mRNA_M-pyrifera_M_contig91295.21160.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A2D9CLI0_9BACT (tRNA pseudouridine synthase A n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D9CLI0_9BACT) HSP 1 Score: 120 bits (301), Expect = 1.240e-31 Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1 Query: 1 RTVFSCSV-NAHPTEQGRVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRYEE 246 RT++SC V N P V IR+SGSGFLYNMVRI+AG LMEVGRGKIDP+TIP+IIAS DR +AG TLPPQGLRLEWIRY+E Sbjct: 196 RTIYSCVVENPKPDT---VVIRVSGSGFLYNMVRIIAGTLMEVGRGKIDPETIPEIIASGDRKRAGTTLPPQGLRLEWIRYDE 275
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A7C5WJG6_9BACT (tRNA pseudouridine synthase A n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5WJG6_9BACT) HSP 1 Score: 119 bits (297), Expect = 7.970e-31 Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 1 Query: 1 RTVFSCSVNA--------HPTEQGRVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRYEE 246 RT+F+C V A +P E R+ IR+SGSGFLYNMVRI+AG L+E GRG+IDP IP+I+AS DRT+AGPTLPPQGLRLEWIRYE+ Sbjct: 211 RTIFACDVEAGGGGAARANPDET-RLVIRVSGSGFLYNMVRIIAGTLLEAGRGRIDPAHIPEILASKDRTRAGPTLPPQGLRLEWIRYED 299
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A3M2BES3_9BACT (tRNA pseudouridine synthase A n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BES3_9BACT) HSP 1 Score: 115 bits (288), Expect = 1.560e-29 Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 1 Query: 1 RTVFSCSVNAHPTEQG---RVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRYE 243 RTV+ C V P + G R+ IR+SG GFLYNMVRI+AG LMEVGRG+++P I +IIAS DR +AGPTLPP+GLRLEW++YE Sbjct: 205 RTVYRCDVECEPCDDGHNQRLVIRVSGDGFLYNMVRIIAGTLMEVGRGRMEPTAIGEIIASLDRRRAGPTLPPEGLRLEWVKYE 288
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A3M8FY44_9BACT (tRNA pseudouridine synthase A n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FY44_9BACT) HSP 1 Score: 112 bits (281), Expect = 1.160e-28 Identity = 56/83 (67.47%), Postives = 61/83 (73.49%), Query Frame = 1 Query: 1 RTVFSCSVNAHPTEQGRVE--IRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRYE 243 RT+F C V G V +R+SGSGFLYNMVRI+AG LMEVGRGKI PD I II S DR AGPTLPPQGLRLEWIRY+ Sbjct: 189 RTIFGCRVERAQAGHGAVRFVVRVSGSGFLYNMVRIIAGTLMEVGRGKIAPDAIGGIIESKDRRNAGPTLPPQGLRLEWIRYD 271
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A5M4D386_9CYAN (tRNA pseudouridine synthase A n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D386_9CYAN) HSP 1 Score: 112 bits (280), Expect = 3.020e-28 Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 1 Query: 1 RTVFSCSVNAH--------PTEQG-RVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRYEEQ 249 RT+ C V P G R+ IR+SGSGFLYNMVRIVAG L+EVGRG+ID D IP IIA+CDR AGPTLPP+GLRLEW+RY ++ Sbjct: 205 RTISGCRVEQSARVDHLDGPAAPGERIVIRVSGSGFLYNMVRIVAGTLLEVGRGRIDADAIPRIIAACDRRAAGPTLPPEGLRLEWVRYGQE 296
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A7V1MEG0_9BACT (tRNA pseudouridine synthase A n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1MEG0_9BACT) HSP 1 Score: 110 bits (276), Expect = 5.930e-28 Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1 Query: 1 RTVFSCSVNA--HPTEQGRVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRY 240 RT++ CSV P R+ IR+SGSGFLYNMVRI+AG LM+VGRGKIDP ++ +I+AS DR +AG TLPPQGLRLEWIRY Sbjct: 189 RTIYRCSVEQAESPNSGQRLVIRVSGSGFLYNMVRIIAGTLMDVGRGKIDPASMGEILASGDRRRAGVTLPPQGLRLEWIRY 270
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A2E2N735_9BACT (tRNA pseudouridine synthase A n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2N735_9BACT) HSP 1 Score: 111 bits (277), Expect = 6.690e-28 Identity = 53/86 (61.63%), Postives = 62/86 (72.09%), Query Frame = 1 Query: 1 RTVFSCSVNAHPTEQG--RVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRYEEQG 252 RTVF+C V P E R + GSGFLYNMVRI+ G L+EVGRGKI+PD +P IIAS DR AGPT+ P+GLRLEWIRY +G Sbjct: 200 RTVFACDVATEPAEPNADRFVFGVEGSGFLYNMVRIIVGTLVEVGRGKIEPDDVPAIIASTDRRNAGPTMAPEGLRLEWIRYPGEG 285
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A2A4RF22_9BACT (tRNA pseudouridine synthase A n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RF22_9BACT) HSP 1 Score: 106 bits (264), Expect = 4.220e-26 Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 1 Query: 1 RTVFSCSVNAHPTEQGRVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRYEE 246 RT++ C + + G+ +RISG+GFLYNMVRI+ G L+EVGRGKI+P+ + ++IAS DR AG TLPP GLRLEW+RYEE Sbjct: 196 RTIYKCEIET--PQPGKFVVRISGNGFLYNMVRIIGGTLVEVGRGKIEPEMVREMIASGDRKLAGVTLPPMGLRLEWVRYEE 275
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A3L7TJ33_9BACT (tRNA pseudouridine synthase A n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7TJ33_9BACT) HSP 1 Score: 105 bits (261), Expect = 1.240e-25 Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 1 Query: 1 RTVFSCSVNAHPTEQGRVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRY 240 RTV C+V P + R+EI I +GFLYNMVRI+AG L+EVGRG+I+P+ IP IIA+CDR +AGPTLPPQGL L WI Y Sbjct: 177 RTVLDCTVRT-PAPR-RIEIEICATGFLYNMVRIIAGTLLEVGRGRIEPEAIPAIIAACDRKRAGPTLPPQGLCLRWIWY 254
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Match: A0A7Y3I7G6_9BACT (tRNA pseudouridine synthase A n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y3I7G6_9BACT) HSP 1 Score: 103 bits (257), Expect = 3.500e-25 Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 1 RTVFSCSVNAHPTEQGRVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDTIPDIIASCDRTQAGPTLPPQGLRLEWIRY 240 RTV +C+V A T R+ I +SG+GFLYNMVRI+AG LM+VGRG PD IP ++A+ DR AGPTLPP+GLRLEWI Y Sbjct: 177 RTVDACTVLA--TGPDRLRIDVSGNGFLYNMVRIIAGTLMQVGRGHWTPDVIPAVLAAADRVAAGPTLPPEGLRLEWIEY 254 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91295.21160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig91295.21160.1 >prot_M-pyrifera_M_contig91295.21160.1 ID=prot_M-pyrifera_M_contig91295.21160.1|Name=mRNA_M-pyrifera_M_contig91295.21160.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp RTVFSCSVNAHPTEQGRVEIRISGSGFLYNMVRIVAGALMEVGRGKIDPDback to top mRNA from alignment at M-pyrifera_M_contig91295:515..781- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig91295.21160.1 ID=mRNA_M-pyrifera_M_contig91295.21160.1|Name=mRNA_M-pyrifera_M_contig91295.21160.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig91295:515..781- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig91295:515..781- >mRNA_M-pyrifera_M_contig91295.21160.1 ID=mRNA_M-pyrifera_M_contig91295.21160.1|Name=mRNA_M-pyrifera_M_contig91295.21160.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig91295:515..781- (Macrocystis pyrifera P11B4 male)back to top |