mRNA_M-pyrifera_M_contig9130.21163.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9130.21163.1
Unique NamemRNA_M-pyrifera_M_contig9130.21163.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: D7FRN0_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN0_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 6.050e-34
Identity = 54/65 (83.08%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPPAA 206
            SILNEGQGWRPSITIKQMLHGIF+LLDNPNP DPAQ+EA++L+V ++AEYDRRVL+EA+KNPPAA
Sbjct:   97 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 161
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: A0A835YNI1_9STRA (Ubiquitin conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.180e-25
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPP 200
            SILNE  GWRP+ITIKQML GI DLLDNPNP  PAQ+EA++++V +RAEY+RRV LEARKN P
Sbjct:   96 SILNEDDGWRPAITIKQMLLGIQDLLDNPNPNSPAQSEAYQMFVNNRAEYNRRVRLEARKNIP 158
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: A0A7S2Y0C7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0C7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.310e-24
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPP 200
            SILNE + WRP+ITIKQML GI DLLDNPNP  PAQ++A++LY+ DRAEY+RRV +EARKN P
Sbjct:  105 SILNEEEDWRPAITIKQMLLGIQDLLDNPNPNSPAQSDAYQLYITDRAEYNRRVRMEARKNIP 167
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: A0A7S4HWQ1_9STRA (Hypothetical protein n=3 Tax=Eupodiscales TaxID=33838 RepID=A0A7S4HWQ1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.100e-23
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPPAA 206
            SILNE +GWRP+ITIKQML GI DLLD+PNP  PAQ+EA+ LY+ +R+EY RRV  EARKN PA+
Sbjct:  135 SILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYNLYMNNRSEYKRRVKAEARKNTPAS 199
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: A0A7S2UAH5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAH5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.360e-23
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPP 200
            SILNE +GWRP+ITIKQ+L GI DLLD+PNP  PAQ+EAF LY+ ++AEY RRV  EARKN P
Sbjct:   97 SILNEEEGWRPAITIKQVLMGIQDLLDDPNPNSPAQSEAFNLYMSNKAEYRRRVKAEARKNTP 159
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: A0A484L203_9ASTE (UBC core domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484L203_9ASTE)

HSP 1 Score: 96.3 bits (238), Expect = 3.360e-23
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPP 200
            SILNE  GWRP+IT+KQ+L GI DLLD PNP DPAQ + ++L++QDR EYDRRV  +A+++PP
Sbjct:   96 SILNEDSGWRPAITVKQILIGIQDLLDQPNPADPAQTDGYQLFIQDRTEYDRRVKQQAKQHPP 158
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: A0A1Y1HXG4_KLENI (Sumo conjugation enzyme 1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXG4_KLENI)

HSP 1 Score: 95.9 bits (237), Expect = 4.510e-23
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPPA 203
            SILNE  GW+PSIT+KQ+L GI +LLD PNP DPAQ +A++L+VQDR EYDRRV  +A K PPA
Sbjct:   95 SILNEDTGWKPSITVKQILTGIQELLDAPNPSDPAQTDAYQLFVQDRKEYDRRVRQQALKYPPA 158
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: B8BY49_THAPS (Ubiquitin conjugating enzyme n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BY49_THAPS)

HSP 1 Score: 95.5 bits (236), Expect = 6.730e-23
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPPA 203
            SILNE +GWRP+IT+KQML GI DLLD PNP  PAQ+EA+ L++ ++AEY RRV  EARKN P+
Sbjct:   97 SILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTPS 160
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: A0A7S1FY89_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY89_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.080e-22
Identity = 41/65 (63.08%), Postives = 55/65 (84.62%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPPAA 206
            SILNE +GWRP+IT+KQM+ GI DLLD+PNP  PAQ+EA+ LY++++AEY RRV +EA++N P A
Sbjct:  102 SILNEEEGWRPAITLKQMVLGIQDLLDDPNPNSPAQSEAYNLYMRNKAEYSRRVRVEAKRNAPPA 166
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BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Match: A0A6U3QUR4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QUR4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.380e-22
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 3 
Query:   12 SILNEGQGWRPSITIKQMLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPPA 203
            SILNE + WRP+ITIKQML GI DLLDNPNP  PAQ++A++L+V D  EY +RV  EARKN PA
Sbjct:   97 SILNEEEDWRPAITIKQMLVGIQDLLDNPNPNSPAQSDAYQLFVSDEREYQKRVRQEARKNTPA 160
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9130.21163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRN0_ECTSI6.050e-3483.08UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YNI1_9STRA5.180e-2573.02Ubiquitin conjugating enzyme n=1 Tax=Tribonema min... [more]
A0A7S2Y0C7_9STRA1.310e-2471.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4HWQ1_9STRA1.100e-2369.23Hypothetical protein n=3 Tax=Eupodiscales TaxID=33... [more]
A0A7S2UAH5_9STRA3.360e-2369.84Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A484L203_9ASTE3.360e-2363.49UBC core domain-containing protein n=3 Tax=Cuscuta... [more]
A0A1Y1HXG4_KLENI4.510e-2367.19Sumo conjugation enzyme 1 n=1 Tax=Klebsormidium ni... [more]
B8BY49_THAPS6.730e-2365.63Ubiquitin conjugating enzyme n=2 Tax=Thalassiosira... [more]
A0A7S1FY89_9STRA1.080e-2263.08Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6U3QUR4_9STRA1.380e-2267.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9130contigM-pyrifera_M_contig9130:4589..5492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.6e-15
Seed eggNOG ortholog2880.D7FRN0
Preferred namehus5
KEGG koko:K10577
KEGG Pathwayko03013,ko04064,ko04120,ko05206,map03013,map04064,map04120,map05206
KEGG ModuleM00427
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000122,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000819,GO:0001101,GO:0002178,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005720,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006066,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006684,GO:0006686,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008610,GO:0008641,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010154,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0016604,GO:0016605,GO:0016740,GO:0016874,GO:0016877,GO:0016925,GO:0017059,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019751,GO:0019787,GO:0019789,GO:0019899,GO:0019904,GO:0019941,GO:0019948,GO:0022402,GO:0022414,GO:0030148,GO:0030163,GO:0031211,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033233,GO:0033235,GO:0033993,GO:0034311,GO:0034312,GO:0034641,GO:0035339,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044388,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045892,GO:0045934,GO:0046165,GO:0046173,GO:0046467,GO:0046511,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0048285,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051231,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0060255,GO:0061458,GO:0061650,GO:0061656,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071535,GO:0071704,GO:0071840,GO:0080090,GO:0090407,GO:0097164,GO:0097305,GO:0098796,GO:0098813,GO:0098827,GO:0099086,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1902494,GO:1902679,GO:1902850,GO:1903047,GO:1903182,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903755,GO:1904502,GO:1904504,GO:1905961,GO:1990234,GO:1990356,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0424@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04121
Exons2
Model size299
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9130.21163.1prot_M-pyrifera_M_contig9130.21163.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9130 4651..5402 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816825.7371714-UTR-M-pyrifera_M_contig9130:4588..46501622816825.7371714-UTR-M-pyrifera_M_contig9130:4588..4650Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9130 4589..4650 +
1692278200.8358436-UTR-M-pyrifera_M_contig9130:4588..46501692278200.8358436-UTR-M-pyrifera_M_contig9130:4588..4650Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9130 4589..4650 +
1622816825.7709842-UTR-M-pyrifera_M_contig9130:5402..54921622816825.7709842-UTR-M-pyrifera_M_contig9130:5402..5492Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9130 5403..5492 +
1692278200.8729062-UTR-M-pyrifera_M_contig9130:5402..54921692278200.8729062-UTR-M-pyrifera_M_contig9130:5402..5492Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9130 5403..5492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816825.749791-CDS-M-pyrifera_M_contig9130:4650..47301622816825.749791-CDS-M-pyrifera_M_contig9130:4650..4730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 4651..4730 +
1692278200.8501475-CDS-M-pyrifera_M_contig9130:4650..47301692278200.8501475-CDS-M-pyrifera_M_contig9130:4650..4730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 4651..4730 +
1622816825.760626-CDS-M-pyrifera_M_contig9130:5335..54021622816825.760626-CDS-M-pyrifera_M_contig9130:5335..5402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 5336..5402 +
1692278200.8614552-CDS-M-pyrifera_M_contig9130:5335..54021692278200.8614552-CDS-M-pyrifera_M_contig9130:5335..5402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9130 5336..5402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9130.21163.1

>prot_M-pyrifera_M_contig9130.21163.1 ID=prot_M-pyrifera_M_contig9130.21163.1|Name=mRNA_M-pyrifera_M_contig9130.21163.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MLHGIFDLLDNPNPGDPAQAEAFELYVQDRAEYDRRVLLEARKNPPAA*
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mRNA from alignment at M-pyrifera_M_contig9130:4589..5492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9130.21163.1 ID=mRNA_M-pyrifera_M_contig9130.21163.1|Name=mRNA_M-pyrifera_M_contig9130.21163.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=904bp|location=Sequence derived from alignment at M-pyrifera_M_contig9130:4589..5492+ (Macrocystis pyrifera P11B4 male)
CGTGGTGGTACAGCATCCTGAACGAGGGCCAAGGGTGGAGGCCCAGCATC
ACCATCAAGCAAATGCTGCACGGCATCTTCGATCTCTTGGACAACCCCAA
CCCAGGCGATCCTGCCCAAGCAGAGGCCTTCGAGCTTTACGTGTGAGCGT
TCTGAGTGTTACCGTCTATGTAGAACTTCCTGTGGTAGGCCTGGTTTATA
TCATGCCTTTTTTCGTTTGCGGTTGTACTTCTATGAGGGTTTAGAGTGTC
TTTTGTTCTCGGGGTATCTACTGTAGTGCCTGGTGTGCTGTTGTTCATTC
CTACAGGATTGCCATCGGTGTCACCAGCATGATGCGATATCATATACTGT
AATATCATCCTGTACATGGCGTAGCAAGCCTTTGCCGTACCCTTGAGGGC
TACTACTGTATGTCTACGTCCGTCGTTTGCGTGGTTCATATACGGAATGA
CAAGGACGGGTTGATAAAAGCTGCTTGTCGCCGACATACAAGTGTAATCT
GGTGCTCGTGTTGTGTTTTTGGATTTTATACGATACAGTCCATTCTTAGA
GTAGATTTGCATTTCGCTTGCTGTGCCGAGGTAATCGTCTGCCAAAAAAT
GCAGGGTTGGATTGAAGGGCAGGCCATTCTTGCGAATGTACGTGTGAAAG
CAATACCTTTTTCTCCTTCTTGTGTACGCACGATAGCTGCGCTAAACATG
ACTCCAATAATATTACTGCTGCTGTTGCTGTGTCACATGTACTACAGGCA
AGACCGGGCGGAATACGACAGGAGAGTGCTGCTTGAGGCCAGGAAAAACC
CTCCCGCCGCATAGCACAAGACAGGTTTCGCCGCATGACACCGGACAGCT
ATGGCGTGCTGTGGCCCGCGCGGTCATCCTTACATGCGCTGCCAGAAACG
CGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9130:4589..5492+

>mRNA_M-pyrifera_M_contig9130.21163.1 ID=mRNA_M-pyrifera_M_contig9130.21163.1|Name=mRNA_M-pyrifera_M_contig9130.21163.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig9130:4589..5492+ (Macrocystis pyrifera P11B4 male)
ATGCTGCACGGCATCTTCGATCTCTTGGACAACCCCAACCCAGGCGATCC
TGCCCAAGCAGAGGCCTTCGAGCTTTACGTATGCTGCACGGCATCTTCGA
TCTCTTGGACAACCCCAACCCAGGCGATCCTGCCCAAGCAGAGGCCTTCG
AGCTTTACGTGCAAGACCGGGCGGAATACGACAGGAGAGTGCTGCTTGAG
GCCAGGAAAAACCCTCCCGCCGCATAGGCAAGACCGGGCGGAATACGACA
GGAGAGTGCTGCTTGAGGCCAGGAAAAACCCTCCCGCCGCATAG
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