chilikens... [more]
UPI00118C4F131.070e-12794.94cadherin-like domain-containing protein n=1 Tax=Gi... [more]
A0A517RJG7_9PLAN2.570e-10471.81tRNA3(Ser)-specific nuclease WapA n=1 Tax=Gimesia ... [more]
A0A2E7KJ70_9PLAN2.340e-9970.87Uncharacterized protein (Fragment) n=1 Tax=Gimesia... [more]
A0A517WUW9_9PLAN1.120e-9871.21Calx-beta domain protein n=1 Tax=Gimesia aquarii T... [more]
A0A518IJC7_9PLAN3.370e-9767.95Calx-beta domain protein n=1 Tax=Gimesia fumaroli ... [more]
A6CFF1_9PLAN1.330e-8862.55Polyhydroxyalkanoate synthesis repressor PhaR (Fra... [more]
A0A518IFY6_9PLAN1.430e-8260.62Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A249NY65_9HYPH3.070e-8159.46Alkaline phosphatase n=3 Tax=Sinorhizobium sp. CCB... [more]
Q21L73_SACD21.310e-7966.96VCBS domain protein n=1 Tax=Saccharophagus degrada... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91371contigM-pyrifera_M_contig91371:3..779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score303.5
Seed ortholog evalue9.3e-80
Seed eggNOG ortholog344747.PM8797T_02424
KEGG koko:K01179,ko:K01342,ko:K01406,ko:K07004,ko:K12287,ko:K14194,ko:K15125,ko:K20276
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,ko01503,ko02024,ko05133,ko05150,map00500,map01100,map01503,map02024,map05133,map05150
Hectar predicted targeting categoryother localisation
EggNOG free text desc.domain protein
EggNOG OGsCOG1404@1,COG1404@2,COG2931@1,COG2931@2,COG3209@1,COG3209@2,COG3210@1,COG3210@2,COG4932@1,COG4932@2,COG5276@1,COG5276@2
EC3.2.1.4,3.4.21.62,3.4.24.40
COG Functional cat.M
CAZyGH5,GH9
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko02044,ko03110
Exons1
Model size777
Cds size777
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.3950424-CDS-M-pyrifera_M_contig91371:2..7791622816826.3950424-CDS-M-pyrifera_M_contig91371:2..779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91371 3..779 -
1692278201.1958396-CDS-M-pyrifera_M_contig91371:2..7791692278201.1958396-CDS-M-pyrifera_M_contig91371:2..779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91371 3..779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91371.21176.1prot_M-pyrifera_M_contig91371.21176.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91371 3..779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91371.21176.1

>prot_M-pyrifera_M_contig91371.21176.1 ID=prot_M-pyrifera_M_contig91371.21176.1|Name=mRNA_M-pyrifera_M_contig91371.21176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=259bp
APVLSIITENDNSYSLNLLSGAADVDLTDTLSVAGLTLVSGDASGITDNG
TTLGVDPSVYNSLAAGETEVITYNYNIVDGNGGVVAQTLTITIIGINDTP
TVSAALTSAVSEDDGAYSLDLLTGAADVDLSDTLSVSGLTLVSGDASGIT
DNGTSLGIDPSAYNSLAVGETEVVTYSYNVIDSNGGVVAQSVTITVTGVN
DAPTVSAVVTSEVTEDAGGFSLNLLTNAYDVDLSDTLGVSSLTLVSGDAS
GIIDNGTSL
back to top

mRNA from alignment at M-pyrifera_M_contig91371:3..779-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91371.21176.1 ID=mRNA_M-pyrifera_M_contig91371.21176.1|Name=mRNA_M-pyrifera_M_contig91371.21176.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=777bp|location=Sequence derived from alignment at M-pyrifera_M_contig91371:3..779- (Macrocystis pyrifera P11B4 male)
GCTCCGGTGCTTTCGATCATTACTGAAAACGATAACAGTTACAGCCTGAA TTTACTGTCAGGGGCCGCTGATGTCGATCTGACAGACACACTGAGTGTGG CTGGTTTGACCCTGGTGAGTGGCGACGCCTCCGGGATCACCGATAACGGG ACGACCCTGGGCGTAGATCCGAGTGTCTATAACAGTCTGGCTGCCGGTGA AACAGAGGTCATTACATACAATTACAATATCGTAGATGGTAATGGCGGAG TGGTGGCTCAGACGTTGACGATTACCATTATCGGGATTAATGACACTCCC ACGGTAAGTGCTGCATTGACTTCAGCGGTTTCAGAGGACGACGGAGCCTA CAGCCTGGATCTGTTGACGGGCGCTGCTGATGTGGATCTGTCAGATACCC TGAGTGTCAGTGGTCTGACGCTGGTGAGTGGTGACGCTTCCGGGATCACC GATAACGGGACAAGTCTGGGCATTGATCCGAGTGCGTACAACAGTCTGGC GGTCGGCGAGACGGAAGTTGTTACGTACAGTTACAACGTAATTGATAGTA ACGGCGGAGTCGTGGCACAGAGTGTGACGATTACCGTGACGGGAGTGAAT GATGCTCCGACAGTGAGTGCCGTTGTGACTTCTGAAGTGACTGAAGATGC AGGCGGCTTCAGTCTGAATCTGCTGACGAACGCCTATGATGTGGATTTGT CGGATACACTGGGCGTGAGTAGTCTGACGCTAGTGAGTGGTGATGCCTCC GGGATCATCGATAACGGGACGAGCCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig91371:3..779-

>mRNA_M-pyrifera_M_contig91371.21176.1 ID=mRNA_M-pyrifera_M_contig91371.21176.1|Name=mRNA_M-pyrifera_M_contig91371.21176.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1554bp|location=Sequence derived from alignment at M-pyrifera_M_contig91371:3..779- (Macrocystis pyrifera P11B4 male)
GCTCCGGTGCTTTCGATCATTACTGAAAACGATAACAGTTACAGCCTGAA
TTTACTGTCAGGGGCCGCTGATGTCGATCTGACAGACACACTGAGTGTGG
CTGGTTTGACCCTGGTGAGTGGCGACGCCTCCGGGATCACCGATAACGGG
ACGACCCTGGGCGTAGATCCGAGTGTCTATAACAGTCTGGCTGCCGGTGA
AACAGAGGTCATTACATACAATTACAATATCGTAGATGGTAATGGCGGAG
TGGTGGCTCAGACGTTGACGATTACCATTATCGGGATTAATGACACTCCC
ACGGTAAGTGCTGCATTGACTTCAGCGGTTTCAGAGGACGACGGAGCCTA
CAGCCTGGATCTGTTGACGGGCGCTGCTGATGTGGATCTGTCAGATACCC
TGAGTGTCAGTGGTCTGACGCTGGTGAGTGGTGACGCTTCCGGGATCACC
GATAACGGGACAAGTCTGGGCATTGATCCGAGTGCGTACAACAGTCTGGC
GGTCGGCGAGACGGAAGTTGTTACGTACAGTTACAACGTAATTGATAGTA
ACGGCGGAGTCGTGGCACAGAGTGTGACGATTACCGTGACGGGAGTGAAT
GATGCTCCGACAGTGAGTGCCGTTGTGACTTCTGAAGTGACTGAAGATGC
AGGCGGCTTCAGTCTGAATCTGCTGACGAACGCCTATGATGTGGATTTGT
CGGATACACTGGGCGTGAGTAGTCTGACGCTAGTGAGTGGTGATGCCTCC
GGGATCATCGATAACGGGACGAGCCTGGCTCCGGTGCTTTCGATCATTAC
TGAAAACGATAACAGTTACAGCCTGAATTTACTGTCAGGGGCCGCTGATG
TCGATCTGACAGACACACTGAGTGTGGCTGGTTTGACCCTGGTGAGTGGC
GACGCCTCCGGGATCACCGATAACGGGACGACCCTGGGCGTAGATCCGAG
TGTCTATAACAGTCTGGCTGCCGGTGAAACAGAGGTCATTACATACAATT
ACAATATCGTAGATGGTAATGGCGGAGTGGTGGCTCAGACGTTGACGATT
ACCATTATCGGGATTAATGACACTCCCACGGTAAGTGCTGCATTGACTTC
AGCGGTTTCAGAGGACGACGGAGCCTACAGCCTGGATCTGTTGACGGGCG
CTGCTGATGTGGATCTGTCAGATACCCTGAGTGTCAGTGGTCTGACGCTG
GTGAGTGGTGACGCTTCCGGGATCACCGATAACGGGACAAGTCTGGGCAT
TGATCCGAGTGCGTACAACAGTCTGGCGGTCGGCGAGACGGAAGTTGTTA
CGTACAGTTACAACGTAATTGATAGTAACGGCGGAGTCGTGGCACAGAGT
GTGACGATTACCGTGACGGGAGTGAATGATGCTCCGACAGTGAGTGCCGT
TGTGACTTCTGAAGTGACTGAAGATGCAGGCGGCTTCAGTCTGAATCTGC
TGACGAACGCCTATGATGTGGATTTGTCGGATACACTGGGCGTGAGTAGT
CTGACGCTAGTGAGTGGTGATGCCTCCGGGATCATCGATAACGGGACGAG
CCTG
back to top