mRNA_M-pyrifera_M_contig91342.21168.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91342.21168.1
Unique NamemRNA_M-pyrifera_M_contig91342.21168.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: L8GL16_ACACA (P protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GL16_ACACA)

HSP 1 Score: 107 bits (266), Expect = 5.090e-25
Identity = 52/77 (67.53%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPGA 231
            DNVTTILL+TPVT+RLCRVLD+ P PI+L+EV+ SNIGGTAT IGD PNI+I++N+ I+ +G VDF +F LH+ PGA
Sbjct:  414 DNVTTILLVTPVTLRLCRVLDLDPLPIILSEVIFSNIGGTATGIGDPPNILIISNSQIKDTGLVDFSSFTLHVAPGA 490
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: L8GMI1_ACACA (P protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GMI1_ACACA)

HSP 1 Score: 103 bits (258), Expect = 6.090e-24
Identity = 49/77 (63.64%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPGA 231
            DNVTTILL+ PVT+RLC+V+++ P P++LAEV+ SNIGGTAT IGD PNI+I++NA ++AS +VDF TF +H+ PGA
Sbjct:  411 DNVTTILLVAPVTLRLCKVINLDPLPVILAEVIFSNIGGTATGIGDPPNILIISNAKMRASKKVDFATFTVHVAPGA 487
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: UPI0018D775B3 (P protein-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D775B3)

HSP 1 Score: 101 bits (251), Expect = 5.370e-23
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPGASFLWLLRRDSQWL 270
            DNVTT+LLLTPVT+RLC VL++ P+ IL+AEVM SNIGGTAT IGD PN+IIV+N  IQ +G +DF  F LHM  G  F  L      WL
Sbjct:  386 DNVTTVLLLTPVTIRLCEVLELDPKYILIAEVMFSNIGGTATAIGDPPNVIIVSNKGIQEAG-IDFAEFTLHMFIGIIFCMLAGFLLLWL 474
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: UPI001458103F (P protein-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458103F)

HSP 1 Score: 100 bits (250), Expect = 7.320e-23
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPGASFL 240
            DNVTTILLLTPVT+RLC VL++ P+ IL+AEV+ SNIGGTAT +GD PN+IIV+N ++ A G +DF  F LHMT G  F+
Sbjct:  374 DNVTTILLLTPVTIRLCEVLNLDPKNILIAEVLFSNIGGTATAVGDPPNVIIVSNKEMSAKG-IDFAEFTLHMTVGIVFV 452
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: UPI001454EB89 (P protein-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001454EB89)

HSP 1 Score: 100 bits (248), Expect = 1.370e-22
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPGASF 237
            DNVTTILLLTPVT+RLC VL+I P+ +L+AEVM SNIGGTAT IGD PN+IIV+N  IQ +G +DF  F LHM  G  F
Sbjct:  389 DNVTTILLLTPVTIRLCEVLEIDPKYVLIAEVMFSNIGGTATAIGDPPNVIIVSNKGIQKAG-IDFAEFTLHMMIGILF 466
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: A0A8B7ZTT8_ACAPL (P protein-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZTT8_ACAPL)

HSP 1 Score: 99.4 bits (246), Expect = 2.540e-22
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPGASFLWLLRRDSQWL 270
            DNVTT+LLLTPVT+RLC VL++ P+ +L+AEVM SNIGGTAT IGD PN+IIV+N  I+ +G +DF  F LHM  G  F  L      WL
Sbjct:  387 DNVTTVLLLTPVTIRLCEVLELDPKYVLIAEVMFSNIGGTATAIGDPPNVIIVSNKGIKEAG-IDFAEFTLHMFIGIIFCMLAGFLLLWL 475
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: A0A210R205_MIZYE (P protein n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R205_MIZYE)

HSP 1 Score: 99.0 bits (245), Expect = 3.270e-22
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPGASFL 240
            DNVTTILLLTPVT+RLC VL++ P+ IL+AEV+ SNIGGTAT +GD PN+IIV+N +I   G +DF  F +HMT G  F+
Sbjct:  376 DNVTTILLLTPVTIRLCEVLNLDPKNILIAEVLFSNIGGTATAVGDPPNVIIVSNKEIAEKG-IDFAEFTIHMTVGIVFV 454
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: A0A6J8BXT9_MYTCO (P protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BXT9_MYTCO)

HSP 1 Score: 98.6 bits (244), Expect = 4.630e-22
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPG 228
            DNVTTILLLTPVT+RLC VL++ P+ IL+AEV+ SNIGGTAT IGD PN+IIV+  D +   + DF  F LHM PG
Sbjct:  256 DNVTTILLLTPVTIRLCEVLNLDPKKILIAEVLFSNIGGTATGIGDPPNVIIVSTPDFKPYKDTDFSMFTLHMFPG 331
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: UPI000995D75D (P protein-like isoform X1 n=2 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI000995D75D)

HSP 1 Score: 98.6 bits (244), Expect = 4.760e-22
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPG 228
            DNVTT+LLLTPVT+RLC V+++ P PIL A V+ SNIGG  TPIGD PN+II +N+D++ S E+DF TF LHM+ G
Sbjct:  464 DNVTTVLLLTPVTIRLCEVMELNPVPILTAMVVYSNIGGAMTPIGDPPNVIIASNSDVR-SAEIDFGTFTLHMSIG 538
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BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Match: A0A0L7QML9_9HYME (P protein n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7QML9_9HYME)

HSP 1 Score: 94.7 bits (234), Expect = 8.620e-22
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNIIIVNNADIQASGEVDFFTFVLHMTPG 228
            DNVTT+LL+TPVT+RLC V++I P PIL A V+ SNIGG  TPIGD PN+II +N D+  +G +DF TF LHM+ G
Sbjct:   85 DNVTTVLLMTPVTIRLCEVMEINPVPILTAMVVYSNIGGAMTPIGDPPNVIIASNRDVINNG-IDFSTFTLHMSIG 159
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91342.21168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GL16_ACACA5.090e-2567.53P protein, putative n=1 Tax=Acanthamoeba castellan... [more]
L8GMI1_ACACA6.090e-2463.64P protein, putative n=1 Tax=Acanthamoeba castellan... [more]
UPI0018D775B35.370e-2361.11P protein-like n=1 Tax=Patiria miniata TaxID=46514... [more]
UPI001458103F7.320e-2363.75P protein-like n=1 Tax=Pecten maximus TaxID=6579 R... [more]
UPI001454EB891.370e-2267.09P protein-like n=1 Tax=Asterias rubens TaxID=7604 ... [more]
A0A8B7ZTT8_ACAPL2.540e-2258.89P protein-like n=1 Tax=Acanthaster planci TaxID=13... [more]
A0A210R205_MIZYE3.270e-2262.50P protein n=2 Tax=Mizuhopecten yessoensis TaxID=65... [more]
A0A6J8BXT9_MYTCO4.630e-2264.47P protein n=1 Tax=Mytilus coruscus TaxID=42192 Rep... [more]
UPI000995D75D4.760e-2263.16P protein-like isoform X1 n=2 Tax=Pseudomyrmex gra... [more]
A0A0L7QML9_9HYME8.620e-2261.84P protein n=1 Tax=Habropoda laboriosa TaxID=597456... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91342contigM-pyrifera_M_contig91342:275..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score98.6
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog7668.SPU_028807-tr
Preferred nameOCA2
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000323,GO:0003006,GO:0003333,GO:0003674,GO:0005215,GO:0005302,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006582,GO:0006725,GO:0006726,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0008283,GO:0008324,GO:0008509,GO:0008514,GO:0009058,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0015075,GO:0015171,GO:0015173,GO:0015179,GO:0015238,GO:0015318,GO:0015711,GO:0015801,GO:0015807,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0018958,GO:0019438,GO:0019748,GO:0019953,GO:0022412,GO:0022414,GO:0022857,GO:0030154,GO:0030318,GO:0030659,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0033162,GO:0034220,GO:0042175,GO:0042221,GO:0042438,GO:0042440,GO:0042441,GO:0042470,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0044237,GO:0044249,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045009,GO:0046148,GO:0046189,GO:0046942,GO:0046943,GO:0048066,GO:0048069,GO:0048232,GO:0048468,GO:0048515,GO:0048609,GO:0048770,GO:0048856,GO:0048869,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051704,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0090741,GO:0097708,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098827,GO:0098852,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902475,GO:1903825,GO:1905039
EggNOG free text desc.It is involved in the biological process described with transmembrane transport
EggNOG OGs38FH6@33154,3B9J7@33208,3CUUX@33213,COG1055@1,KOG2639@2759
COG Functional cat.P
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.0913382-CDS-M-pyrifera_M_contig91342:274..5471622816826.0913382-CDS-M-pyrifera_M_contig91342:274..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91342 275..547 +
1692278201.0473437-CDS-M-pyrifera_M_contig91342:274..5471692278201.0473437-CDS-M-pyrifera_M_contig91342:274..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91342 275..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91342.21168.1prot_M-pyrifera_M_contig91342.21168.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91342 275..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91342.21168.1

>prot_M-pyrifera_M_contig91342.21168.1 ID=prot_M-pyrifera_M_contig91342.21168.1|Name=mRNA_M-pyrifera_M_contig91342.21168.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
DNVTTILLLTPVTVRLCRVLDIRPEPILLAEVMLSNIGGTATPIGDQPNI
IIVNNADIQASGEVDFFTFVLHMTPGASFLWLLRRDSQWL*
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mRNA from alignment at M-pyrifera_M_contig91342:275..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91342.21168.1 ID=mRNA_M-pyrifera_M_contig91342.21168.1|Name=mRNA_M-pyrifera_M_contig91342.21168.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig91342:275..547+ (Macrocystis pyrifera P11B4 male)
GACAATGTGACGACGATTCTCCTGCTCACGCCTGTGACGGTGCGCCTGTG
TCGTGTGCTGGACATCCGGCCCGAGCCCATTCTCCTTGCAGAGGTGATGC
TCAGCAACATTGGAGGCACCGCAACGCCGATCGGAGACCAGCCCAACATC
ATCATCGTCAACAACGCAGACATCCAGGCCAGCGGCGAAGTGGACTTCTT
CACCTTTGTCCTGCACATGACCCCTGGTGCGTCCTTCCTCTGGCTACTGC
GAAGAGACAGCCAGTGGCTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91342:275..547+

>mRNA_M-pyrifera_M_contig91342.21168.1 ID=mRNA_M-pyrifera_M_contig91342.21168.1|Name=mRNA_M-pyrifera_M_contig91342.21168.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig91342:275..547+ (Macrocystis pyrifera P11B4 male)
GACAATGTGACGACGATTCTCCTGCTCACGCCTGTGACGGTGCGCCTGTG
TCGTGTGCTGGACATCCGGCCCGAGCCCATTCTCCTTGCAGAGGTGATGC
TCAGCAACATTGGAGGCACCGCAACGCCGATCGGAGACCAGCCCAACATC
ATCATCGTCAACAACGCAGACATCCAGGCCAGCGGCGAAGTGGACTTCTT
CACCTTTGTCCTGCACATGACCCCTGGTGCGTCCTTCCTCTGGCTACTGC
GAAGAGACAGCCAGTGGCTTTGAGACAATGTGACGACGATTCTCCTGCTC
ACGCCTGTGACGGTGCGCCTGTGTCGTGTGCTGGACATCCGGCCCGAGCC
CATTCTCCTTGCAGAGGTGATGCTCAGCAACATTGGAGGCACCGCAACGC
CGATCGGAGACCAGCCCAACATCATCATCGTCAACAACGCAGACATCCAG
GCCAGCGGCGAAGTGGACTTCTTCACCTTTGTCCTGCACATGACCCCTGG
TGCGTCCTTCCTCTGGCTACTGCGAAGAGACAGCCAGTGGCTTTGA
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