mRNA_M-pyrifera_M_contig9123.21143.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9123.21143.1
Unique NamemRNA_M-pyrifera_M_contig9123.21143.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: B1N8E9_9PHAE (Glutathione S-transferase 4 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E9_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 5.060e-118
Identity = 176/210 (83.81%), Postives = 186/210 (88.57%), Query Frame = 1
Query:    1 MARVFNYFGIPARGEATRVALAVAGVDFEDKRMSFEEFGASEFKTLPVYQMDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFSTMGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFCVGDTLTIADITIHAVFATVQAGFLAGIPKTMVEDICPSLKAVDNAVMAHPKVKAYYASKA 630
            M  VFNYFGIPARGEATRVALAVAGVD+EDKRMSFEEFGA EFKTLPVYQMDGTDYTQSTALLRYAGKLGG YPE PLA+LKVDEIVMIAEDVFINLFSTMGEKDEAKK+           CQTLMAGK+K+LLEDIARKVE+NK S FCVG +LTIADI +HAV ATVQAGFL GIP TMVEDICPSLKA+D+AVM HPKVKAYYASKA
Sbjct:    1 MPAVFNYFGIPARGEATRVALAVAGVDYEDKRMSFEEFGACEFKTLPVYQMDGTDYTQSTALLRYAGKLGGQYPECPLASLKVDEIVMIAEDVFINLFSTMGEKDEAKKLE---------KCQTLMAGKIKDLLEDIARKVEANKCSTFCVGASLTIADIQVHAVIATVQAGFLTGIPTTMVEDICPSLKALDHAVMEHPKVKAYYASKA 201          
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: D7G537_ECTSI (Glutathione S-transferase n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G537_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 2.660e-66
Identity = 115/207 (55.56%), Postives = 143/207 (69.08%), Query Frame = 1
Query:   16 NYFGIPARGEATRVALAVAGVDFEDKRMSFEEFGASEF--KTLPVYQMDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFSTMGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFCVGDTLTIADITIHAVFATVQAGFLAGIPKTMVEDICPSLKAVDNAVMAHPKVKAYYASKA 630
            NYFG+P RGEATRVALA AG DFED RM F E+GA ++  K LPV +MD  +YTQSTALLRYAGKLGG YP+  LAALKVDEIVMIAEDV  N+F  MG++D+            TVA + L  GK+K L+  +  K+ +N SS F VG++ TIAD+ +HAV    +A FL G+P T + D  P+L  +  A++  PKVKAYYASKA
Sbjct:    8 NYFGLPGRGEATRVALAYAGKDFEDNRMGFPEYGACKWAGKGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCMGQEDD------------TVAKEVL-EGKIKTLVGMLVAKLAANPSSKFFVGNSPTIADLQVHAVIKNFEANFLTGLPTTHIADTAPTLMEMQAALLEDPKVKAYYASKA 201          
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: D7G5G1_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G1_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.230e-51
Identity = 100/200 (50.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:   16 NYFGIPARGEATRVALAVAGVDFEDKRMSFEEFGASEFKT--LPVYQMDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFSTMGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFCVGDTLTIADIT--IHAVFATVQAGFLAGIPKTMVEDICPSLKAVDNAVMAHPK 603
            +YF  P R EATRVALA AG DFED  M F E+GAS++    LPV +MD  +YTQSTALLRYAGKLGG YP+  LAALKVDEIVMIAEDV  N+F  + +KD+            T+A   L+ GK+K L+E +  ++ +N SS F VG   TIAD+   +HAV    +A FL G+P T + D  P+L  +  A++  PK
Sbjct:    8 HYFDDPGRAEATRVALAYAGKDFEDNIMGFPEYGASKWAGIGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCVDQKDD------------TMA-NGLLEGKIKTLVEMLTSRLAANASSKFFVGHPPTIADLQARVHAVIKNFEANFLTGLPTTHIADTAPTLMEMQAALLEDPK 194          
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: A0A6H5JNS9_9PHAE (GST C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS9_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 4.020e-49
Identity = 94/196 (47.96%), Postives = 128/196 (65.31%), Query Frame = 1
Query:   31 PARGEATRVALAVAGVDFEDKRMSFEEFGASEF--KTLPVYQMDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFSTMGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFCVGDTLTIADITIHAVFATVQAGFLAGIPKTMVEDICPSLKAVDNAVMAHPKVKA 612
            P RGEAT VALA  G DF D  M F E GA ++  K LPV +MD  +Y QSTALLRYAGK+GG YP+  LAAL+VDEIVMIAEDV  N+F  MG+ D+            TVA + ++ GK+K L+E +  K+ +N+SS F VG++ TIA++ +HAV    +A FL  +P T++ D  P++  ++ A++  PK KA
Sbjct:   55 PGRGEATGVALAYGGKDFVDNTMGFSEHGACKWAGKGLPVLEMDDAEYFQSTALLRYAGKMGGLYPDDALAALEVDEIVMIAEDVLTNMFKCMGQTDD------------TVA-KGVLEGKIKTLVEMLVAKLATNQSSKFFVGNSPTIANLQVHAVIKNFEANFLTDLPTTLIADTAPTVMEMEVALLQDPKEKA 237          
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: D7G5G0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G0_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 4.360e-46
Identity = 88/157 (56.05%), Postives = 111/157 (70.70%), Query Frame = 1
Query:   16 NYFGIPARGEATRVALAVAGVDFEDKRMSFEEFGASEF--KTLPVYQMDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFSTMGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFCVGDTLTIADI 480
            NYF +P R EATRVALA AG +F+DKR++F E+GA ++  K LPV QMDG +YTQSTALLRYAGKLGG YP+  LAALKVDEIVMI ED+  N+F  MG +D+            TVA + ++ GKVK L+E +  K+ +N SS F VG + TIAD+
Sbjct:    8 NYFELPGRAEATRVALAYAGKEFDDKRLTFPEYGACKWAGKGLPVLQMDGAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIGEDILANMFKCMGAEDD------------TVA-KGVLEGKVKGLVELLVSKLAANPSSKFFVGTSPTIADL 151          
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: D7G536_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G536_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 4.850e-40
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 1
Query:   16 NYFGIPARGEATRVALAVAGVDFEDKRMSFEEFGASEF--KTLPVYQMDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFSTMGEKDE 318
            NYFG+P RGEATRVAL  AG DFED RM F E+GA ++  K LPV +M+G +YTQSTALLRYAGKLGG YPE  LAALKVDEIVMI ED+  N+F  MGEK +
Sbjct:    8 NYFGLPGRGEATRVALVYAGKDFEDNRMGFPEYGACKWAGKGLPVLEMNGFEYTQSTALLRYAGKLGGLYPEDALAALKVDEIVMIGEDIMANMFKCMGEKGD 110          
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: T0QNS1_SAPDV (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0QNS1_SAPDV)

HSP 1 Score: 127 bits (318), Expect = 6.530e-33
Identity = 71/209 (33.97%), Postives = 118/209 (56.46%), Query Frame = 1
Query:   16 NYFGIPARGEATRVALAVAGVDFEDKRMSFEEFGASE----FKTLPVYQMDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFSTMGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFCVGDTLTIADITIHAVFATVQAGFLAGIPKTMVEDICPSLKAVDNAVMAHPKVKAYYASKA 630
             YF +P R E  R+ L++  + FED+R++ + F A +    F+ +P   +DG ++ Q  +L RY GKL G YP  P+ AL+VDE++   EDV   L   + E+D  +K         T     L + K+  L E + R++   K + F +G+T+T+AD+T++ +FAT ++G  + +    V+D  P  +A+   +  HPKV+AYYA +A
Sbjct:   13 TYFDMPGRAELIRLVLSLHDIPFEDERLTRDAFAARKASFPFEQVPTLTIDGVEFAQGHSLARYVGKLTGMYPSDPIDALRVDEMLSFQEDVVQALIPMLREQDIERK---------TALATELASSKLPHLFELLERRLAVTKGT-FVLGETMTMADVTLYVLFATFKSGRFSPMDTAFVDDY-PHWRAIYTVLHGHPKVQAYYAQQA 210          
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: A0A1S8VHC2_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VHC2_9FUNG)

HSP 1 Score: 126 bits (316), Expect = 1.170e-32
Identity = 79/211 (37.44%), Postives = 121/211 (57.35%), Query Frame = 1
Query:   16 NYFGIPARGEATRVALAVAGVDFEDKRMSFEEFGASE----FKTLPVYQMDG-TDYTQSTALLRYAGKLGGTYPES-PLAALKVDEIVMIAEDVFINLFSTMGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFCVGDTLTIADITIHAVFATVQAGFLAGIPKTMVEDICPSLKAVDNAVMAHPKVKAYYASKA 630
             YFGI AR EA+R+AL V GV FED+R+S E +GA +    F  LP+  ++G T   QS A+LRYAG LGG YP + P+ A  VD+IVM  ED+   ++ST+ EKD   K++           + +   K   + + + + +E + S  + VGD++++AD+ I+ +   ++ G   G+P   V D    + AV  AV+ HPKV  + A+ A
Sbjct:   11 TYFGIRARAEASRLALYVGGVPFEDERVSGEGWGAMKQATPFGQLPLLTINGSTQIAQSNAILRYAGSLGGLYPAADPIKAALVDQIVMHIEDMSNTVYSTVREKDPEVKMQ---------QRKVIAQDKYPAMFKSLEQVIEKHSSGKWAVGDSISVADLAIYVLIVLIKTGIWDGVPVD-VADSFVRVSAVYTAVLTHPKVAEWEAAHA 211          
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: A0A6H5JE39_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE39_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 7.750e-31
Identity = 71/152 (46.71%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  151 MDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFSTMGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFCVGDTLTIADITIHAVFATVQAGFLAGIPKTMVEDICPSLKAVDNAVMAHPKV 606
            M+  +Y QST LLRYAGKLGG YP+  LAALKVDEIVMIAEDV  N+    G+KD+            TVA + ++ GK+K L++ +  K+ +N SS F VG++  IAD+ +HAV    QA FL G+P T + D  P+L  ++ A++  PKV
Sbjct:  304 MNDAEYFQSTTLLRYAGKLGGLYPDDALAALKVDEIVMIAEDVLTNMSKCTGQKDD------------TVA-KGVLVGKIKTLVDMLVAKLAANPSSMFFVGNSPNIADLQVHAVIKNSQANFLTGLPTTHIVDTAPTLMEMEAALVEDPKV 442          
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Match: A0A0L0DBM7_THETB (Ralgps2 protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBM7_THETB)

HSP 1 Score: 127 bits (319), Expect = 2.920e-30
Identity = 78/194 (40.21%), Postives = 109/194 (56.19%), Query Frame = 1
Query:   16 NYFGIPARGEATRVALAVAGVDFEDKRMSFEEFGASE----FKTLPVYQMDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFSTMGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFCVGDTLTIADITIHAVFATVQAGFLAGIPKTMVE-DICPSLKAVDN 582
             YF  P R  A R  L   GV+FED  ++F +F A +    +  +PV ++DGTDY QS A+LRYAGKL G YPE P+AAL VDE++  AEDV   L  +M EKDE KK+              LMAG + +LL  + ++V  N  S F VG   T+AD  +  +     +G + G+PK ++  +  P+L A+ N
Sbjct:    9 TYFPFPGRAGAIRDVLNDNGVEFEDFHVAFADFPALKPSLPYGAMPVLEIDGTDYAQSNAILRYAGKLTGAYPEDPVAALMVDELLDAAEDVIGLLTPSMKEKDEEKKLAMRA---------ALMAGPLPDLLALVEKRVARNTESDFAVGAAKTVADYKLKYLVGFATSGNIDGVPKDVINAESHPALTALLN 193          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9123.21143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B1N8E9_9PHAE5.060e-11883.81Glutathione S-transferase 4 n=1 Tax=Laminaria digi... [more]
D7G537_ECTSI2.660e-6655.56Glutathione S-transferase n=4 Tax=Ectocarpus silic... [more]
D7G5G1_ECTSI2.230e-5150.00Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JNS9_9PHAE4.020e-4947.96GST C-terminal domain-containing protein n=1 Tax=E... [more]
D7G5G0_ECTSI4.360e-4656.05Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D7G536_ECTSI4.850e-4068.93Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
T0QNS1_SAPDV6.530e-3333.97Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A1S8VHC2_9FUNG1.170e-3237.44Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
A0A6H5JE39_9PHAE7.750e-3146.71DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A0L0DBM7_THETB2.920e-3040.21Ralgps2 protein n=1 Tax=Thecamonas trahens ATCC 50... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9123contigM-pyrifera_M_contig9123:342..4276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue2.6e-27
Seed eggNOG ortholog112098.XP_008610482.1
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
EggNOG free text desc.glutathione transferase activity
EggNOG OGsKOG1695@1,KOG1695@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons5
Model size633
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9123.21143.1prot_M-pyrifera_M_contig9123.21143.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9123 342..4276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816824.6135228-CDS-M-pyrifera_M_contig9123:341..3711622816824.6135228-CDS-M-pyrifera_M_contig9123:341..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 342..371 -
1692278200.175343-CDS-M-pyrifera_M_contig9123:341..3711692278200.175343-CDS-M-pyrifera_M_contig9123:341..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 342..371 -
1622816824.624149-CDS-M-pyrifera_M_contig9123:691..8111622816824.624149-CDS-M-pyrifera_M_contig9123:691..811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 692..811 -
1692278200.1935687-CDS-M-pyrifera_M_contig9123:691..8111692278200.1935687-CDS-M-pyrifera_M_contig9123:691..811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 692..811 -
1622816824.6368544-CDS-M-pyrifera_M_contig9123:1195..13151622816824.6368544-CDS-M-pyrifera_M_contig9123:1195..1315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 1196..1315 -
1692278200.2072747-CDS-M-pyrifera_M_contig9123:1195..13151692278200.2072747-CDS-M-pyrifera_M_contig9123:1195..1315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 1196..1315 -
1622816824.648765-CDS-M-pyrifera_M_contig9123:1877..20901622816824.648765-CDS-M-pyrifera_M_contig9123:1877..2090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 1878..2090 -
1692278200.2210698-CDS-M-pyrifera_M_contig9123:1877..20901692278200.2210698-CDS-M-pyrifera_M_contig9123:1877..2090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 1878..2090 -
1622816824.661072-CDS-M-pyrifera_M_contig9123:4126..42761622816824.661072-CDS-M-pyrifera_M_contig9123:4126..4276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 4127..4276 -
1692278200.2363007-CDS-M-pyrifera_M_contig9123:4126..42761692278200.2363007-CDS-M-pyrifera_M_contig9123:4126..4276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9123 4127..4276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9123.21143.1

>prot_M-pyrifera_M_contig9123.21143.1 ID=prot_M-pyrifera_M_contig9123.21143.1|Name=mRNA_M-pyrifera_M_contig9123.21143.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=211bp
MARVFNYFGIPARGEATRVALAVAGVDFEDKRMSFEEFGASEFKTLPVYQ
MDGTDYTQSTALLRYAGKLGGTYPESPLAALKVDEIVMIAEDVFINLFST
MGEKDEAKKVRFFGQVAGTVACQTLMAGKVKELLEDIARKVESNKSSAFC
VGDTLTIADITIHAVFATVQAGFLAGIPKTMVEDICPSLKAVDNAVMAHP
KVKAYYASKA*
back to top

mRNA from alignment at M-pyrifera_M_contig9123:342..4276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9123.21143.1 ID=mRNA_M-pyrifera_M_contig9123.21143.1|Name=mRNA_M-pyrifera_M_contig9123.21143.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3935bp|location=Sequence derived from alignment at M-pyrifera_M_contig9123:342..4276- (Macrocystis pyrifera P11B4 male)
ATGGCTCGCGTATTCAACTACTTCGGAATCCCCGCCCGTGGCGAGGCAAC CCGCGTCGCTCTGGCCGTCGCCGGCGTTGACTTCGAGGACAAGCGCATGT CCTTCGAAGAGTTCGGTGCCTCCGAGTTCAAGACTCTGCCCGTCTACCAG GTGAGAGGACCGAGAGATCAATCAGCCAATTAAGCTTCAGGTTTCCCGCT GTACTACAGTACTACAGCAGTACATGCATACGTCTTGCACCCCCATATTA GTAGTGTAAGTCGAAGGGGGGGGACACTTTGAGCTTCACTGGCTCAGACA GGTACTGCTGTTGTGGGCTACCATGATGGTGCTTCACTTCATAGTATGTC TGTACAGGTATGTACCAGTCGAAACTACGCCACAGCAGAGATCGTACACA TATTGCTACGTATACAGCACAAGCACTGCCCTGTCGCCCCACGTACTGGA TATCACAGGCACGACATACATGCGTGTTATTATACACATGTACATGAAAA GAAAAACCGAAAAGAGACCCAACGAAAAACAAGGAAAAAAAAAAGTCACA GGCACGACATGCATATTATATGAGAGATAAAACGGAAGGAGACAACGAAA AACAAGAGAGAAGAAAAAAAAGGAAACAAATCGAAAAAAAAAAAAAGTGT GCGTACGTACATACAGAGTTATACTGCTGTTAGTACCAGAGGTATTTTTT TTTTCGCCAGCAATACAATTATACGTCGTGATCGGTCTCTATGCGTTGCT TCCGTGTGTTGAGAGCTGCAGGTACTCGGACAAAAGGCCACATACATCCT AGATTTTTCGTGGCTTCCGGTGTACGATTGGCAAGTGGTGTGGTGAACGC GCACCAGCAAATTATCTCTCTACAGCATGCTATTAATACTAATATTACGT AGAGGATAGGACATACGGTACACCTGTACATTCACTTAATGTTTATACAT GTATGTCTTAGAACAATGCCTGTATCACCGTCGTTATTATCAGTAGTACT TTCTGTTCGCCATGGCGGTCAATAGTATGGGGAGCAACAGCAGTGTTCCG CATGTTTCTGTTCACGCGCCGCACCGCATTCCATATTTCGTTCTGAGATT ATCACAGCAGTATGATCCCCCGTACTGTTTTGGTATGGATACGAAGTTAA ATTTTTTTTTTGTATTATTAATTATTGTTTTTGAAGGTCACCACTCATTC GAGATGCACACACTGATGAGGAATAGAAGCTCGGAGCAGATGGTTCCATG TTTGTTGATTGGGGTCATATCGGGGTGGTGAGCTGTGTAACCTCGATTTC AAGGTTAACATTGCCAGACTATAATAAGAAACAACGATAATACATAATTC TACGTACGACGTAACGTCGACATTTCAGTAAAAATGAGAGCGCGCAAGAC AGCGACAACTACAGCAGTAGCTCAGCATGATGCTGCGCGTACCACACCAT GGGTTCCGTTGGGTGTCTGGGACTAATACGTCTGATATACTGCACCCTCT AAAATGATTCCTGTTGTATGATGCTGCAGTAAGTGCATGGTAACCACAAC CCCCCCCGCCTCCACTGCCGATCGTGGTCCTTCGGTGTTTCGATTGCCAC CCACTACTGTGATTTGTTGCTTTACACATATATAAAAAGGGTGACTACAA TCCAGTGTAGATACGTATCATCATATCATTGCACCGATAATATCCTAGAT ACGAGTTGCAGTCACCTTCCCCCTCTCCCTCCCACTGGACAATGCAGTGC ACCCCCATCCACCTACATACCAGACGACGTACGGAATATTTCATGGTCCG CCCATTTACCGTCTCTCGGGCTCAAAAACATGAACGAACGACCCCGACAA AACAGGAACCCCATTGCTGTCACACGGACTATTTATTTATTCCCTGTGCC GTCAGCATTGAACGCCCTACTGCAGCAGTTCGTAGACAACCATGGCTACA TCCATTCCCCAGTTTGACAAATCTGTTTCAATGTCCATCTCCAGTTTTGA CAATCGTGATTCAATGTCCGTTGACCGGTATCCCGAAGCCGGCAACCTCC CCCCCCCCCCCGTAACCCCAACCCACCCAATCACCCATCAACCTCTACTC CATCCGATATCTACGTCCCATCTCCCCATGCGTCTGGACACCCGCGCTCC AACGCAAATTTCATCAACTCGGACTTGGGACACTAGATGGACGGAACCGA CTACACCCAGTCGACCGCCCTTTTGCGATACGCCGGTAAGCTCGGCGGCA CGTACCCGGAAAGCCCTCTCGCCGCCCTCAAGGTGGACGAGATCGTGATG ATCGCGGAGGACGTGTTCATCAACCTCTTCTCCACCATGGGAGAGAAGGA CGAGGCCAAGAAGGTACGTTTTTTTGGCCAGGTGGCGGGTACAGTAGCCG TAAACTGTGCCGGTGGAGGCAACGTAAAAATTACCGATGATATCGGTAAC TATGTCATCGGTAACTATATAGCCAAAACGGAGATGGCAGGGGTCACCGT AGTACTAGCGATAGCGGTATCGGCAATGACAACGGTCTGGCGGTAACCCG TACGGAATAAAATATGGCAATTGCGGCAAAACGGTAACGGGCACGGCAAC CCTATCGTGATGGTAAGGACAACTATACCGGAAATGGACCATATCGGTAG TATCGACGGTGCCAGCATTGGTGACGTTAATGACGGCGATGGCGGTAACG GTAACGGGGACTGTTACTGGTAACTACTAAAGGTAATGACAGCGGTAACT GCATCGTTTCCGATACACTGTCCCACCCCGCCCCCCTGCACCCCCCCCTA ACATATCATCATACACGACACCACCGATGGAAAAACATACGTTGCACACC TGTGCTTTTGCCGACACCACGCCCCATCCTCCTCCACTCTGCTCTCCCGC GTTGAATGCCTCCTTATCTCGAACTCCAATGGAACGACATACGAACCCTC AGTTGCACAAGTGCCAGACTCTGATGGCCGGCAAAGTGAAGGAGCTGCTG GAGGACATCGCCAGGAAGGTGGAATCCAACAAGAGCTCGGCCTTCTGCGT CGGGGACACCCTAACCATCGCCGACATCACGGTGGGTGACTTCGTGGTCC CTTTTTATGTGTGTGCCTGGGCCCCTCAACTCAAGAAAGTAGTAGGATAT TACAATATTGGTTTCGGAAAGTAACTGACTTCAGCAAAAACCAAATTGCG TCCAGCACAGCAGTAAAACGTACGTACGTGCGTACAGTACTGAGAAGGGT CAAGGGTGAGGCGTATGCAAGAGTTGTTTCCCTTCTGATGACACAACCTG CGAAACCGTGGGAGGTGGTATTACGGGGGACCCAAGCAAATAGGACCAAA TATTGTTCGCGAAAAGAGGTTAATATTTGGGTTTTCTGGCCGTCTTACCC CAGTCGTCCCTCTGCGTCTTTTCTCTTGTGCTGTGTCGTGTCTGCCGTAT CTCTTTTGTGTACAGATTCACGCCGTGTTCGCCACCGTGCAGGCTGGTTT CCTGGCTGGCATCCCCAAGACCATGGTGGAGGACATCTGCCCATCCCTCA AGGCCGTCGACAACGCCGTCATGGCCCACCCGAAGGTATTTTTTGCAGCA GCCCGAATGCAGCCTGCCGTTCGTTCGATTCGTTGAACGCAAGCTGTTTG CGTTGTTTTGCGTCCGTGGATATGGCTTCCTAGTACATGGCACCGACTAC CGTGGAGCTGCGTTCAAAAAATCTTCGATTAAAGAGGCGTGTGGCAGTGA CTGAAATCCTGAAAGAGCTGACCGCGCACACCAGAAGGGACTGCGTACTG CGTTTGTTTGCGCTGAATACCCCTCTCGCCCTCCCACCCCTCACACTTGT CTAACCCACTCGGCTATCCCACCCTCTACTACTACCTCGTCGTCTAATAT TACAGGTGAAGGCGTACTACGCATCCAAGGCCTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9123:342..4276-

>mRNA_M-pyrifera_M_contig9123.21143.1 ID=mRNA_M-pyrifera_M_contig9123.21143.1|Name=mRNA_M-pyrifera_M_contig9123.21143.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1266bp|location=Sequence derived from alignment at M-pyrifera_M_contig9123:342..4276- (Macrocystis pyrifera P11B4 male)
ATGGCTCGCGTATTCAACTACTTCGGAATCCCCGCCCGTGGCGAGGCAAC
CCGCGTCGCTCTGGCCGTCGCCGGCGTTGACTTCGAGGACAAGCGCATGT
CCTTCGAAGAGTTCGGTGCCTCCGAGTTCAAGACTCTGCCCGTCTACCAG
ATGGCTCGCGTATTCAACTACTTCGGAATCCCCGCCCGTGGCGAGGCAAC
CCGCGTCGCTCTGGCCGTCGCCGGCGTTGACTTCGAGGACAAGCGCATGT
CCTTCGAAGAGTTCGGTGCCTCCGAGTTCAAGACTCTGCCCGTCTACCAG
ATGGACGGAACCGACTACACCCAGTCGACCGCCCTTTTGCGATACGCCGG
TAAGCTCGGCGGCACGTACCCGGAAAGCCCTCTCGCCGCCCTCAAGGTGG
ACGAGATCGTGATGATCGCGGAGGACGTGTTCATCAACCTCTTCTCCACC
ATGGGAGAGAAGGACGAGGCCAAGAAGGTACGTTTTTTTGGCCAGGTGGC
GGGTACAGTAGCCATGGACGGAACCGACTACACCCAGTCGACCGCCCTTT
TGCGATACGCCGGTAAGCTCGGCGGCACGTACCCGGAAAGCCCTCTCGCC
GCCCTCAAGGTGGACGAGATCGTGATGATCGCGGAGGACGTGTTCATCAA
CCTCTTCTCCACCATGGGAGAGAAGGACGAGGCCAAGAAGGTACGTTTTT
TTGGCCAGGTGGCGGGTACAGTAGCCTGCCAGACTCTGATGGCCGGCAAA
GTGAAGGAGCTGCTGGAGGACATCGCCAGGAAGGTGGAATCCAACAAGAG
CTCGGCCTTCTGCGTCGGGGACACCCTAACCATCGCCGACATCACGTGCC
AGACTCTGATGGCCGGCAAAGTGAAGGAGCTGCTGGAGGACATCGCCAGG
AAGGTGGAATCCAACAAGAGCTCGGCCTTCTGCGTCGGGGACACCCTAAC
CATCGCCGACATCACGATTCACGCCGTGTTCGCCACCGTGCAGGCTGGTT
TCCTGGCTGGCATCCCCAAGACCATGGTGGAGGACATCTGCCCATCCCTC
AAGGCCGTCGACAACGCCGTCATGGCCCACCCGAAGATTCACGCCGTGTT
CGCCACCGTGCAGGCTGGTTTCCTGGCTGGCATCCCCAAGACCATGGTGG
AGGACATCTGCCCATCCCTCAAGGCCGTCGACAACGCCGTCATGGCCCAC
CCGAAGGTGAAGGCGTACTACGCATCCAAGGCCTAGGTGAAGGCGTACTA
CGCATCCAAGGCCTAG
back to top