mRNA_M-pyrifera_M_contig91359.21172.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91359.21172.1
Unique NamemRNA_M-pyrifera_M_contig91359.21172.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91359.21172.1 vs. uniprot
Match: A0A2E7KMI2_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KMI2_9PLAN)

HSP 1 Score: 328 bits (842), Expect = 1.590e-110
Identity = 161/172 (93.60%), Postives = 165/172 (95.93%), Query Frame = 1 
Query:    1 WTYTDTEHDEVTRWILTVDVQKDFSPTKFLCESTRLKNVKDDSSWIPEWENTTTWKKESEVWVPVHVERKLFMGPYSGTNEVFTVDLEWQSVNEPLSDDVFTYADFDVPDNIAIQDTSSGEAVWIKPLPANLPQPERGLSSNSTTMAILIGLNLLVLLLIGIWYLRKRMLHA 516
            WTYTDTEHDEVTRWILTVDVQKDFSPTKFLCESTRL++VKDDSSWIPEWENTTTWKKESEVWVPVHVERKLFMG YSGTNEVFTVDLEWQSVNEP++ DVFTYADFDVPDNIAIQDTSSGEAVWIKPLPANLPQ ER LSSNST   ILIGLNLLVLLLIGIWYLRKRMLHA
Sbjct:  212 WTYTDTEHDEVTRWILTVDVQKDFSPTKFLCESTRLQDVKDDSSWIPEWENTTTWKKESEVWVPVHVERKLFMGSYSGTNEVFTVDLEWQSVNEPVAVDVFTYADFDVPDNIAIQDTSSGEAVWIKPLPANLPQSERRLSSNSTAKTILIGLNLLVLLLIGIWYLRKRMLHA 383
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BLAST of mRNA_M-pyrifera_M_contig91359.21172.1 vs. uniprot
Match: A0A355G833_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355G833_9PLAN)

HSP 1 Score: 298 bits (763), Expect = 1.610e-98
Identity = 148/173 (85.55%), Postives = 158/173 (91.33%), Query Frame = 1 
Query:    1 WTYTDTEHDEVTRWILTVDVQKDFSPTKFLCESTRLKNVKDDSSWIPEWENTTTWKKESEVWVPVHVERKLFMGPYSGTNEVFTVDLEWQSVNEPLSDDVFTYADFDVPDNIAIQDTSSGEAVWIKPLPANLPQPERGLSSN-STTMAILIGLNLLVLLLIGIWYLRKRMLHA 516
            WTYTD EHDE TR ILTVDVQ+DFSPTKFLCESTRL+NVKDDSSWIPEWENTTTWK+ SEVWVPVHVERKLFMGPYSGT+EVFTVDLEW+SVNEP++DDVFTYADFDVPDNIAIQDTSSGE VWIKPLPAN  Q ER LSSN STT  ILI +NLL LLLIG+WYLRKR+ HA
Sbjct:  213 WTYTDLEHDEATRCILTVDVQQDFSPTKFLCESTRLQNVKDDSSWIPEWENTTTWKEVSEVWVPVHVERKLFMGPYSGTDEVFTVDLEWKSVNEPIADDVFTYADFDVPDNIAIQDTSSGETVWIKPLPANKRQTERPLSSNYSTTKTILILVNLLCLLLIGVWYLRKRVSHA 385
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BLAST of mRNA_M-pyrifera_M_contig91359.21172.1 vs. uniprot
Match: A0A518I8Q0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I8Q0_9PLAN)

HSP 1 Score: 296 bits (757), Expect = 1.310e-97
Identity = 140/173 (80.92%), Postives = 161/173 (93.06%), Query Frame = 1 
Query:    1 WTYTDTEHDEVTRWILTVDVQKDFSPTKFLCESTRLKNVKDDSSWIPEWENTTTWKKESEVWVPVHVERKLFMGPYSGTNEVFTVDLEWQSVNEPLSDDVFTYADFDVPDNIAIQDTSSGEAVWIKPLPA-NLPQPERGLSSNSTTMAILIGLNLLVLLLIGIWYLRKRMLHA 516
            WTYT+TE+DEVTRWIL+VD+Q+ FSPTKFLCESTRL+NVKDDSSWIPEWENTTTWK+ S+VWVPVHVERK FMGPYSGTNEVFT DL+WQSVN+P++DDVFTYADFDVPD+IAIQDTSSGEAVWIKPLP  N+P PE  +SSNS+T  ILIGLNLL++LLIG+W+LRKRM H+
Sbjct:  213 WTYTNTEYDEVTRWILSVDIQQGFSPTKFLCESTRLQNVKDDSSWIPEWENTTTWKEVSDVWVPVHVERKRFMGPYSGTNEVFTADLKWQSVNKPIADDVFTYADFDVPDHIAIQDTSSGEAVWIKPLPPPNIPPPEPQVSSNSSTKTILIGLNLLIVLLIGVWFLRKRMSHS 385
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BLAST of mRNA_M-pyrifera_M_contig91359.21172.1 vs. uniprot
Match: A0A518A404_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A404_9PLAN)

HSP 1 Score: 254 bits (650), Expect = 1.900e-81
Identity = 120/169 (71.01%), Postives = 142/169 (84.02%), Query Frame = 1 
Query:    1 WTYTDTEHDEVTRWILTVDVQKDFSPTKFLCESTRLKNVKDDSSWIPEWENTTTWKKESEVWVPVHVERKLFMGPYSGTNEVFTVDLEWQSVNEPLSDDVFTYADFDVPDNIAIQDTSSGEAVWIKPLPANLPQPERGLSSNSTTMAILIGLNLLVLLLIGIWYLRKRM 507
            W YTDTEH+E+TRWIL VDVQKDF PTKFLCESTRL+  K  S WI EWENTTTWK+ S+VWVPVHVERKLFMGPYSG N+VF+ DL+WQSVN+P+   VFTYA F+VPD+IAIQDTS+GEAVWIKP+PA  PQPE   S  +    IL+GLNLL++LL+G+W+LRKR+
Sbjct:  212 WVYTDTEHNELTRWILWVDVQKDFIPTKFLCESTRLQEGKQTSGWISEWENTTTWKEVSDVWVPVHVERKLFMGPYSGANQVFSADLKWQSVNKPIPAKVFTYAGFEVPDHIAIQDTSTGEAVWIKPMPAIQPQPEPPHSQKTIPKPILMGLNLLIMLLLGVWFLRKRL 380
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91359.21172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7KMI2_9PLAN1.590e-11093.60Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A355G833_9PLAN1.610e-9885.55Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A518I8Q0_9PLAN1.310e-9780.92Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A518A404_9PLAN1.900e-8171.01Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91359contigM-pyrifera_M_contig91359:3..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size519
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.2574706-CDS-M-pyrifera_M_contig91359:2..5211622816826.2574706-CDS-M-pyrifera_M_contig91359:2..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91359 3..521 +
1692278201.1449015-CDS-M-pyrifera_M_contig91359:2..5211692278201.1449015-CDS-M-pyrifera_M_contig91359:2..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91359 3..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91359.21172.1prot_M-pyrifera_M_contig91359.21172.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91359 3..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91359.21172.1

>prot_M-pyrifera_M_contig91359.21172.1 ID=prot_M-pyrifera_M_contig91359.21172.1|Name=mRNA_M-pyrifera_M_contig91359.21172.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
WTYTDTEHDEVTRWILTVDVQKDFSPTKFLCESTRLKNVKDDSSWIPEWE
NTTTWKKESEVWVPVHVERKLFMGPYSGTNEVFTVDLEWQSVNEPLSDDV
FTYADFDVPDNIAIQDTSSGEAVWIKPLPANLPQPERGLSSNSTTMAILI
GLNLLVLLLIGIWYLRKRMLHA*
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mRNA from alignment at M-pyrifera_M_contig91359:3..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91359.21172.1 ID=mRNA_M-pyrifera_M_contig91359.21172.1|Name=mRNA_M-pyrifera_M_contig91359.21172.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig91359:3..521+ (Macrocystis pyrifera P11B4 male)
TGGACCTACACGGACACAGAACACGACGAAGTCACGCGATGGATTCTAAC
GGTTGATGTTCAAAAAGATTTCAGTCCCACGAAATTTCTTTGCGAATCAA
CCAGGCTGAAGAATGTGAAAGATGATTCCAGTTGGATTCCAGAGTGGGAA
AATACCACAACCTGGAAAAAAGAGTCGGAGGTGTGGGTTCCCGTCCATGT
GGAGCGGAAACTTTTCATGGGACCCTATTCAGGTACGAACGAAGTCTTCA
CTGTTGATCTGGAATGGCAGTCCGTCAACGAGCCCCTTTCCGATGACGTG
TTTACCTACGCAGACTTCGATGTCCCTGACAACATCGCCATCCAGGACAC
TTCATCAGGAGAGGCTGTCTGGATCAAGCCCCTTCCTGCAAATCTACCGC
AGCCTGAGCGTGGACTCAGCAGTAACTCAACAACAATGGCAATTCTGATT
GGATTGAATCTATTGGTCTTACTGCTGATTGGGATATGGTATCTTCGTAA
AAGAATGTTGCACGCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91359:3..521+

>mRNA_M-pyrifera_M_contig91359.21172.1 ID=mRNA_M-pyrifera_M_contig91359.21172.1|Name=mRNA_M-pyrifera_M_contig91359.21172.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig91359:3..521+ (Macrocystis pyrifera P11B4 male)
TGGACCTACACGGACACAGAACACGACGAAGTCACGCGATGGATTCTAAC
GGTTGATGTTCAAAAAGATTTCAGTCCCACGAAATTTCTTTGCGAATCAA
CCAGGCTGAAGAATGTGAAAGATGATTCCAGTTGGATTCCAGAGTGGGAA
AATACCACAACCTGGAAAAAAGAGTCGGAGGTGTGGGTTCCCGTCCATGT
GGAGCGGAAACTTTTCATGGGACCCTATTCAGGTACGAACGAAGTCTTCA
CTGTTGATCTGGAATGGCAGTCCGTCAACGAGCCCCTTTCCGATGACGTG
TTTACCTACGCAGACTTCGATGTCCCTGACAACATCGCCATCCAGGACAC
TTCATCAGGAGAGGCTGTCTGGATCAAGCCCCTTCCTGCAAATCTACCGC
AGCCTGAGCGTGGACTCAGCAGTAACTCAACAACAATGGCAATTCTGATT
GGATTGAATCTATTGGTCTTACTGCTGATTGGGATATGGTATCTTCGTAA
AAGAATGTTGCACGCTTGATGGACCTACACGGACACAGAACACGACGAAG
TCACGCGATGGATTCTAACGGTTGATGTTCAAAAAGATTTCAGTCCCACG
AAATTTCTTTGCGAATCAACCAGGCTGAAGAATGTGAAAGATGATTCCAG
TTGGATTCCAGAGTGGGAAAATACCACAACCTGGAAAAAAGAGTCGGAGG
TGTGGGTTCCCGTCCATGTGGAGCGGAAACTTTTCATGGGACCCTATTCA
GGTACGAACGAAGTCTTCACTGTTGATCTGGAATGGCAGTCCGTCAACGA
GCCCCTTTCCGATGACGTGTTTACCTACGCAGACTTCGATGTCCCTGACA
ACATCGCCATCCAGGACACTTCATCAGGAGAGGCTGTCTGGATCAAGCCC
CTTCCTGCAAATCTACCGCAGCCTGAGCGTGGACTCAGCAGTAACTCAAC
AACAATGGCAATTCTGATTGGATTGAATCTATTGGTCTTACTGCTGATTG
GGATATGGTATCTTCGTAAAAGAATGTTGCACGCTTGA
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