mRNA_M-pyrifera_M_contig91257.21147.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91257.21147.1
Unique NamemRNA_M-pyrifera_M_contig91257.21147.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91257.21147.1 vs. uniprot
Match: D7FYR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.560e-17
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    4 SGVGGYGNELEYGAWVCFFLCEEALRNGTWSERDVRYCFHLVDETGRGRVGMAEVTRFFEDMVS 195
            +G+G     L Y AWVCF+LCEEAL++GT S RDVRYCF L+DE   GRVG+ EV  F ED VS
Sbjct:  125 TGLGCRRETLGYDAWVCFWLCEEALQSGTCSRRDVRYCFALLDEGNLGRVGVREVEPFVEDAVS 188
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BLAST of mRNA_M-pyrifera_M_contig91257.21147.1 vs. uniprot
Match: A0A6H5JXN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.520e-16
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   31 LEYGAWVCFFLCEEALRNGTWSERDVRYCFHLVDETGRGRVGMAEVTRFFED 186
            L Y AWVCF+LCEEALR+GT S RDVRYCF L+DE   GRVG+ EV  F ED
Sbjct:  124 LGYDAWVCFWLCEEALRSGTCSRRDVRYCFALLDEGNLGRVGVREVEPFIED 175
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91257.21147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYR1_ECTSI2.560e-1760.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXN3_9PHAE2.520e-1669.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91257contigM-pyrifera_M_contig91257:110..304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_004150.1
Exons1
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816824.883383-CDS-M-pyrifera_M_contig91257:109..3041622816824.883383-CDS-M-pyrifera_M_contig91257:109..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91257 110..304 -
1692278200.3664258-CDS-M-pyrifera_M_contig91257:109..3041692278200.3664258-CDS-M-pyrifera_M_contig91257:109..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91257 110..304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91257.21147.1prot_M-pyrifera_M_contig91257.21147.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91257 110..304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91257.21147.1

>prot_M-pyrifera_M_contig91257.21147.1 ID=prot_M-pyrifera_M_contig91257.21147.1|Name=mRNA_M-pyrifera_M_contig91257.21147.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MSGVGGYGNELEYGAWVCFFLCEEALRNGTWSERDVRYCFHLVDETGRGR
VGMAEVTRFFEDMVS
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mRNA from alignment at M-pyrifera_M_contig91257:110..304-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91257.21147.1 ID=mRNA_M-pyrifera_M_contig91257.21147.1|Name=mRNA_M-pyrifera_M_contig91257.21147.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig91257:110..304- (Macrocystis pyrifera P11B4 male)
ATGTCTGGGGTTGGGGGGTATGGCAACGAGTTGGAGTACGGCGCATGGGT
TTGCTTCTTCCTGTGCGAGGAGGCCTTGAGGAACGGCACGTGGTCGGAGC
GAGACGTGCGGTACTGCTTCCATCTGGTAGACGAGACGGGACGCGGGAGG
GTCGGCATGGCCGAGGTCACCCGTTTTTTCGAGGACATGGTGAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91257:110..304-

>mRNA_M-pyrifera_M_contig91257.21147.1 ID=mRNA_M-pyrifera_M_contig91257.21147.1|Name=mRNA_M-pyrifera_M_contig91257.21147.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig91257:110..304- (Macrocystis pyrifera P11B4 male)
ATGTCTGGGGTTGGGGGGTATGGCAACGAGTTGGAGTACGGCGCATGGGT
TTGCTTCTTCCTGTGCGAGGAGGCCTTGAGGAACGGCACGTGGTCGGAGC
GAGACGTGCGGTACTGCTTCCATCTGGTAGACGAGACGGGACGCGGGAGG
GTCGGCATGGCCGAGGTCACCCGTTTTTTCGAGGACATGGTGAGTATGTC
TGGGGTTGGGGGGTATGGCAACGAGTTGGAGTACGGCGCATGGGTTTGCT
TCTTCCTGTGCGAGGAGGCCTTGAGGAACGGCACGTGGTCGGAGCGAGAC
GTGCGGTACTGCTTCCATCTGGTAGACGAGACGGGACGCGGGAGGGTCGG
CATGGCCGAGGTCACCCGTTTTTTCGAGGACATGGTGAGT
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