mRNA_M-pyrifera_M_contig91288.21157.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91288.21157.1
Unique NamemRNA_M-pyrifera_M_contig91288.21157.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91288.21157.1 vs. uniprot
Match: A0A482R6I3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R6I3_9ARCH)

HSP 1 Score: 70.5 bits (171), Expect = 3.760e-13
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 IDWEAIDNRIQQALDADGDGRVTQADLQIHWNRAVAMLGFGLPSGAAFATAFALGLTYG 177
            +DW  +++ + +ALDADGDG+VT  D ++H+++AV +LGF LPSG+AF  AF LGL +G
Sbjct:  193 MDWAKVEDHMVRALDADGDGKVTITDARLHFDKAVKVLGFSLPSGSAFVAAFLLGLRWG 251
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BLAST of mRNA_M-pyrifera_M_contig91288.21157.1 vs. uniprot
Match: A0A2D4BPY0_PYTIN (Amino acid transporter n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPY0_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 1.560e-8
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 IDWEAIDNRIQQALDADGDGRVTQADLQIHWNRAVAMLGFGLPSGAAFATAFALGLT 171
            I+W+ ++  + QA+D DGDG++T+ DLQI + R +AML   LPS A FA  F LG++
Sbjct:  321 INWQKVEKDVVQAVDPDGDGKITKKDLQIWYQRFMAMLQANLPSSAGFAGGFLLGVS 377
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BLAST of mRNA_M-pyrifera_M_contig91288.21157.1 vs. uniprot
Match: F2UA61_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UA61_SALR5)

HSP 1 Score: 48.9 bits (115), Expect = 2.070e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 IDWEAIDNRIQQALDADGDGRVTQADLQIHWNRAVAMLGFGLPSG-AAFATAFALGLTY 174
            + W+ I++ +   LD DGDG+V+QADLQ   ++   M  F LP+  A F   F LGL Y
Sbjct:  116 VHWDKIEHDVTSILDRDGDGKVSQADLQYWQHQLAKMATFQLPASMAGFGVGFGLGLKY 174
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BLAST of mRNA_M-pyrifera_M_contig91288.21157.1 vs. uniprot
Match: A0A8K1C7L2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7L2_PYTOL)

HSP 1 Score: 49.3 bits (116), Expect = 2.210e-5
Identity = 22/57 (38.60%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 IDWEAIDNRIQQALDADGDGRVTQADLQIHWNRAVAMLGFGLPSGAAFATAFALGLT 171
            I+W  ++  + +A+D DGDG++T+ DL+I + R + +L   LPS A FA  F +G++
Sbjct:  164 INWTKVNKDVIEAVDPDGDGKLTKKDLEIGYQRLMKILKTNLPSSAGFAGGFLVGVS 220
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91288.21157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A482R6I3_9ARCH3.760e-1352.54Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2D4BPY0_PYTIN1.560e-847.37Amino acid transporter n=1 Tax=Pythium insidiosum ... [more]
F2UA61_SALR52.070e-542.37Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A8K1C7L2_PYTOL2.210e-538.60Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91288contigM-pyrifera_M_contig91288:40..219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816825.3423028-CDS-M-pyrifera_M_contig91288:39..2191622816825.3423028-CDS-M-pyrifera_M_contig91288:39..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91288 40..219 +
1692278200.612881-CDS-M-pyrifera_M_contig91288:39..2191692278200.612881-CDS-M-pyrifera_M_contig91288:39..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91288 40..219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91288.21157.1prot_M-pyrifera_M_contig91288.21157.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91288 40..219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91288.21157.1

>prot_M-pyrifera_M_contig91288.21157.1 ID=prot_M-pyrifera_M_contig91288.21157.1|Name=mRNA_M-pyrifera_M_contig91288.21157.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
IDWEAIDNRIQQALDADGDGRVTQADLQIHWNRAVAMLGFGLPSGAAFAT
AFALGLTYG*
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mRNA from alignment at M-pyrifera_M_contig91288:40..219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91288.21157.1 ID=mRNA_M-pyrifera_M_contig91288.21157.1|Name=mRNA_M-pyrifera_M_contig91288.21157.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig91288:40..219+ (Macrocystis pyrifera P11B4 male)
ATCGATTGGGAAGCCATCGACAACCGCATCCAACAAGCACTTGACGCTGA
CGGAGACGGGAGAGTCACGCAAGCCGACCTCCAAATCCACTGGAATAGAG
CCGTTGCAATGCTAGGCTTCGGACTCCCCTCTGGCGCCGCCTTTGCAACC
GCCTTCGCTCTCGGACTCACCTACGGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91288:40..219+

>mRNA_M-pyrifera_M_contig91288.21157.1 ID=mRNA_M-pyrifera_M_contig91288.21157.1|Name=mRNA_M-pyrifera_M_contig91288.21157.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig91288:40..219+ (Macrocystis pyrifera P11B4 male)
ATCGATTGGGAAGCCATCGACAACCGCATCCAACAAGCACTTGACGCTGA
CGGAGACGGGAGAGTCACGCAAGCCGACCTCCAAATCCACTGGAATAGAG
CCGTTGCAATGCTAGGCTTCGGACTCCCCTCTGGCGCCGCCTTTGCAACC
GCCTTCGCTCTCGGACTCACCTACGGGTAAATCGATTGGGAAGCCATCGA
CAACCGCATCCAACAAGCACTTGACGCTGACGGAGACGGGAGAGTCACGC
AAGCCGACCTCCAAATCCACTGGAATAGAGCCGTTGCAATGCTAGGCTTC
GGACTCCCCTCTGGCGCCGCCTTTGCAACCGCCTTCGCTCTCGGACTCAC
CTACGGGTAA
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