mRNA_M-pyrifera_M_contig9133.21165.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9133.21165.1
Unique NamemRNA_M-pyrifera_M_contig9133.21165.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9133.21165.1 vs. uniprot
Match: A0A6H5JIX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX0_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.290e-26
Identity = 67/88 (76.14%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:   28 LQGRLAQVVAERGETATAAKRMQEENARLEKQLVDARRKLSELTTQLSETIGLAEARAKDEGRLRSELKRLQITAARRERDASSARAG 291
            LQGRLAQ+  ER E+A  AKR  EENARLEKQLVDARRKLSELT QLSETIG AE RA+DEGRLRSELKRLQITA RR+R+  S   G
Sbjct:  713 LQGRLAQLATERDESAAVAKRGSEENARLEKQLVDARRKLSELTIQLSETIGQAETRARDEGRLRSELKRLQITAQRRDREVYSGTRG 800
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9133.21165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIX0_9PHAE2.290e-2676.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9133contigM-pyrifera_M_contig9133:9198..10908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size298
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9133.21165.1prot_M-pyrifera_M_contig9133.21165.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9133 9198..10908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816825.8907044-CDS-M-pyrifera_M_contig9133:9197..92371622816825.8907044-CDS-M-pyrifera_M_contig9133:9197..9237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9133 9198..9237 -
1692278200.9379785-CDS-M-pyrifera_M_contig9133:9197..92371692278200.9379785-CDS-M-pyrifera_M_contig9133:9197..9237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9133 9198..9237 -
1622816825.9069629-CDS-M-pyrifera_M_contig9133:9765..98781622816825.9069629-CDS-M-pyrifera_M_contig9133:9765..9878Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9133 9766..9878 -
1692278200.9489133-CDS-M-pyrifera_M_contig9133:9765..98781692278200.9489133-CDS-M-pyrifera_M_contig9133:9765..9878Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9133 9766..9878 -
1622816825.923908-CDS-M-pyrifera_M_contig9133:10764..109081622816825.923908-CDS-M-pyrifera_M_contig9133:10764..10908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9133 10765..10908 -
1692278200.9593172-CDS-M-pyrifera_M_contig9133:10764..109081692278200.9593172-CDS-M-pyrifera_M_contig9133:10764..10908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9133 10765..10908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9133.21165.1

>prot_M-pyrifera_M_contig9133.21165.1 ID=prot_M-pyrifera_M_contig9133.21165.1|Name=mRNA_M-pyrifera_M_contig9133.21165.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MLAAPDGGCLQGRLAQVVAERGETATAAKRMQEENARLEKQLVDARRKLS
ELTTQLSETIGLAEARAKDEGRLRSELKRLQITAARRERDASSARAGGA
back to top

mRNA from alignment at M-pyrifera_M_contig9133:9198..10908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9133.21165.1 ID=mRNA_M-pyrifera_M_contig9133.21165.1|Name=mRNA_M-pyrifera_M_contig9133.21165.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1711bp|location=Sequence derived from alignment at M-pyrifera_M_contig9133:9198..10908- (Macrocystis pyrifera P11B4 male)
ATGCTCGCTGCTCCTGACGGTGGGTGCCTTCAGGGACGTCTGGCCCAAGT
CGTAGCGGAGCGAGGCGAAACTGCGACGGCTGCGAAACGCATGCAGGAAG
AGAACGCCAGGCTTGAGAAGCAGCTGGTGGACGCCCGGCGCAAGGCGAGT
ACCTCGTGGCAAGCGCTTGACTCTCCTTGTCAACAAGCGTCCTTGACCTT
CGGCCACGGTTAGCTGCATGCAGCGTTGGCAATTGTTTCGTTCGTATATG
GTCGAACGACGAGGCTAGCCCCCCCCCTCGGTATAGCAATAGCAGGCAGG
AGGAGGAAGTGGATGCGCAGATGTCCCTGTGGCAAAGTAATAGAGAATAG
AAGTCACATTGTGGGAGAATGTGCACAAAGAGGAACGGAATGTTTTAGAG
AAGATAAGGAAAATAGACGAATATGACATGGAGGAGTTAGGTACAGTAAA
TAGTAGCGAGAAATGATCATTATTCTAGGAGATAGATGGAGGCCAGAGGC
GACGAAACAGGATGGAGATGAGATTACGTAGCAAAACGTTTCTATGTGGT
ATATGGAAACAACGTATTGAGCGCCGAACCTTCGGAGGTGTCTCTATTAG
GAGTAGGAACGGTGCTCCGTCTCGAAAGGGACGCGTGGTCAGTGATCAAA
TGACTAAGGCAAGCAACAAATGAGTACCCCCCCCCCCCCCGACGTCTGTC
TAGCTGGGAGTTCATCCTGGCAATTTCGGTACTTGGTGCAATGGTTACAC
GACTGCTCACGTTTGAGTGGTGCGCTTCTTGTCGTAGGGCTGAAGTGAAG
TTTGGACGTGCCGTGTTGACCCCAATCCCAACGCCTAATTGCCACGCCCA
TAACGAACGTCGCGTTTAGTGTGGACCCACAGCAGTATTTAGTACAATTG
TAATTTGTCTGGGATTAACGATCGTTTCGCCTACCCCTCCTCCCCTCTCC
CCCCTGGTGTCCACTCTAATGCCCAATCGATACGTGGGCGACACGTCGAT
ACATCGGTGCGCGTTGGGTTTACACATCAGCTTTCTGAGCTGACAACTCA
GCTGTCGGAGACAATTGGGTTGGCCGAGGCAAGGGCGAAGGATGAGGGCC
GCCTCAGATCGGAGCTCAAGCGCTTGCAGATTACCGCTGCCAGGTGGGTG
GTGATGGTTTTTGCTTCTTTTGTTACTCATGCTGTTGATGTCATCGCTCC
GGCAAGTTTCTTACAATATCTACACTGGTGGGAAACTCTACTGATTGAGT
TCCGAAGCAGGCAGCAGTAGTAGTGTCTTAACGGCGCGTCCTTGAAGCGA
GGATCTGGTGTGGCGCGAGCCAGCCAAGGACAAGACGGGGTGACGGCGAT
GTACCCCGGAAGCAAAATGTTGCTTAAATCGTTTTGAGAGCTGCAGTCTC
GTTTTTGGGACAAACACTCAAATTAAAAGTAGTTTGTCCCCAAACGGGAC
TGTAGTCCTAAATAGATCAACATGCTCCGCGAGGGCAAGACGAAGGCAAG
CAACCGCATTTTCTCGAGGGCCCATTCCTGCTTGTTTTGCGTGACGGTGG
ACGCCGTGCTCTCGCTCGTCAGACAAAATACACGAAGGCTTACGCTGCCA
GCGCGTCTGCCTCGCGTGTTTTCCCCCCCCGCTTCGTCCTCTGCCTTGAT
CGCCCCCACCTCGTGTCCCAGACGAGAAAGAGACGCCTCATCGGCAAGAG
CGGGAGGGGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9133:9198..10908-

>mRNA_M-pyrifera_M_contig9133.21165.1 ID=mRNA_M-pyrifera_M_contig9133.21165.1|Name=mRNA_M-pyrifera_M_contig9133.21165.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig9133:9198..10908- (Macrocystis pyrifera P11B4 male)
ATGCTCGCTGCTCCTGACGGTGGGTGCCTTCAGGGACGTCTGGCCCAAGT
CGTAGCGGAGCGAGGCGAAACTGCGACGGCTGCGAAACGCATGCAGGAAG
AGAACGCCAGGCTTGAGAAGCAGCTGGTGGACGCCCGGCGCAAGATGCTC
GCTGCTCCTGACGGTGGGTGCCTTCAGGGACGTCTGGCCCAAGTCGTAGC
GGAGCGAGGCGAAACTGCGACGGCTGCGAAACGCATGCAGGAAGAGAACG
CCAGGCTTGAGAAGCAGCTGGTGGACGCCCGGCGCAAGCTTTCTGAGCTG
ACAACTCAGCTGTCGGAGACAATTGGGTTGGCCGAGGCAAGGGCGAAGGA
TGAGGGCCGCCTCAGATCGGAGCTCAAGCGCTTGCAGATTACCGCTGCCA
GCTTTCTGAGCTGACAACTCAGCTGTCGGAGACAATTGGGTTGGCCGAGG
CAAGGGCGAAGGATGAGGGCCGCCTCAGATCGGAGCTCAAGCGCTTGCAG
ATTACCGCTGCCAGACGAGAAAGAGACGCCTCATCGGCAAGAGCGGGAGG
GGCGACGAGAAAGAGACGCCTCATCGGCAAGAGCGGGAGGGGCG
back to top