mRNA_M-pyrifera_M_contig9130.21164.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9130.21164.1
Unique NamemRNA_M-pyrifera_M_contig9130.21164.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: A0A6H5KVC1_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVC1_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 2.330e-62
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 1
Query:    1 MMAYLRGRGAPLKRVMLLLDARHGFKKLDMEFLEKLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVMVRQQLDEVSRRQTNLPTMTLSALKGRGLVELQRELAALDPKPTAA 357
            MMAYLRGRGAPLKRVMLLLDARHGFKK D+EFL  LYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVV VRQQL+EVSRRQTNL  MTLSALKG G+VELQ+ELA+LDPKP AA
Sbjct:  221 MMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSRRQTNLSVMTLSALKGAGMVELQKELASLDPKPVAA 339          
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: A0A835ZG72_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG72_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.670e-30
Identity = 66/119 (55.46%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    1 MMAYLRGRGAPLKRVMLLLDARHGFKKLDMEFLEKLYDPKGP-----SPLGKYRPPKIQILLTKCDLVKRIDLARRVVMVRQQLDEVSRRQTNLPTMTLSALKGRGLVELQRELAALDP 342
            ++ YLRGRGA LKRV +LLDARHGFK  D+ FL++LY  KG      +PLG Y+PPK+Q++LTKCDLV+R +LARRV  VR +L +V+ R+T LP + +SAL+ + + +LQ+ELA L P
Sbjct:  243 LLQYLRGRGALLKRVCMLLDARHGFKANDVAFLQRLYARKGQDGLGRNPLGPYKPPKLQVILTKCDLVQRRELARRVSQVRARLSDVTPRETYLPVLMVSALRDQAVEDLQKELAGLVP 361          
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: A0A7S2GV24_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV24_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.650e-26
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 MMAYLRGRGAPLKRVMLLLDARHGFKKLDMEFLEKLYDPKG--PSPLGKY---RPPKIQILLTKCDLVKRIDLARRVVMVRQQL-DEVSRRQTNLPTMTLSALKGRGLVELQRELAAL 336
            M+ YLR RG  LKRV LLLDARHG K +D +FL  LY+P+     P G++    PPK+Q++LTKCDLV R DL RR+  VR+++ DE+  R   L  + +SA +G+G++ELQRELA+L
Sbjct:  117 MLKYLRHRGPSLKRVCLLLDARHGLKVIDRQFLRLLYEPRPIVDPPPGEHVLWDPPKLQVILTKCDLVDRFDLVRRIQRVREEMSDELPSRAGRLQAIMVSAREGKGIMELQRELASL 234          
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: A0A7S2RWQ0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RWQ0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.200e-22
Identity = 67/128 (52.34%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   10 YLRGRGAP-LKRVMLLLDARHGFKKLDMEFLEKL-YDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVMVRQQLDEVSRRQ-TNLPTMTLSALKGRG------------LVELQRELAALDPKP 348
            Y+ GRG   LKRV+ LLDARHGFKK D EFLE L +D K  + L     P IQ++LTKCDLV + DLARRVV V+QQL  +  RQ ++LP M +SA  G G            ++ELQRELA L  KP
Sbjct:    4 YILGRGKKSLKRVLFLLDARHGFKKTDFEFLESLQHDLKARTNL-----PPIQLVLTKCDLVTQNDLARRVVQVKQQLSNILIRQPSSLPVMLVSAKAGLGFNNIRGNRARGGILELQRELAGLVRKP 126          
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: A0A7S1VXG1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXG1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.050e-20
Identity = 65/130 (50.00%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   10 YLRGRGAPLKRVMLLLDARHGFKKLDMEFLEKLYDP------KGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVMVRQQL-DEVSRRQTNLPTMTLSALKGRG------------LVELQRELAALDP 342
            YL  RG  LKRV+LL+DARHG K  D EFL  L +       +G +P      P IQI+LTKCDLV + DLARRVV VRQQL D + R  ++LP M +SA  G G            ++ELQRELAAL P
Sbjct:  390 YLLDRGKSLKRVLLLIDARHGMKNADFEFLSSLQESLKSTSKEGATPKNVRELPPIQIVLTKCDLVTQDDLARRVVQVRQQLSDNLLREPSSLPVMLVSAKAGLGYNNIRGGIARGGVLELQRELAALVP 519          
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: K0SSQ4_THAOC (EngB-type G domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SSQ4_THAOC)

HSP 1 Score: 90.1 bits (222), Expect = 1.920e-18
Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   34 LKRVMLLLDARHGFKKLDMEFLEKLYD-------PKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVMVRQQL-DEVSRRQTNLPTMTLSALKGRG------------LVELQRELAALDPKP 348
            LKR++LLLDARHGFKK D EFL  L D         G + + +  PP +QI+LTKCDLVK+ DLARRVV V++ L D + R  ++LP M +SA  G G            ++ELQRELA+L P P
Sbjct:  336 LKRILLLLDARHGFKKTDFEFLTSLQDGLGTRIQESGGNKIRRELPP-LQIVLTKCDLVKQADLARRVVAVKRDLSDFLLREPSSLPVMLVSAKPGLGFNNVRGGKPLGGVLELQRELASLVPMP 459          
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: A0A7S1ZZ98_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ98_TRICV)

HSP 1 Score: 89.7 bits (221), Expect = 2.830e-18
Identity = 64/138 (46.38%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   10 YLRGRGAPLKRVMLLLDARHGFKKLDMEFLEKLYDP------KGPSPLGK------YRPPKIQILLTKCDLVKRIDLARRVVMVRQQLDEVSRRQ-TNLPTMTLSALKG------------RGLVELQRELAALDPKP 348
            YL  RG  LKR++LL+DARHGFK  D  FLE L +       KG     K      +  P IQI+LTKCDL K+ DLARRVV V++QL +  +RQ ++LP M +SA  G             G+++LQRELAAL P P
Sbjct:  358 YLLRRGESLKRILLLIDARHGFKNADYAFLETLQNALKEGQKKGAHVSSKQQCGLEFDLPPIQIVLTKCDLCKQDDLARRVVQVKEQLSKSLKRQPSSLPVMLVSAKTGVGYNNIRRGKARGGMLQLQRELAALVPFP 495          
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: A0A7S2YB71_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YB71_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.800e-18
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 MMAYLRGRG------APLKRVMLLLDARHGFKKLDMEFLEKLYDPKGPSPLGKYRP-------------PKIQILLTKCDLVKRIDLARRVVMVRQQL-DEVSRRQTNLPTMTLSA--LKGRGLVELQRELAAL 336
            M  YL G G      AP KR++LL+DARHG KK D EFLE + D    +   K                P IQI+LTKCDLV +IDLARRVV VRQQL D ++R  + LP M +S    K +G++ELQ+EL++L
Sbjct:   85 MRQYLTGGGTMAHGTAP-KRILLLIDARHGMKKADFEFLETIEDALRDTEREKNEKQQSNNQRKKRLDLPPIQIVLTKCDLVPQIDLARRVVQVRQQLSDALTREPSQLPVMFVSVNPTKLKGVLELQKELSSL 217          
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: A0A7S2KMU0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KMU0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.930e-17
Identity = 62/136 (45.59%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   34 LKRVMLLLDARHGFKKLDMEFLEKLYD----PKGPSPLGKYRP--------------PKIQILLTKCDLVKRIDLARRVVMVRQQL-DEVSRRQTNLPTMTLSALKGRG--------------LVELQRELAALDP 342
            LKR++LLLDARHGFK  D EFLE L +      G S                     P IQI+LTKCDLVK++DLARRVV+VRQQL D ++R  ++LP M +SA  G G              ++ELQ+ELA+L P
Sbjct:  230 LKRILLLLDARHGFKLADFEFLEALQEGLKQQNGISSXXXXXXXXXXXXXXXXXXELPPIQIVLTKCDLVKQVDLARRVVVVRQQLSDALAREPSSLPVMLVSARAGLGFNNIRGAEQLPMGGVLELQKELASLVP 365          
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Match: A0A1E7FSI8_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSI8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.170e-16
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   34 LKRVMLLLDARHGFKKLDMEFLEKLYD---PKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVMVRQQLDEVSRRQTN-LPTMTLSA-LKGR-GLVELQRELAAL 336
            LKRV+LL+DARHG K+ D+  +  L +   PK P+ L     P +QI+LTKCDLV + DLARRV+ VRQQL +   RQ   LP M +SA ++G+ G++ELQ+ELA+L
Sbjct:  156 LKRVLLLIDARHGMKQADVNIMVSLQNALSPKVPTEL-----PPLQIVLTKCDLVSQSDLARRVIQVRQQLSDCLIRQPKILPEMLVSAQMEGQLGVLELQKELASL 257          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9130.21164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVC1_9PHAE2.330e-6289.08EngB-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A835ZG72_9STRA1.670e-3055.46P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2GV24_9STRA7.650e-2651.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RWQ0_9STRA2.200e-2252.34Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1VXG1_9STRA1.050e-2050.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0SSQ4_THAOC1.920e-1848.80EngB-type G domain-containing protein n=1 Tax=Thal... [more]
A0A7S1ZZ98_TRICV2.830e-1846.38Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7S2YB71_9STRA4.800e-1847.01Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2KMU0_9STRA3.930e-1745.59Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1E7FSI8_9STRA1.170e-1651.40p-loop containing nucleoside triphosphate hydrolas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9130contigM-pyrifera_M_contig9130:7757..11291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue3.6e-51
Seed eggNOG ortholog2880.D7FRN1
KEGG koko:K03978
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP binding
EggNOG OGsCOG0218@1,KOG2486@2759
Ec32 ortholog descriptionYihA1, YihA/EngB-like GTPase
Ec32 orthologEc-12_002430.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size408
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9130.21164.1prot_M-pyrifera_M_contig9130.21164.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9130 7757..11291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816825.802315-CDS-M-pyrifera_M_contig9130:7756..79211622816825.802315-CDS-M-pyrifera_M_contig9130:7756..7921Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 7757..7921 -
1692278200.890573-CDS-M-pyrifera_M_contig9130:7756..79211692278200.890573-CDS-M-pyrifera_M_contig9130:7756..7921Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 7757..7921 -
1622816825.815599-CDS-M-pyrifera_M_contig9130:9731..98381622816825.815599-CDS-M-pyrifera_M_contig9130:9731..9838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 9732..9838 -
1692278200.9038224-CDS-M-pyrifera_M_contig9130:9731..98381692278200.9038224-CDS-M-pyrifera_M_contig9130:9731..9838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 9732..9838 -
1622816825.8279839-CDS-M-pyrifera_M_contig9130:10553..106501622816825.8279839-CDS-M-pyrifera_M_contig9130:10553..10650Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 10554..10650 -
1692278200.9142418-CDS-M-pyrifera_M_contig9130:10553..106501692278200.9142418-CDS-M-pyrifera_M_contig9130:10553..10650Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 10554..10650 -
1622816825.8488824-CDS-M-pyrifera_M_contig9130:11252..112911622816825.8488824-CDS-M-pyrifera_M_contig9130:11252..11291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 11253..11291 -
1692278200.9274542-CDS-M-pyrifera_M_contig9130:11252..112911692278200.9274542-CDS-M-pyrifera_M_contig9130:11252..11291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 11253..11291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9130.21164.1

>prot_M-pyrifera_M_contig9130.21164.1 ID=prot_M-pyrifera_M_contig9130.21164.1|Name=mRNA_M-pyrifera_M_contig9130.21164.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MMAYLRGRGAPLKRVMLLLDARHGFKKLDMEFLEKLYDPKGPSPLGKYRP
PKIQILLTKCDLVKRIDLARRVVMVRQQLDEVSRRQTNLPTMTLSALKGR
GLVELQRELAALDPKPTAAKSDAESSPVDSNDSRN*
back to top

mRNA from alignment at M-pyrifera_M_contig9130:7757..11291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9130.21164.1 ID=mRNA_M-pyrifera_M_contig9130.21164.1|Name=mRNA_M-pyrifera_M_contig9130.21164.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3535bp|location=Sequence derived from alignment at M-pyrifera_M_contig9130:7757..11291- (Macrocystis pyrifera P11B4 male)
ATGATGGCCTATCTGAGGGGGCGAGGGGCGCCTCTGAAGGTTAGTTGTTA TTCCCGTCGGAAAATGAATGGTATTCCGATGATGCACCATGGGGGGGGGG GTGTGGGTGTACTCGATAGGAGAGATGTACTCGACCTGATGCATGGCCGT AGTTGTATGGCTATAGACCCTCGCATCCCTATAATGCCGGGACGGAGCAT GTCGGGTTTTCACCGACCAGGCAGACATTGCTTGCACCAGAGCGCGAAGC GCCGTAAGGTGTCCGGCGAGTCGCATGAAGGGTGAGCTGCATCCTACTAT TAATAGGAACCGTTTGTGAGGCGGACTTGCATATGGATGACAGCTTCGAT GAGTTAATTTAAATTCCGGTGTACCCAATCCCGGGGGGGGGGGGTATGTA TGTCCATGATCTCGAGCGATGCTCTTTTAGAAATGCAGCAGTTCATCATG AGGTTCAACACTGGTACCTCTTTTGCGAAAACGTTGATGCTGTTGATAGT TTGATGAGGCTGACATATAGTACGGGCTGTGCTCCGAATTGATGTCTTGG TGCGATACATTTGTTTCTTACTGCCAAGCCTCGGCCCACTGGCTTGACCG TGTTGCCCCCCCGCTCTTTTGTATCGTTTGGATTGTTTTAGCGAGTAATG TTGCTCCTAGACGCGAGGCACGGGTTCAAGAAGCTGGACATGGAGTTTCT GGAGAAATTATACGACCCTAAGGGGCCATCACCGCTCGGTGAGAAGTTCT GGCCTCATGTGTACGTACCTACTGTAGTAGTATTATATTAAAGCGATGCT ACAGGAGTAGGGTTTGGGAGCACCGCATAACTTTCGGTTCATTCCGTTGT TCGGGTGTGGTCTCCATAGATGATGGCGCACCACAATTCAGAAGCTTTTC ACACTGTCCGCCGGGCCGTTGATTTCGCTTGCCGGTACCAATCCGCCGGA GGATGAGAAGAAAAAAAGAAAAGCCAGTCGAATGTTGCAAGCGATGAAGC CGGCTGGGTAGGTTTCGCACGTTGGACTGATCATCGGCTCCACTTTACAC CTCTCTATTCCCAATCTTGTACATACCAGTATGGTTTAGCTCATGCTGCC GGGTGAGACCCGTATAATCCGCATAGTCTAGCGCGTGCTCCCTGGGTTGG ATCTGTACTCTTACGGGGGACCATAGTAAATAGGACCTACGGTGCACACA AAAACTTATACTTTTCCCAATTTTACGTACAAAATTTGGTCCTATTTACT ATGGTCCCCCGTAAAATTAATATGCAGATGTTGCACAACCCCTCACGACG GCAGGTGAGAAACTGCAGTATATTTTTTCACGGCACCGTTGTCTTTTAGG TCGACTACACCCATACGTTAGGCCGTGACGAGTAATGCCGGTACCTGCTA CCCTGTCGCTGACGAAGATCTGTTGTGTGTGTTGTATGTGCGTCTGCTGG CAGGCAAGTACCGTCCGCCAAAGATTCAGATCTTGCTGACCAAGTGCGAC CTGGTGAAGCGCATCGACCTGGCGCGAAGGGTGGTAATGGTGCGGCAGCA GCTAGATGAGGTGCGGCAAGCTTGCTTCTTTTTGTTTGTACTCCTCTGCC GGAATGGGCAAACAGGATCAGACATGTGCAGTGTGCTGCTTCGTTGCTCT AGTATGGCGTTACATTGCCCCGTCTGCGGTGGTCAAGAGCTCTTAAGCCT TAAGACGTCCTATTAATAGTGCATAGTAGTTGTCGGTGTGGTTTCGTTAG CTTTTCGTGTGCGGGGTGTGCGTCTCCCACTCGGCTTCATTGACCCTGAA AAACGAATGACACGCGAACTTGTGAATCATACTCTGGACTTGTCGCTTAA CAAAAACACGAACTAGCCCCCAAGAAGTGGACAAGCTGGTCCCAGCTGGT AGCAGGTATACGCGGAACGTTGTGCGCCATTCGCCCGCGGAAAAAAGCAC CATCAGACAAGTGACGTTATAACTTTCAGTGAGAGCAGCTCGCCGAAACG TAACCTTTGATTTGCTCACTTTACGTCTCGGCGGCTGATGTCTTGCGTGG TGCTTCCTTGATTCCTCCAGAATTACACCCACGTTTTTAGGAATATACCG TAAAGAGTAAATGGCGTGGAGTTCGCCCAGGGTTGGGTTTGATCCTTTTT CAACGCTCGATTTTTCCAGAACGGGAAGGTTGCCAATATAATCATACCGA ACAATGCTAAGGTGTTTTCGGGCAATATCTGGTGGAGAGCCTTCCGAAAA ATCTAGTGTTCTCCACCTTAGCACCCTTAGCGTTCTCGACAAAACGATCG CTCAAAAACGATCGCACCCCTGCGCGGACTCAACGGTCTTATTGTCTAGA CGGTACTAAAGGTACGATAAGTTTTGCGCTTTTGACAGGGTTGATGAAAA ATCCACGTTTGCTAGCAGTTGCCATCATAAGTACTGCAGGTCTACAACCT ATAACATGCTATCATGAACGCAGCGAGAAAAATGTTGCCAGACCTTCCCC TTCCCGAGGAACGGACGCTCTTTGCAACGACGTATATTTTAGAGCAACAT CTTATATATTAATAGTATGTCGCTGTCTGTTGTCCTCCTCTCGTCCACTC GACACGTTAACAAACGAACATCTTGAATGTTTTCACATCTCGGATCGATC ATATTTCAACAGATCATATCACGACATGTCATATCATGACAGATCAAAAA GCATGAAAGAACATATATAATGATCTAGATATGCTAAAGTAGATCCTAAG TTGCCGTTATTGTATGATATGTCGTGCAGGATTTGAACAGTACAGATTCG ACGCGAGTCGACGAGGGAAAAAAGGGCTGCAGTCTTCTCGCGGTAAAAAT GCAAGGCACGAACCGTTGTGCTGTATTACGGAGGACCATAGTAAATAGGA CCTACGGTATACACAAAAACCTATACATTTCCATACTTTTTCTAACGATG TTTGGTCGTGTTTACTATGGTCCTTCGTAGTAGTGGTGAGGGGGAATAAG AGCCTTCCGTGTGGCCCCGGATCTGAGTTTCTTACTACTAGGAGGAGAGA GAAAAGAAGGGCGAGCATGATAAATCGGACGGAAAAAAAGGAAAAAAAAG ATCCAATCCAGGAAACATGCCCTAGATCATGCAGTTTATACGGCTCCCAC GCGGCAACATGAGCTAGATCCTACAGATCAAGAAGAGATCTGTCTGCCCT GAAAGATCTAGACCATCAACTGGGGGAATCGATTATCTGTCTGAGGTGTG AATACCTTGACTGTCCTTGGCCCTCTCGTCCGCAGCTTTTGACCCCCCCC GCCCCGTTCATCCGCTCCCACTGCATGTATTGTACCGTATTTGTACGCGT ATCTGTTGCTGGTGCCTTAGGTGTCGCGGCGGCAGACCAACCTTCCCACG ATGACGCTGAGCGCATTAAAAGGAAGAGGCCTTGTGGAGCTGCAGAGAGA GCTTGCCGCTCTCGACCCCAAGCCCACCGCTGCCAAAAGCGATGCAGAGA GTAGCCCCGTTGACAGTAATGATAGCAGAAATTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9130:7757..11291-

>mRNA_M-pyrifera_M_contig9130.21164.1 ID=mRNA_M-pyrifera_M_contig9130.21164.1|Name=mRNA_M-pyrifera_M_contig9130.21164.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig9130:7757..11291- (Macrocystis pyrifera P11B4 male)
ATGATGGCCTATCTGAGGGGGCGAGGGGCGCCTCTGAAGATGATGGCCTA
TCTGAGGGGGCGAGGGGCGCCTCTGAAGCGAGTAATGTTGCTCCTAGACG
CGAGGCACGGGTTCAAGAAGCTGGACATGGAGTTTCTGGAGAAATTATAC
GACCCTAAGGGGCCATCACCGCTCGCGAGTAATGTTGCTCCTAGACGCGA
GGCACGGGTTCAAGAAGCTGGACATGGAGTTTCTGGAGAAATTATACGAC
CCTAAGGGGCCATCACCGCTCGGCAAGTACCGTCCGCCAAAGATTCAGAT
CTTGCTGACCAAGTGCGACCTGGTGAAGCGCATCGACCTGGCGCGAAGGG
TGGTAATGGTGCGGCAGCAGCTAGATGAGGCAAGTACCGTCCGCCAAAGA
TTCAGATCTTGCTGACCAAGTGCGACCTGGTGAAGCGCATCGACCTGGCG
CGAAGGGTGGTAATGGTGCGGCAGCAGCTAGATGAGGTGTCGCGGCGGCA
GACCAACCTTCCCACGATGACGCTGAGCGCATTAAAAGGAAGAGGCCTTG
TGGAGCTGCAGAGAGAGCTTGCCGCTCTCGACCCCAAGCCCACCGCTGCC
AAAAGCGATGCAGAGAGTAGCCCCGTTGACAGTAATGATAGCAGAAATTG
AGTGTCGCGGCGGCAGACCAACCTTCCCACGATGACGCTGAGCGCATTAA
AAGGAAGAGGCCTTGTGGAGCTGCAGAGAGAGCTTGCCGCTCTCGACCCC
AAGCCCACCGCTGCCAAAAGCGATGCAGAGAGTAGCCCCGTTGACAGTAA
TGATAGCAGAAATTGA
back to top