mRNA_M-pyrifera_M_contig91268.21150.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91268.21150.1
Unique NamemRNA_M-pyrifera_M_contig91268.21150.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A2D9SK63_9GAMM (GST N-terminal domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D9SK63_9GAMM)

HSP 1 Score: 95.1 bits (235), Expect = 1.130e-21
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 SMSYVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            S +Y+LYG + S FTRKLEAAL+FYGA F    +  + R  L++R+GTHQVPVL+TPENW+ AD+TPIM L D RF
Sbjct:    2 SENYILYGGELSYFTRKLEAALIFYGADFEFRAKTNDNRELLEMRSGTHQVPVLQTPENWLIADTTPIMTLLDNRF 77          
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A523LUX0_9GAMM (Glutathione S-transferase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LUX0_9GAMM)

HSP 1 Score: 88.2 bits (217), Expect = 4.060e-19
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   13 YVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            Y++YG + S FTRKLEAA++FYGA F    +  +  A+++ R+GTHQVPVL TPENW+ AD+TP++ + DGRF
Sbjct:    5 YIVYGGELSYFTRKLEAAMIFYGAEFTIKAKTPDLAAEIEQRSGTHQVPVLLTPENWMVADTTPLLMMLDGRF 77          
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A2E6B6N1_9GAMM (GST C-terminal domain-containing protein n=6 Tax=root TaxID=1 RepID=A0A2E6B6N1_9GAMM)

HSP 1 Score: 88.2 bits (217), Expect = 4.110e-19
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   13 YVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            +++YG + S FTRKLEAA++FYGA F    +  + R +++ R+GTHQVPVL TPENW+ AD+TP+M + DGRF
Sbjct:    5 FIVYGGELSYFTRKLEAAMLFYGAEFELRSKTPDMREEIESRSGTHQVPVLHTPENWMIADTTPLMTMLDGRF 77          
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A2E2YR51_9GAMM (GST C-terminal domain-containing protein n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E2YR51_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 5.790e-19
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   13 YVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            YVLYG + S FTRKLEAAL+ YGA F    +  + R +L++R+GTHQVPVL TPENW+  D+TP++ L D RF
Sbjct:    9 YVLYGGELSYFTRKLEAALILYGADFEFRGKTADVREELEMRSGTHQVPVLHTPENWLIGDTTPLLHLLDARF 81          
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A2E7LIY2_9GAMM (GST_C domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7LIY2_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 2.990e-18
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   13 YVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            +++YG + S FT KLEAA++FYGA F    +  + R +++ R+GTHQVPVL TPENW+ AD+TP+M + DGRF
Sbjct:    5 FIVYGGELSYFTXKLEAAMLFYGAEFELRSKTPDMREEIESRSGTHQVPVLHTPENWMIADTTPLMTMLDGRF 77          
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A525JFZ2_9CAUL (Glutathione S-transferase family protein n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A525JFZ2_9CAUL)

HSP 1 Score: 85.9 bits (211), Expect = 3.020e-18
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   13 YVLYGPDPSAFTRKLEAALVFYGAPFA-RVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            YVLYG + S FTRKLEAAL+F+GAPF  R++    +  +++ RAGTHQVPVL TPE W+ AD+TPI+ L D RF
Sbjct:    2 YVLYGSNQSLFTRKLEAALIFHGAPFEFRLKRGRPDVQEIERRAGTHQVPVLLTPEGWMLADTTPIIDLLDQRF 75          
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A2E8VK28_9GAMM (GST N-terminal domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8VK28_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 1.200e-17
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   10 SYVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            +Y+LYG + S FTRKLE+AL FYGAPF    +       ++ R+GTHQVPVL+TPENW+  D+TP+M L D RF
Sbjct:   55 NYILYGGELSYFTRKLESALRFYGAPFEFRNKAENNPQDIEHRSGTHQVPVLQTPENWMNGDTTPLMHLLDERF 128          
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A3D0ZZY4_9GAMM (GST N-terminal domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D0ZZY4_9GAMM)

HSP 1 Score: 82.8 bits (203), Expect = 4.030e-17
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   13 YVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            Y++YG + S FTRKLEAA +FYG PF    +   E   ++ R+GTHQVPVL TPENW+  D+TPIM L D R+
Sbjct:    5 YIIYGGELSYFTRKLEAACIFYGLPFDMRNKNLSEPEIIEARSGTHQVPVLHTPENWMIGDTTPIMRLLDERY 77          
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A7C7WAP0_9GAMM (Glutathione S-transferase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7WAP0_9GAMM)

HSP 1 Score: 82.8 bits (203), Expect = 4.150e-17
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   13 YVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            Y +YG + S FTRKLEAA +FYG  F    +   + A ++ R+GTHQVPVL+TPENW+  D+TPIM + DGR+
Sbjct:    7 YTIYGGELSYFTRKLEAACLFYGLEFEMRNKNQSDPATIEARSGTHQVPVLQTPENWMIGDTTPIMHMLDGRY 79          
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Match: A0A2E7XJZ2_9GAMM (GST N-terminal domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XJZ2_9GAMM)

HSP 1 Score: 82.4 bits (202), Expect = 5.770e-17
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    4 SMSYVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQVPVLRTPENWVPADSTPIMALPDGRF 231
            S  Y++YG + S FTRKLEAAL FY   F    +  E  A+++ R+GTHQVPVL+TPENW+  D+TP+M L D R 
Sbjct:    2 SSKYIIYGGELSYFTRKLEAALYFYDVDFETRSKNKENPAEIESRSGTHQVPVLQTPENWMIGDTTPLMHLMDSRI 77          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91268.21150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9SK63_9GAMM1.130e-2160.53GST N-terminal domain-containing protein n=1 Tax=G... [more]
A0A523LUX0_9GAMM4.060e-1954.79Glutathione S-transferase family protein n=1 Tax=G... [more]
A0A2E6B6N1_9GAMM4.110e-1954.79GST C-terminal domain-containing protein n=6 Tax=r... [more]
A0A2E2YR51_9GAMM5.790e-1957.53GST C-terminal domain-containing protein n=3 Tax=G... [more]
A0A2E7LIY2_9GAMM2.990e-1853.42GST_C domain-containing protein n=1 Tax=Gammaprote... [more]
A0A525JFZ2_9CAUL3.020e-1859.46Glutathione S-transferase family protein n=1 Tax=P... [more]
A0A2E8VK28_9GAMM1.200e-1755.41GST N-terminal domain-containing protein n=2 Tax=G... [more]
A0A3D0ZZY4_9GAMM4.030e-1754.79GST N-terminal domain-containing protein n=2 Tax=G... [more]
A0A7C7WAP0_9GAMM4.150e-1753.42Glutathione S-transferase family protein n=1 Tax=G... [more]
A0A2E7XJZ2_9GAMM5.770e-1752.63GST N-terminal domain-containing protein n=1 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91268contigM-pyrifera_M_contig91268:2..232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog1479238.JQMZ01000001_gene84
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutathione S-transferase, N-terminal domain
EggNOG OGs1Q9ND@1224,2TT22@28211,43YRJ@69657,COG0625@1,COG0625@2
COG Functional cat.O
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816825.016636-CDS-M-pyrifera_M_contig91268:1..2261622816825.016636-CDS-M-pyrifera_M_contig91268:1..226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91268 2..226 -
1692278200.4331937-CDS-M-pyrifera_M_contig91268:1..2261692278200.4331937-CDS-M-pyrifera_M_contig91268:1..226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91268 2..226 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816825.0305786-UTR-M-pyrifera_M_contig91268:226..2321622816825.0305786-UTR-M-pyrifera_M_contig91268:226..232Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91268 227..232 -
1692278200.4548664-UTR-M-pyrifera_M_contig91268:226..2321692278200.4548664-UTR-M-pyrifera_M_contig91268:226..232Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91268 227..232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91268.21150.1prot_M-pyrifera_M_contig91268.21150.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91268 2..226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91268.21150.1

>prot_M-pyrifera_M_contig91268.21150.1 ID=prot_M-pyrifera_M_contig91268.21150.1|Name=mRNA_M-pyrifera_M_contig91268.21150.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MSYVLYGPDPSAFTRKLEAALVFYGAPFARVREIGEERAQLQLRAGTHQV
PVLRTPENWVPADSTPIMALPDGRF
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mRNA from alignment at M-pyrifera_M_contig91268:2..232-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91268.21150.1 ID=mRNA_M-pyrifera_M_contig91268.21150.1|Name=mRNA_M-pyrifera_M_contig91268.21150.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig91268:2..232- (Macrocystis pyrifera P11B4 male)
CAATCCATGTCCTACGTGCTTTACGGCCCGGATCCGAGTGCATTCACGCG CAAACTCGAGGCTGCGCTCGTGTTCTACGGCGCGCCGTTTGCCCGGGTCA GGGAAATCGGCGAGGAACGCGCGCAGTTGCAGTTACGCGCGGGCACGCAC CAGGTGCCTGTGCTCAGGACGCCGGAAAACTGGGTGCCCGCGGACTCGAC CCCGATCATGGCGCTCCCCGACGGGCGTTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91268:2..232-

>mRNA_M-pyrifera_M_contig91268.21150.1 ID=mRNA_M-pyrifera_M_contig91268.21150.1|Name=mRNA_M-pyrifera_M_contig91268.21150.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig91268:2..232- (Macrocystis pyrifera P11B4 male)
ATGTCCTACGTGCTTTACGGCCCGGATCCGAGTGCATTCACGCGCAAACT
CGAGGCTGCGCTCGTGTTCTACGGCGCGCCGTTTGCCCGGGTCAGGGAAA
TCGGCGAGGAACGCGCGCAGTTGCAGTTACGCGCGGGCACGCACCAGGTG
CCTGTGCTCAGGACGCCGGAAAACTGGGTGCCCGCGGACTCGACCCCGAT
CATGGCGCTCCCCGACGGGCGTTTTATGTCCTACGTGCTTTACGGCCCGG
ATCCGAGTGCATTCACGCGCAAACTCGAGGCTGCGCTCGTGTTCTACGGC
GCGCCGTTTGCCCGGGTCAGGGAAATCGGCGAGGAACGCGCGCAGTTGCA
GTTACGCGCGGGCACGCACCAGGTGCCTGTGCTCAGGACGCCGGAAAACT
GGGTGCCCGCGGACTCGACCCCGATCATGGCGCTCCCCGACGGGCGTTTT
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